mRNA_P-littoralis_Contig154.68.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig154.68.1
Unique NamemRNA_P-littoralis_Contig154.68.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig154.68.1 vs. uniprot
Match: D7FR49_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR49_ECTSI)

HSP 1 Score: 240 bits (613), Expect = 3.060e-75
Identity = 115/153 (75.16%), Postives = 126/153 (82.35%), Query Frame = 1
Query:  322 MEPTNGGEESGAATPSHRILVPLCGKTLDMPYLAQRGHEVVGVDGVEAAAWQLQRDSWLKFEITQQEPSGAGCSNRPRFIAAPAFEKKRSGYVFKTDTTGTGYYLDRKSVKWFQDTKKRISVVISDFLHLTRGDIGTFDRVWDRGALVALRPE 780
            M PT+G +   AA    R+LVPLCGKT+DMPYLAQ+GHEVVGVDGVEAA WQLQRDSWLKFE  Q EPS      RP FI AP FEK+RSGYVFKTDT GTGYYLD+K+VKWF+DT+KRISVV+SDFL L  GDIG FDRVWDRGALVALRPE
Sbjct:    1 MRPTDGQKPGAAA----RVLVPLCGKTVDMPYLAQKGHEVVGVDGVEAAVWQLQRDSWLKFETFQAEPSAESSGRRPGFIPAPTFEKRRSGYVFKTDTLGTGYYLDKKAVKWFRDTRKRISVVVSDFLFLAPGDIGMFDRVWDRGALVALRPE 149          
BLAST of mRNA_P-littoralis_Contig154.68.1 vs. uniprot
Match: A0A835ZBL3_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBL3_9STRA)

HSP 1 Score: 133 bits (334), Expect = 4.650e-33
Identity = 69/149 (46.31%), Postives = 86/149 (57.72%), Query Frame = 1
Query:  346 ESGAATPSHRILVPLCGKTLDMPYLAQRGHEVVGVDGVEAAAWQLQRDSWLKFEITQQEPSGAGCSNRPR-----FIAAPAFEKKRSGYVFKTDTTGTGYYLDRKSVKWFQDTKKRISVVISDFLHLTRGDIGTFDRVWDRGALVALRP 777
            E  A  P     VPLCGK++D+PYLA+RGHE VGV+GVEAA W LQR++WL F        G      P+     F+ A AF   R GYVF     G GYY D   +    + +  + VV+ DFL +T  +IGTFD  WDRG+LVAL P
Sbjct:   38 EPAAPPPPPLAQVPLCGKSVDLPYLAKRGHETVGVEGVEAAVWALQRENWLDFTRVLVPRGGXXXXXPPQHDSGDFLPADAFGGARKGYVFTRGAHGQGYYRDAPPLLAAVERRLPLRVVVGDFLEVTPAEIGTFDAAWDRGSLVALPP 186          
BLAST of mRNA_P-littoralis_Contig154.68.1 vs. uniprot
Match: A0A8J6CB01_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CB01_DIALT)

HSP 1 Score: 103 bits (258), Expect = 1.020e-21
Identity = 68/212 (32.08%), Postives = 95/212 (44.81%), Query Frame = 1
Query:  247 QWAAGRAAWHREKPNALLVDNYDRFMEPTNGGEESGAATPSHRILVPLCGKTLDMPYLAQRGHEVVGVDGVEAAAWQLQRDSWLKFEITQQEPSGAGCSNRPRFIAAPAFEKKRSGYVFKTDTTGTGYYLDR-----------------------KSVKWF------------QDTKKRISVVISDFLHLTRGDIGTFDRVWDRGALVALRP 777
            +W A    +H+   +  LV +                A  +HR+LVPLCGKT+DMP+LA+ GHEVVGV+GV  AA    +D      +     + AG +    FIAA AF   R+GYVF T     GY+ DR                       +   W             Q  +  + + I+D+  + R +IG+F R WDRG LVA+ P
Sbjct:   43 KWEANDIKFHKRDVHPTLVAHIGALFPD---------APAAHRVLVPLCGKTVDMPFLARAGHEVVGVEGVPLAAEAFSKDQPHLRMVRCAPGAPAGAAAPADFIAADAFAGPRAGYVFTTRDGKLGYHRDRPQPTPAAAATQPAAAPAQRAALGERADWLSTGGTAAARADQQAQRGTVWLAIADWFDVRRDEIGSFGRAWDRGGLVAVPP 245          
BLAST of mRNA_P-littoralis_Contig154.68.1 vs. uniprot
Match: A0A7M7P8L5_STRPU (Thiopurine S-methyltransferase n=1 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7P8L5_STRPU)

HSP 1 Score: 88.6 bits (218), Expect = 5.200e-17
Identity = 56/176 (31.82%), Postives = 82/176 (46.59%), Query Frame = 1
Query:  250 WAAGRAAWHREKPNALLVDNYDRFMEPTNGGEESGAATPSHRILVPLCGKTLDMPYLAQRGHEVVGVDGVEAAAWQLQRDSWLKFEITQQEPSGAGCSNRPRFIAAPAFEKKRSGYVFKTDTTGTGYYLDRKSVKWFQDTKKRISVVISDFLHLTRGDIGTFDRVWDRGALVALRP 777
            WAAGR ++HR   +  L++   + +             PS R+LVPLCGKTLDM +LA  GHEVVGV+GV  A  +  ++  L ++                                ++D  G       K  K F++  K+I + + DF   ++   G FD +WDRGALVA+ P
Sbjct:   11 WAAGRTSFHRTFVDKSLLEFQSKLL----------VKKPS-RVLVPLCGKTLDMKWLADEGHEVVGVEGVLQAVMEFFQEQELPYK--------------------------------ESDVPGL------KGAKLFENEDKKIKIYLCDFFQFSKDIAGQFDAIWDRGALVAIDP 137          
BLAST of mRNA_P-littoralis_Contig154.68.1 vs. uniprot
Match: A0A6H5KQP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQP9_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 1.590e-16
Identity = 39/62 (62.90%), Postives = 46/62 (74.19%), Query Frame = 1
Query:  268 AWHREKPNALLVDNYDRFMEPTNGGEESGAATPSHRILVPLCGKTLDMPYLAQRGHEVVGVD 453
            AWHREKPN +LV NYD FM PT+G +   AA    R+LVPLCGKT+DMPYLAQ+G   +G D
Sbjct:   61 AWHREKPNEILVKNYDDFMRPTDGQKPGAAA----RVLVPLCGKTVDMPYLAQKGAPKLGSD 118          
BLAST of mRNA_P-littoralis_Contig154.68.1 vs. uniprot
Match: UPI001BB0EF63 (probable thiopurine S-methyltransferase n=3 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB0EF63)

HSP 1 Score: 84.7 bits (208), Expect = 1.230e-15
Identity = 54/176 (30.68%), Postives = 83/176 (47.16%), Query Frame = 1
Query:  250 WAAGRAAWHREKPNALLVDNYDRFMEPTNGGEESGAATPSHRILVPLCGKTLDMPYLAQRGHEVVGVDGVEAAAWQLQRDSWLKFEITQQEPSGAGCSNRPRFIAAPAFEKKRSGYVFKTDTTGTGYYLDRKSVKWFQDTKKRISVVISDFLHLTRGDIGTFDRVWDRGALVALRP 777
            W+ GR ++HR   +  L++   +F+             PS R+LVPLCGKTLDM +LA+ GHEVVGV+GV  A  +  ++  L ++                                ++D  G       K  K F++  K+I + + DF   ++   G FD +WDRG+LVA+ P
Sbjct:   11 WSKGRTSFHRTFVHKSLLEFQSKFL----------VKKPS-RVLVPLCGKTLDMRWLAEEGHEVVGVEGVLQAVMEFFQEQDLSYK--------------------------------ESDIPGI------KDGKLFENEDKKIKIYLCDFFKFSKDFAGQFDAIWDRGSLVAVDP 137          
BLAST of mRNA_P-littoralis_Contig154.68.1 vs. uniprot
Match: A0A7M7PA33_STRPU (Thiopurine S-methyltransferase n=1 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7PA33_STRPU)

HSP 1 Score: 84.7 bits (208), Expect = 1.310e-15
Identity = 53/176 (30.11%), Postives = 81/176 (46.02%), Query Frame = 1
Query:  250 WAAGRAAWHREKPNALLVDNYDRFMEPTNGGEESGAATPSHRILVPLCGKTLDMPYLAQRGHEVVGVDGVEAAAWQLQRDSWLKFEITQQEPSGAGCSNRPRFIAAPAFEKKRSGYVFKTDTTGTGYYLDRKSVKWFQDTKKRISVVISDFLHLTRGDIGTFDRVWDRGALVALRP 777
            WA GR ++HR   +  L++   + +             PS R+LVPLCGKTLDM + A+ GHEVVGV+GV  A  +  ++  L ++                                ++D  G       K  K F++  K+I + + DF   ++   G FD +WDRG+LVA+ P
Sbjct:   11 WAEGRTSFHRTYVHKSLLEFQSKLL----------VKKPS-RVLVPLCGKTLDMRWFAEEGHEVVGVEGVLQAVMEFFQEQELPYK--------------------------------ESDVPGL------KGAKLFENEDKKIKIYLCDFFQFSKDFAGQFDAIWDRGSLVAIDP 137          
BLAST of mRNA_P-littoralis_Contig154.68.1 vs. uniprot
Match: A0A7S2MYV9_9DINO (Hypothetical protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2MYV9_9DINO)

HSP 1 Score: 84.0 bits (206), Expect = 2.130e-15
Identity = 61/186 (32.80%), Postives = 88/186 (47.31%), Query Frame = 1
Query:  271 WHREKPNALLVDNYDRFMEPTNGGEESGAATPSHRILVPLCGKTLDMPYLAQRGHEVVGVDGVEAAAWQLQ---RDSWLKFEITQQEPSGA-GCSNRPRFIAAPAFEKKRSGYVFKTDTTGTGYYLD-----RKSVKWFQDTKKRISVVISDFLHLTRGDI--------GTFDRVWDRGALVALRP 777
            +H +  N LL    ++ M          A  P+  +LVPLCGK++DMP+L ++G  VVGV+GV     +L+   R     F+       GA G +    F  A AF+ +R GYVF T   G GYY D     R +V+    T     ++  D   +T   I        G FD ++DR +LVA+ P
Sbjct:   25 FHLKTVNPLL----EKHMHLLRPATPPKADAPTLSVLVPLCGKSIDMPFLCEQGFRVVGVEGVLRPILELRAEHRQRLKGFKARNVLSHGADGWAETVDFQPAEAFQGRRPGYVFTTGDRGLGYYADSPAVFRGTVRAGNRTTVPFEILQGDMFQVTPELIRVATYEERGQFDAIYDRSSLVAIPP 206          
BLAST of mRNA_P-littoralis_Contig154.68.1 vs. uniprot
Match: A0A7M7GGJ0_STRPU (Thiopurine S-methyltransferase n=3 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7GGJ0_STRPU)

HSP 1 Score: 81.6 bits (200), Expect = 2.960e-14
Identity = 52/176 (29.55%), Postives = 79/176 (44.89%), Query Frame = 1
Query:  250 WAAGRAAWHREKPNALLVDNYDRFMEPTNGGEESGAATPSHRILVPLCGKTLDMPYLAQRGHEVVGVDGVEAAAWQLQRDSWLKFEITQQEPSGAGCSNRPRFIAAPAFEKKRSGYVFKTDTTGTGYYLDRKSVKWFQDTKKRISVVISDFLHLTRGDIGTFDRVWDRGALVALRP 777
            WA GR ++H    +  L++   + +             PS R+LVPLCGKTLDM +LA+ GHEVVGV+GV  A  +   +  L ++                                ++D  G       K  K F++  K+I + + DF   ++   G FD +WDR +LVA+ P
Sbjct:   44 WAEGRTSFHGTNVHKSLLEFQSKLL----------VKKPS-RVLVPLCGKTLDMRWLAEEGHEVVGVEGVIQAVMEFFEEQELPYK--------------------------------ESDVPGI------KGAKLFENEDKKIKIYLCDFFQFSKDIAGQFDAIWDRASLVAIDP 170          
BLAST of mRNA_P-littoralis_Contig154.68.1 vs. uniprot
Match: A0A1S3HS60_LINUN (probable thiopurine S-methyltransferase n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3HS60_LINUN)

HSP 1 Score: 82.8 bits (203), Expect = 2.970e-14
Identity = 50/175 (28.57%), Postives = 77/175 (44.00%), Query Frame = 1
Query:  247 QWAAGRAAWHREKPNALLVDNYDRFMEPTNGGEESGAATPSHRILVPLCGKTLDMPYLAQRGHEVVGVDGVEAAAWQLQRDSWLKFEITQQEPSGAGCSNRPRFIAAPAFEKKRSGYVFKTDTTGTGYYLDRKSVKWFQDTKKRISVVISDFLHLTRGDIGTFDRVWDRGALVAL 771
            +W  G+A WH+   + LLV + DR +          A   + +I  PLCGK+LDM +LA +GH VVGV+  E A      ++ +++ +T                  PA + K                        +QD   +I + + DF   +R   G FD +WDRG+LVA+
Sbjct:  116 KWVEGQARWHKTVVHQLLVKHLDRLL----------AGKSNAKIFFPLCGKSLDMKWLADQGHTVVGVEASELAVQSFFTENDIQYTVTD----------------VPAIDGKL-----------------------YQDLDNKIRIYVGDFFKFSREMEGEFDSIWDRGSLVAI 241          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig154.68.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FR49_ECTSI3.060e-7575.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZBL3_9STRA4.650e-3346.31S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A8J6CB01_DIALT1.020e-2132.08Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A7M7P8L5_STRPU5.200e-1731.82Thiopurine S-methyltransferase n=1 Tax=Strongyloce... [more]
A0A6H5KQP9_9PHAE1.590e-1662.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI001BB0EF631.230e-1530.68probable thiopurine S-methyltransferase n=3 Tax=Ly... [more]
A0A7M7PA33_STRPU1.310e-1530.11Thiopurine S-methyltransferase n=1 Tax=Strongyloce... [more]
A0A7S2MYV9_9DINO2.130e-1532.80Hypothetical protein (Fragment) n=1 Tax=Brandtodin... [more]
A0A7M7GGJ0_STRPU2.960e-1429.55Thiopurine S-methyltransferase n=3 Tax=Strongyloce... [more]
A0A1S3HS60_LINUN2.970e-1428.57probable thiopurine S-methyltransferase n=1 Tax=Li... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig154contigP-littoralis_Contig154:213697..218923 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog6500.XP_005098542.1
Preferred nameTPMT
PFAMsTPMT
Model size985
Max annot lvl33208|Metazoa
KEGG rclassRC00003,RC00980,RC02277
KEGG koko:K00569
KEGG ReactionR08236,R08239,R08246
KEGG Pathwayko00983,map00983
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006807,GO:0008119,GO:0008144,GO:0008150,GO:0008152,GO:0008168,GO:0008172,GO:0008757,GO:0009987,GO:0016740,GO:0016741,GO:0017144,GO:0032259,GO:0034641,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048037,GO:0050662,GO:0071704,GO:1901360,GO:1901681,GO:1904047
Exons7
Evalue4.89e-16
EggNOG OGs2CMWS@1|root,2QSF5@2759|Eukaryota,38HDT@33154|Opisthokonta,3B9J5@33208|Metazoa,3CVW2@33213|Bilateria
Ec32 ortholog descriptionS-adenosyl-L-methionine-dependent methyltransferase
Ec32 orthologEc-09_003500.1
EC2.1.1.67
DescriptionThiopurine S-methyltransferase
Cds size672
COG categoryS
BRITEko00000,ko00001,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig154.68.1prot_P-littoralis_Contig154.68.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig154 214540..218806 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789737.7694554-UTR-P-littoralis_Contig154:213696..2138031680789737.7694554-UTR-P-littoralis_Contig154:213696..213803Pylaiella littoralis U1_48UTRP-littoralis_Contig154 213697..213803 -
1680789737.781641-UTR-P-littoralis_Contig154:214450..2145391680789737.781641-UTR-P-littoralis_Contig154:214450..214539Pylaiella littoralis U1_48UTRP-littoralis_Contig154 214451..214539 -
1680789737.8536232-UTR-P-littoralis_Contig154:218806..2189231680789737.8536232-UTR-P-littoralis_Contig154:218806..218923Pylaiella littoralis U1_48UTRP-littoralis_Contig154 218807..218923 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789737.7918327-CDS-P-littoralis_Contig154:214539..2145881680789737.7918327-CDS-P-littoralis_Contig154:214539..214588Pylaiella littoralis U1_48CDSP-littoralis_Contig154 214540..214588 -
1680789737.8019843-CDS-P-littoralis_Contig154:215543..2156291680789737.8019843-CDS-P-littoralis_Contig154:215543..215629Pylaiella littoralis U1_48CDSP-littoralis_Contig154 215544..215629 -
1680789737.8127434-CDS-P-littoralis_Contig154:217055..2172791680789737.8127434-CDS-P-littoralis_Contig154:217055..217279Pylaiella littoralis U1_48CDSP-littoralis_Contig154 217056..217279 -
1680789737.8231022-CDS-P-littoralis_Contig154:217750..2179131680789737.8231022-CDS-P-littoralis_Contig154:217750..217913Pylaiella littoralis U1_48CDSP-littoralis_Contig154 217751..217913 -
1680789737.8356516-CDS-P-littoralis_Contig154:218609..2186281680789737.8356516-CDS-P-littoralis_Contig154:218609..218628Pylaiella littoralis U1_48CDSP-littoralis_Contig154 218610..218628 -
1680789737.844195-CDS-P-littoralis_Contig154:218675..2188061680789737.844195-CDS-P-littoralis_Contig154:218675..218806Pylaiella littoralis U1_48CDSP-littoralis_Contig154 218676..218806 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig154.68.1

>prot_P-littoralis_Contig154.68.1 ID=prot_P-littoralis_Contig154.68.1|Name=mRNA_P-littoralis_Contig154.68.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=224bp
MSYLLHGHCLRAKSCSNSVLLPPLLLPLLLPLPLPVSLSLPLPQWAAGRA
AWHREKPNALLVDNYDRFMEPTNGGEESGAATPSHRILVPLCGKTLDMPY
LAQRGHEVVGVDGVEAAAWQLQRDSWLKFEITQQEPSGAGCSNRPRFIAA
PAFEKKRSGYVFKTDTTGTGYYLDRKSVKWFQDTKKRISVVISDFLHLTR
GDIGTFDRVWDRGALVALRPERS*
back to top

mRNA from alignment at P-littoralis_Contig154:213697..218923-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig154.68.1 ID=mRNA_P-littoralis_Contig154.68.1|Name=mRNA_P-littoralis_Contig154.68.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5227bp|location=Sequence derived from alignment at P-littoralis_Contig154:213697..218923- (Pylaiella littoralis U1_48)
CACCTCTGCCGCACACACGAAGCGATCCCATGTCCGCGCTTACACGGACC TCGCTAAGGCTGCTTCGGCTTCCTCATGCAGTTGTAGCGCCCCGAAAGTT GAGCGTTGCATCACGGAATGTCGTATCTTTTACACGGGCATTGTCTCCGA GCGAAAAGCTGCTCCAATTCCGTTCTATTGCCGCCGCTGCTGCTGCCGCT GCTACTGCCGCTGCCGCTGCCGGTGTCATTGTCACTGCCGCTGCCGCAGC GGCCACCCTGTGCGACGAAGACAGACTGGAACGATGGAACGACAGATGGG CTGCGGGGAGAGCGGTGCGCATATTGAAAACTGCTGTAACTCGCTATCAT ATCGTATGGATATGATGATACTTCAGTATCAAACATGACAGAGATCTGTT CCGTCCCTCCCCCTCGGTGTGTTGTCGACAAAAGAAAAATGACCACGTCT ATCATTATCACAGGAAGCTACGTATTGATGTGATATCATACAATATACGG AGTACGAAGTAGCACATGATACTTCGAAGGACAAGTACAACACAAGGAGA ACGTTGACGTGATATCATACATATATCAATTCCCCGACTCAAACGAACAC TCTCAGAAAAGTACCTGGGAGGAGCAACTACTGCTACTGACTGAAAAATT TCGCGAACAACCCAAGATTTTTCTTAGAGCAACTATCTGCCATGTAATCT GGTTGCATTTGACAATTCAACTGCTGTCCAAGGTGAATTCAACCAGTAGG GGTATCTGTGTCGTCGTCCCATCTTTCACAATTTTTTTATGATTTTGCCT TATGCCAAAAAGTTGTCGCTGGGTTTTTACGTCTTTCCCACAAGGATGTC CGTTTCACCGCCGTTTGTGCAGCACATCAGAGGGACTTCTGTACGAGGTA CGAAGTAAAACATTTCTTCCCAACAGAATTGCGGGTGCAATGCCACCGTC CGATCATCCCTCAAACTTTTCTATCTCGTGCGTTCGTGTGGATGTCGCTC AAATCCACAGGCATGGCACCGCGAAAAGCCGAACGCTCTCCTCGTTGACA ACTACGATCGGTTCATGGAACCTACAAACGGTGGAGAGGAGTCAGGAGCT GCAACCCCAAGCCACCGTATCTTAGTCCCACTATGTGGCAAGACCCTTGA CATGCCCTACCTGGCACAACGCGGTGAGCCTTAATCACCCCGCAACCATC GCTCTATTCCACCGTTGCGACTACTTCCTGGCCCTTTTGTGCTGTACATG TCCTGCTCGTGTGTGACGTGCCGTCACCATTCATGTTCCGTAGACGGGGT CAAGTTAATGTGCAAGGAATTTCTTTTTATCTATGCTCACGGGTTGCGCG AAGAGGAGAACCCTGTGCATCGATTGTTCTAACCCGGACTCCTTTGCAAA ATGATGGTATATCCCGAGGTTGAAACATGTCAAGACCCGCGTCGTTTTCT TCCCATGCTCCACTGCCTTCCTACACGTGAATGTTGCCTTGCTCACGAGC TGCTACACACCGCAGCAAGTAACCAGCTTCTGTAAGCTGCTCGAGAGCAC CCACACTGCTGCAAGCAATTCTTGTGTTGCGAACAACTTTCTTTTCGTCG TGCGCGTAACTGTTCGTGCATGCGCTCTTGTACGCCGCCTGAAGGACACG AAGTTGTAGGCGTCGATGGTGTGGAAGCAGCTGCTTGGCAGCTGCAGCGT GATTCTTGGCTGAAGTTTGAGATCACCCAGCAGGAACCGTCGGGAGCTGG GTGTAGCAATCGACCGAGGTTCATCGCGGCGCCGGCATTCGAGAAGAAGC GCTCGGGCTACGTCTTCAAGACCGACACAACGGGCACCGGCTATTATTTA GACAGGAAGTCAGTTAAGGTGATTCTCAAGACGAAGCGACTTTAACCTTG AGTTTCCCAGAAAAGTTGTGTTAAGCATATTGAATGCAGTCAATTCCAAG AGAATGAATCCCGCTCGGCAGAGGTTTGAAGGGTATAGACACATACCCTC TAGAAGTTAATCCTCCCATAGTAGAAAAACACTCCTCAGACGTTAGAAAA CTTCAGTTAACACATGACTGACCGGTACCAACCCACCCCAGCCCTACTTA CCCTCAGGGTCGGTCTTAGCAGAACTTCTCCCAATACAAAATCGAAATTC GAGAATCGAAAATGGCTCTCATTGGGCGATGTGCGATGTTAGCCCTAAAG ATTTTAGAAATGACCCTTCTGTTCCGAGAAGCTAATCCTATTCACGAAAT CAAAAAATTTGCTGAATGGATCGAAAATGCGGTAAAAAAAACGAACAGAC CTAGAACAAGAGCAGAAAGGTGTGCTGTGCTTTCCAGGTGCACACTGGTG CACATCCACATACCTTCATTTTGATAGTCACAGCATAACGTGTAGACTCC CTCCGAACAAATTTGATGCCTCTGCAGAAAGCTGCTCACCCCGTGAGTAA GCACTTTGTTCAAGCGGATTCTGGTGATAATCCGAAGGGCAGCACTATAG TGTGCATAAGTGTGCAGAAAGTTGTTGGTCATGGCGGCTGACATTTTGGG CCTTTGTGACCTCCACACGGGTAGGTAGGCAGGGTGTTCAACCCGCATCA ACACATTTCTTGCTGAGTTCTTCGGTTGTCGATCCCAAATAAAGTACTGC CAACGCGCCTGAGTCAGGCCGACGTGGAGCAACTACCCAGCACTGGTTTA GAGGCACGGTAGCTCCCGCACTAGTCCTGGAAATTACCGCAGCATGCATT TCACAACCATCTGTCCTCCGACTTGCTGGTCGTTCCTCTCTTTTTATTTT TTTTGTGCCTCCGCTTTTTAGATTTTAGATGAAGGCAGCTGCGGCACATT GTACACGACCCGCTTTCTAAAATCGAAACCTAATTCCGATTTTCGATTTT CGACTGGTAGAATTTCTGGTAAGAATGACCCTCACCCTGTGACCCCAACC CTCACGACTAGCCGAAGTAGGGCCGATTTGAATCGGGAACGCGTCAAAAT CGCGTTGGCGCAATCAGTGGCGCCACGTTCTGTGTTGCGGACCACGAACA TGGCTCGGCCGACCTGTAGCTCAGATCACGACCTTTAGAAGATCCACCAA CAGATCGAAAAAGCTACTGGGATTGAAGTCCACACTGCTACATCGCAACA CAAACGCTTGCACGTGAAGAACTCTCCGGGATTGCTTGCTGCTTTGCTTG CTGCTATGGCCGTTATCTTGTCCAACCGCCCTTGCCTTACAGTCACTCCT CCGTGTTTGGCAATGCTGGCTTTCCGCCAACTACTCACACGCAGTGGTTT CAAGACACGAAGAAGAGAATTTCCGTAGTTATCTCGGATTTCCTCCATCT AACACGAGGCGACATCGGCACGTTTGACAGGTAGGTTTATATTGTCGGAT GGGGCTACTGTTCCAAGCGGGCATAGCCCTACTGCTGTAGATCTAGGTTG TCGGAGTCAACAAGCAAAAACGTTTGGGTGGCTTCGGCCGCCATGATAAT TTCAGTGGTACGGTAATGGACAAGAGAAGTGTGTCATGGTTCGTTTGCGT ATGGGCGCAAACAGAAGCATCGTTGCTGGAAGAGGAAAGTCAGAAATAAG AACCAAAGTTGAAAAAACGAAGGTGTCGCTCAACCGTAGGGCCAAAGGGT GTCCTGAAAAACTGGGCATGCAGAGGTCGTGATAAAAAGTGCCGACTGTC TAAAGATGACGATGGAGTATAGCACAGATATTGCCACACCGCTAGAACGC TGTTGACAAAATTGTGGACGAATGAAAGACGGATTGTGCGCGAGTGTCAA TAATTATGAGGGTAGGACTACTTGCCTTCTTTGTGGTGAACTTGATGTTG AAACGTAAAACAAGTATTCCACCAAGTCAATGCGTAGTCTAGTCTACACA TTGGCGGCTCAGACAAAATGGCGGCTTTCACTGAATAGTGCTTGAGTCAG ACTCCGCACGAAAATGCATGCCTTTTTTCTGTGGGCGGATATTCCGCGAG GTCTTCAGGAAAAAAGTACTCCAAAGTATACCGTACCTGTTCATTACATG TAAAACTTGGAGGACTTGTAAAATGGTGCTCGGCAGAAACGAAAAGGAGC TATTTCAAGGTTTCCCATCTGACCGGGACGAAAATGACTGCTACTCGAGC GAGATGAAAACAATATGAAAGTGCATCTTCAGCCCCGAAAATGTTTCCAC TATTCGGGTCCCCACCCCGCTTTCACAATCTGATCGACGAAAAAAATCGC CGTTGTTGAGATGTCCCCTAACAAGGGACCTGGTACGATGCTGCTTTGCC GTCGTCTGCAACACTTGTTTCGTTTGCGGGGACAGGGTGTGGGACAGAGG AGCGCTGGTCGCGCTGAGGCCCGAAAGATCGTGAAGAGTACGTCGCGTGC TGCGATAGTGTGCTCGTGCCCGGGGGCAGCATCCTTCTCGCGACCCTGGT GTACGACCAGAGCTCGAAGAGAGGTGCAGATTAGTCATTCCACCATTGTC GAAAACTGGGTGTTCCAAGAGACCGAACAAATTTTGTAGTTGATGGAAAA AACAAAGCGGCCTGCTTTTGGTCAGTACTTGTTGGGTATGATACATTCCT TAACAAATTTTGCGAAATTGCACACCGCAGCAGTAGTGTCGGAATGCACA CGGGTAGACTGGTCGGCGATAGATGGAGAATACAAAGTCGGCGCCTCGTG AGCACCTCGCGAAGACAGTCACCGATGATACAACGCCACGGAAGATAAAT CATTACATCTTCCGCTGACGAGACCGTCGGCCGGAACTGTACCTGTGTAC AAGGCAGTCACTAAGATAGACTACCAAACCCACTGTTAGCTACCGACCAC ACACAAGATACGACAGCGAACGCAACCATCACAACACCCATTTGTACGAA ATACGCGCTCGTTAGCTCCTCCTTTCTCCATCATCTCGCCGAGGTTAAAC GACTCTACGGAGGCAAGCTAGGCGAAACTTCGGAGTACATCAAAAAAACT TTCATTTGCCAGGGTAGTTTGTCCTATATATAATAATTTAGATAATCTAC CAAAATTCACGTGCAGCTGCCAACCAAACACAAGATACATCACACCCATT TGCACGAAATACGCTGTCAGGTCCTCCTTTCTCCATTCCTCTGGCCGAGG TAAAACGCCTCTACGGCGGTAAGCTAGGCTACACGGTCGAGACGCTGAGC TCGGTTGACGCCCGAAAAGACTACCAG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig154:213697..218923-

>mRNA_P-littoralis_Contig154.68.1 ID=mRNA_P-littoralis_Contig154.68.1|Name=mRNA_P-littoralis_Contig154.68.1|organism=Pylaiella littoralis U1_48|type=CDS|length=672bp|location=Sequence derived from alignment at P-littoralis_Contig154:213697..218923- (Pylaiella littoralis U1_48)
ATGTCGTATCTTTTACACGGGCATTGTCTCCGAGCGAAAAGCTGCTCCAA
TTCCGTTCTATTGCCGCCGCTGCTGCTGCCGCTGCTACTGCCGCTGCCGC
TGCCGGTGTCATTGTCACTGCCGCTGCCGCAATGGGCTGCGGGGAGAGCG
GCATGGCACCGCGAAAAGCCGAACGCTCTCCTCGTTGACAACTACGATCG
GTTCATGGAACCTACAAACGGTGGAGAGGAGTCAGGAGCTGCAACCCCAA
GCCACCGTATCTTAGTCCCACTATGTGGCAAGACCCTTGACATGCCCTAC
CTGGCACAACGCGGACACGAAGTTGTAGGCGTCGATGGTGTGGAAGCAGC
TGCTTGGCAGCTGCAGCGTGATTCTTGGCTGAAGTTTGAGATCACCCAGC
AGGAACCGTCGGGAGCTGGGTGTAGCAATCGACCGAGGTTCATCGCGGCG
CCGGCATTCGAGAAGAAGCGCTCGGGCTACGTCTTCAAGACCGACACAAC
GGGCACCGGCTATTATTTAGACAGGAAGTCAGTTAAGTGGTTTCAAGACA
CGAAGAAGAGAATTTCCGTAGTTATCTCGGATTTCCTCCATCTAACACGA
GGCGACATCGGCACGTTTGACAGGGTGTGGGACAGAGGAGCGCTGGTCGC
GCTGAGGCCCGAAAGATCGTGA
back to top