mRNA_P-littoralis_Contig154.99.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig154.99.1
Unique NamemRNA_P-littoralis_Contig154.99.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig154.99.1 vs. uniprot
Match: Q6XLY0_9PHYC (FirrV-1-B56 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XLY0_9PHYC)

HSP 1 Score: 333 bits (855), Expect = 2.560e-108
Identity = 180/384 (46.88%), Postives = 250/384 (65.10%), Query Frame = 1
Query:   25 MQFDLISGYSARASWAGGLRVAIIEYYADNFRT---VSECEGNDHFVVVVNLTPGTRY--TLQLTLQDGTRCRDGFETCPADAPCLANLYQSTRRKDGVHDTTRFNKATHDAFVEHFAEFVEAGDKILAPVSLRGAKKNILTTAVTDGTTL--DRVDDSSLFLPF--SQSHDNVQTVTLRRGSKES--TMVYDASCNSVRYRGASYAVGESMNMFGKMVTVGDGSIVLVFSDVVAQVFPFTVAQALSVVGTSRSQFMRNQVCNTANMIASKTTGAQGDTSAHIWVHDTDLGTTDEITMVVHSVDEDSTFATMSLGVLHTDASQNKFIEPALRLSSTSTTISAQDDTDATRSALFETTGLPFDSDESAVYFGAPKQFRIKFSDGS 1143
            M FDL+S YS R  W      +++  Y DN       ++C  ++  +V+VNL   T Y  +L+ T  +  R    F TCP D PCLANLY S RR DGV+DTT F K  HD F++HF+  V  GD+I A V + G  +N++  A T+G  L  D   D+++FLPF    + + VQTVTL+  + ES  T+VYDA  + + Y G +Y+VG+   MF K VTV DGSIVL+FSD VA+ +PF  ++AL+VVG++ S FM+N  CN  N++  KTTG  G T +  WV + D   T E++ +VH +D+ ST  T+SLGVL+TD+S  +FIEPAL L +TSTTISAQ+D + T SA FE+ GL FD+D++A+YFG+ ++FRIKFSDG+
Sbjct:    1 MDFDLVSAYSVRVFWKSDYHPSVVYCYPDNHPDQVIAAQCVEHEAAIVIVNLHADTTYHVSLESTAPESQRLTGHFVTCPKDQPCLANLYASIRRPDGVYDTTSFEKELHDVFLQHFSTIVSPGDRIFAKVEVNGVSQNVMAIAATEGVELEIDAAPDTNVFLPFFPGDNSEAVQTVTLKNKNHESLETLVYDAHTDKLAYGGDAYSVGDKFQMFNKTVTVADGSIVLLFSDTVAKTWPFDASKALAVVGSAGSHFMKNITCNVQNLVGQKTTGESGSTYSSAWVTNADDSNTLEVSRMVHELDDTSTTGTLSLGVLYTDSSNQQFIEPALALQATSTTISAQNDAEQTTSATFESKGLSFDTDDAAIYFGSSQRFRIKFSDGT 384          
BLAST of mRNA_P-littoralis_Contig154.99.1 vs. uniprot
Match: B5LWF4_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWF4_9PHYC)

HSP 1 Score: 313 bits (803), Expect = 2.870e-100
Identity = 176/390 (45.13%), Postives = 253/390 (64.87%), Query Frame = 1
Query:    1 VVFISYHNMQFDLISGYSARASWAGGLRVAIIEYYADNFRT--VSECEGNDHFVVVVNLTPGTRYTLQLTLQDGTRCRD---GFETCPADAPCLANLYQSTRRKDGVHDTTRFNKATHDAFVEHFAEFVEAGDKILAPVSLRGAKKNILTTAVT-DGTTLDRVDDSSLFLPFSQSHDN--VQTVTLRRG-SKESTMVYDASCNSVRYRGASYAVGESMNMFGKMVTVGDGSIVLVFSDVVAQVFPFTVAQALSVVGTSRSQFMRNQVCNTANMIASKTTGAQGDTSAHIWVHDTDLGTTDEITMVVHSVDEDSTFATMSLGVLHTDASQNKFIEPALRLSSTSTTISAQDDTDATRSALFETTGLPFDSDESAVYFGAPKQFRIKFSDGS 1143
            ++ +  + M FDL+S +SAR  W      A +   A        ++C  ++  VVVVNL PGT Y + +   + T+  D    F T  ++ P L+ LY S R  +G+ DTTRF+   HD FVE+F+  V  GD+ILA V + GA + ++T A + +G++ D   +S++FLPF +      VQTVTLR   S ++T+VYD+S +++ Y G  Y VG+   +F + VTV DGSIVL+FSD VA+ +PF  ++ALSVVG++ S FM+N  CNT N++  K  G  G T    W+H+TD  +T E++ +VH VDEDS  AT+SLGVLHTD+S  KFIEPAL L +T+TTISAQ+D + T SA F++TGL FD+D++A+YFG+ + FRIKFS G+
Sbjct:   12 ILLVCDYKMDFDLVSAFSARIFWKADFTAASVHCVASGSAKPIAAQCSNDEAAVVVVNLEPGTTYAVSVRSAE-TKSPDLYGSFTTKSSENPELSALYSSIRTPEGIFDTTRFDTKLHDIFVENFSSIVSPGDRILAKVVVNGAPQEVMTVAASGEGSSFDVDAESNIFLPFHRKTGEALVQTVTLRHPTSADATLVYDSSTDNLAYGGDHYGVGDKFELFNRTVTVADGSIVLLFSDTVAKTWPFDASKALSVVGSAGSHFMKNITCNTHNLVGQKIDGETGSTYNSAWIHNTDDSSTLEVSRMVHEVDEDSANATLSLGVLHTDSSNQKFIEPALSLQATATTISAQNDDEQTTSATFQSTGLSFDTDDAAIYFGSSQNFRIKFSSGT 400          
BLAST of mRNA_P-littoralis_Contig154.99.1 vs. uniprot
Match: Q8QNL6_ESV1K (EsV-1-50 n=3 Tax=root TaxID=1 RepID=Q8QNL6_ESV1K)

HSP 1 Score: 294 bits (753), Expect = 8.330e-93
Identity = 172/395 (43.54%), Postives = 235/395 (59.49%), Query Frame = 1
Query:   22 NMQFDLISGYSARASWAGGLRVAIIEYYADNFRTVSECEGNDHFVVVVNLTPGTRYTLQLT-LQDGTRCRDGFETCPADAPCLANLYQSTRRKDGVHDTTRFNKATHDAFVEHFAEFVEAGDKILAPVSLRGAKKNILTTAVTDGTTLDRVDDSSLFLPFSQSHDNVQTVTLRRG----SKESTMVYDASCNS-------VRYRGAS---------YAVGESMNMFGKMVTVGDGSIVLVFSDVVAQVFPFTVAQALSVVGTSRSQFMRNQVCNTANMIASKTTGAQGDTSAHIWVHDTDLGTTDEITMVVHSVDEDSTFATMSLGVLHTDASQNKFIEPALRLSSTSTTISAQDDTDATRSALFETTGLPFDSDESAVYFGAPKQFRIKFSDGS 1143
            ++QF+L S +S + SW                    E   +   + +VNL P T Y +++T     T   D F+T   + P L NLY S R +DG +D T+F+K+ HD F+++F + V+ GD I A V L+GA KNI T AVT+G+T D V D +LFLPFS+   + Q VTL         E+T V D +          + Y   S         Y VG+  N+FGKMVTV DGSIVLVF D VA+V+PF  + A +V+GT  SQF +N  CN  N++ SKTTGA GDT +  WV+DT+  T  E T +VH++DEDS   T+S+GV HTDA+ N FIEP +  +S STTISAQDD+D T S   + TG+ FD+D++ +YFGA ++FRI F DG+
Sbjct:    2 SLQFELKSAFSVKISWDSFDESDAYAVQWTQSSVQKETTVSTSAIALVNLEPDTSYDVRVTSASSNTVLSDEFQTWSLEDPHLENLYASVRLEDGTYDATQFDKSVHDVFLKYFNDIVQNGDTIYASVILKGAPKNIETRAVTEGSTTDVVGDQNLFLPFSRDSGSAQVVTLSNSIPIDDVEATAVSDVAVAQDLGGDVELLYTPESDTFTIGNNVYGVGDKFNLFGKMVTVADGSIVLVFEDTVAKVYPFNTSTASNVIGTLGSQFAKNYTCNVINVVGSKTTGASGDTYSSSWVYDTETDTIAEATRIVHTIDEDSANGTISIGVRHTDANSNTFIEPVVTCASGSTTISAQDDSDNTVSTTIDPTGISFDTDDACIYFGAAQKFRIIFRDGT 396          
BLAST of mRNA_P-littoralis_Contig154.99.1 vs. uniprot
Match: A0A835Z0Q4_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0Q4_9STRA)

HSP 1 Score: 125 bits (313), Expect = 1.970e-28
Identity = 101/377 (26.79%), Postives = 172/377 (45.62%), Query Frame = 1
Query:   31 FDLISGYSARASWAGGLRVAIIEY---YADNFRTVSECEGNDHFVVVVNLTPGTRYTLQL-TLQDGTRCRDG-FETCPADAPCLANLYQSTRRKDGVHDTTRFNKATHDAFVEHFAEFVEAGDKILAPVSLRGAKKNILTTAVTDGTTLDRVDDSSLFLPFSQSHDNVQTVTLRRGSKESTMV-YDASCNSVRYRGASYAVGESMNMFGKMVTVGDGSIVLVFSDVVAQVFPFTVAQALSVVGTSRSQFMRNQVCNTANMIASKTTGAQGDTSAHIWVHDTDLGTTDEITMVVHSVDEDSTFATMSLGVLHTDASQNKFIEPALRLSSTSTTISAQDDTDATRSALFETTGLPFDSDESAVYFGAPKQFRIKFSDGS 1143
            F  +S +SA  +WA      +I+Y       F T +E  G       +NL P   Y  ++ T + G     G F T       +A +Y+S R   G  D T  ++  HDA ++      + GD +   +++ G+ ++   T    G  +       L +PF++  D   +VT++  S +  +  Y    ++V   G  + VG+    FG+   +  GSIV+ F++ V   +P +   A S   T  + +      ++A     +T G  G T    +V+    GTT EI   + SV  +    T SLG+ H D +   FI+P ++ +   T  ++ D T    S+ F   GL FD+ ++A+Y GA K+FR+KF+ G+
Sbjct:    5 FSSVSAFSAVLNWAPSAEACLIQYGLGTGGRFTTAAEVAGGACKFTALNLRPSQTYRARVVTARHGVVVAQGEFVTRSRSDSDIAAMYESLRGDGGELDATDLDEEAHDALIDALGAVAKEGDVVHTAITVHGSVRHARATVALPGGEVVARPGDHLLMPFARRGDPC-SVTIKSASGDGMLFEYCPDDDTVIVAGVRHQVGDRFVCFGQSAMIARGSIVVAFTNSVTATYPHSATLA-SKATTQGTTYFNAVSMSSATFTGQQTLGQTGKTVQSHYVYHPSNGTTQEIARHISSVASNQQDGTYSLGLSHADGAST-FIDPVIQCARDETRFTSSDATTTVNSS-FTKAGLSFDNADAALYLGANKEFRLKFTAGT 377          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig154.99.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Q6XLY0_9PHYC2.560e-10846.88FirrV-1-B56 n=1 Tax=Feldmannia irregularis virus a... [more]
B5LWF4_9PHYC2.870e-10045.13Uncharacterized protein n=1 Tax=Feldmannia species... [more]
Q8QNL6_ESV1K8.330e-9343.54EsV-1-50 n=3 Tax=root TaxID=1 RepID=Q8QNL6_ESV1K[more]
A0A835Z0Q4_9STRA1.970e-2826.79Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig154contigP-littoralis_Contig154:363460..364678 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1219
Hectar predicted targeting categoryother localisation
Exons1
Cds size1188
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789738.6828046-UTR-P-littoralis_Contig154:363459..3634831680789738.6828046-UTR-P-littoralis_Contig154:363459..363483Pylaiella littoralis U1_48UTRP-littoralis_Contig154 363460..363483 +
1680789738.708299-UTR-P-littoralis_Contig154:364671..3646781680789738.708299-UTR-P-littoralis_Contig154:364671..364678Pylaiella littoralis U1_48UTRP-littoralis_Contig154 364672..364678 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789738.6914008-CDS-P-littoralis_Contig154:363483..3646711680789738.6914008-CDS-P-littoralis_Contig154:363483..364671Pylaiella littoralis U1_48CDSP-littoralis_Contig154 363484..364671 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig154.99.1prot_P-littoralis_Contig154.99.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig154 363484..364671 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig154.99.1

>prot_P-littoralis_Contig154.99.1 ID=prot_P-littoralis_Contig154.99.1|Name=mRNA_P-littoralis_Contig154.99.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=396bp
MQFDLISGYSARASWAGGLRVAIIEYYADNFRTVSECEGNDHFVVVVNLT
PGTRYTLQLTLQDGTRCRDGFETCPADAPCLANLYQSTRRKDGVHDTTRF
NKATHDAFVEHFAEFVEAGDKILAPVSLRGAKKNILTTAVTDGTTLDRVD
DSSLFLPFSQSHDNVQTVTLRRGSKESTMVYDASCNSVRYRGASYAVGES
MNMFGKMVTVGDGSIVLVFSDVVAQVFPFTVAQALSVVGTSRSQFMRNQV
CNTANMIASKTTGAQGDTSAHIWVHDTDLGTTDEITMVVHSVDEDSTFAT
MSLGVLHTDASQNKFIEPALRLSSTSTTISAQDDTDATRSALFETTGLPF
DSDESAVYFGAPKQFRIKFSDGSLFVFAGAKLGRCRRIHHQDRVQ*
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mRNA from alignment at P-littoralis_Contig154:363460..364678+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig154.99.1 ID=mRNA_P-littoralis_Contig154.99.1|Name=mRNA_P-littoralis_Contig154.99.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1219bp|location=Sequence derived from alignment at P-littoralis_Contig154:363460..364678+ (Pylaiella littoralis U1_48)
GTCGTGTTTATATCATATCACAACATGCAGTTCGATCTCATCTCGGGCTA CTCTGCGCGCGCTTCCTGGGCGGGTGGGCTAAGGGTGGCGATTATCGAGT ACTACGCCGACAATTTCCGCACCGTATCCGAGTGCGAAGGAAACGACCAC TTTGTGGTTGTCGTGAACCTTACGCCTGGGACGCGCTACACCCTACAGTT AACCTTACAGGACGGAACGAGATGCCGCGATGGCTTCGAAACCTGCCCCG CAGACGCGCCCTGCCTTGCAAACCTGTACCAGTCGACGCGCCGCAAGGAT GGGGTGCACGATACCACCAGGTTCAACAAGGCTACTCACGACGCCTTTGT CGAGCACTTCGCTGAATTCGTGGAGGCGGGCGACAAGATTCTTGCACCCG TTTCTCTCCGAGGCGCGAAGAAGAACATCCTAACGACGGCCGTGACGGAC GGTACAACCCTTGACAGAGTGGACGACTCCAGCCTCTTTCTCCCCTTCTC GCAGAGTCACGACAACGTGCAGACCGTCACCCTTCGCCGCGGCTCGAAGG AGTCTACCATGGTGTACGACGCATCTTGCAACTCGGTTCGTTACCGCGGC GCGTCGTACGCGGTGGGCGAGAGCATGAACATGTTCGGCAAGATGGTCAC TGTTGGCGACGGTTCGATTGTTTTGGTGTTTTCGGACGTCGTTGCGCAGG TTTTCCCATTCACAGTTGCGCAGGCTCTTTCTGTCGTGGGCACGAGCAGG TCGCAGTTCATGCGGAACCAGGTGTGCAACACAGCCAATATGATTGCCAG TAAGACAACAGGTGCGCAAGGTGACACGTCTGCCCATATCTGGGTGCACG ACACCGACCTCGGCACAACGGACGAGATCACCATGGTCGTCCACTCAGTG GACGAGGATTCAACGTTCGCAACAATGTCTCTGGGTGTGCTCCACACAGA CGCATCCCAAAACAAGTTTATCGAGCCTGCGCTGCGGCTTAGTAGCACCA GCACTACAATTTCTGCCCAGGACGACACAGATGCCACGCGATCGGCGCTC TTCGAGACCACGGGCCTCCCGTTCGACTCGGACGAAAGCGCCGTGTACTT CGGGGCGCCCAAGCAGTTTCGAATCAAGTTTAGCGATGGCTCGCTGTTCG TTTTTGCAGGTGCAAAGCTCGGACGGTGCCGGCGGATACATCACCAAGAC CGAGTTCAGTGACTTAACG
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Coding sequence (CDS) from alignment at P-littoralis_Contig154:363460..364678+

>mRNA_P-littoralis_Contig154.99.1 ID=mRNA_P-littoralis_Contig154.99.1|Name=mRNA_P-littoralis_Contig154.99.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1188bp|location=Sequence derived from alignment at P-littoralis_Contig154:363460..364678+ (Pylaiella littoralis U1_48)
ATGCAGTTCGATCTCATCTCGGGCTACTCTGCGCGCGCTTCCTGGGCGGG
TGGGCTAAGGGTGGCGATTATCGAGTACTACGCCGACAATTTCCGCACCG
TATCCGAGTGCGAAGGAAACGACCACTTTGTGGTTGTCGTGAACCTTACG
CCTGGGACGCGCTACACCCTACAGTTAACCTTACAGGACGGAACGAGATG
CCGCGATGGCTTCGAAACCTGCCCCGCAGACGCGCCCTGCCTTGCAAACC
TGTACCAGTCGACGCGCCGCAAGGATGGGGTGCACGATACCACCAGGTTC
AACAAGGCTACTCACGACGCCTTTGTCGAGCACTTCGCTGAATTCGTGGA
GGCGGGCGACAAGATTCTTGCACCCGTTTCTCTCCGAGGCGCGAAGAAGA
ACATCCTAACGACGGCCGTGACGGACGGTACAACCCTTGACAGAGTGGAC
GACTCCAGCCTCTTTCTCCCCTTCTCGCAGAGTCACGACAACGTGCAGAC
CGTCACCCTTCGCCGCGGCTCGAAGGAGTCTACCATGGTGTACGACGCAT
CTTGCAACTCGGTTCGTTACCGCGGCGCGTCGTACGCGGTGGGCGAGAGC
ATGAACATGTTCGGCAAGATGGTCACTGTTGGCGACGGTTCGATTGTTTT
GGTGTTTTCGGACGTCGTTGCGCAGGTTTTCCCATTCACAGTTGCGCAGG
CTCTTTCTGTCGTGGGCACGAGCAGGTCGCAGTTCATGCGGAACCAGGTG
TGCAACACAGCCAATATGATTGCCAGTAAGACAACAGGTGCGCAAGGTGA
CACGTCTGCCCATATCTGGGTGCACGACACCGACCTCGGCACAACGGACG
AGATCACCATGGTCGTCCACTCAGTGGACGAGGATTCAACGTTCGCAACA
ATGTCTCTGGGTGTGCTCCACACAGACGCATCCCAAAACAAGTTTATCGA
GCCTGCGCTGCGGCTTAGTAGCACCAGCACTACAATTTCTGCCCAGGACG
ACACAGATGCCACGCGATCGGCGCTCTTCGAGACCACGGGCCTCCCGTTC
GACTCGGACGAAAGCGCCGTGTACTTCGGGGCGCCCAAGCAGTTTCGAAT
CAAGTTTAGCGATGGCTCGCTGTTCGTTTTTGCAGGTGCAAAGCTCGGAC
GGTGCCGGCGGATACATCACCAAGACCGAGTTCAGTGA
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