prot_P-littoralis_Contig154.20.3 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig154.20.3
Unique Nameprot_P-littoralis_Contig154.20.3
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length413
Homology
BLAST of mRNA_P-littoralis_Contig154.20.3 vs. uniprot
Match: D7FUE5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUE5_ECTSI)

HSP 1 Score: 163 bits (413), Expect = 3.830e-44
Identity = 106/239 (44.35%), Postives = 138/239 (57.74%), Query Frame = 0
Query:  183 VAKEF-NEGVFTGEVVEV----KETGARGTLWKIGYEDGDMEDLNKEEMQKYMTLYKLLCDRFTLAKGRGVTAEDKAKEGLAEDDDXXXXXXXXXXXGEPNRSQSKKKGKSKKGGVCAQEKQVGAGVRKFFERYDEEFDGQVSKYLPPESDDEHGDLWLIKYEDGDEEHYDSGELAGAKALYKKRYALVKKKIPFDSSNPNKKENK----IILYGESPVGARGVFSTIKGYRHFKNKTS 412
            VAK+F   G++ GEV++V    K TG  GT WK+ YED DMEDL+++E Q     Y +L DRF  A+ + VT++D A+ GL   D             +PN                     VG  VRK F  YDEEFDG VSK+ PP+ DD HG+LWLIKY+DGD EH +S EL  AK LYKK Y LVKK++ F + NP  K +     + LYGE   G+R VF+TI GYR++K  ++
Sbjct:   51 VAKDFPGHGLYIGEVIKVNARAKVTG--GTTWKVLYEDQDMEDLDQQEFQTCAKAYDVLQDRFAAAQEKRVTSKDFAQAGLDVSDGDE----------QPNSL-------------------VGVRVRKLFPLYDEEFDGTVSKHFPPQEDDSHGNLWLIKYDDGDAEHMNSEELDEAKVLYKKHYGLVKKRVKFPA-NPGGKGSSTGATVTLYGEQIPGSR-VFATIAGYRNYKKAST 256          
BLAST of mRNA_P-littoralis_Contig154.20.3 vs. uniprot
Match: D7G948_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G948_ECTSI)

HSP 1 Score: 162 bits (411), Expect = 6.930e-44
Identity = 96/181 (53.04%), Postives = 114/181 (62.98%), Query Frame = 0
Query:  239 RFTLAKGRGVTAEDKAKEGLAEDDDXXXXXXXXXXXGEPNRSQSKKKG--KSKKGGVCAQEKQVGAGVRKFFERYDEEFDGQVSKYLPPESDDEHGDLWLIKYEDGDEEHYDSGELAGAKALYKKRYALVKKKIPFDSSN-------PNKKENKIILYGESPVGARGVFSTIKGYRHFKNK 410
            RF   KG  VTAED A E L ++D                +   K+KG  K K   + A EK VGAGVRK+F RYDEEFDG+VS YLPPESDDEHGDLWLIKYEDGD EH++  ELA A+ALY KR+AL KK + F +          N    KI ++GE+PVG RGVF TI+GYR  K+K
Sbjct:   71 RFEATKGGKVTAEDLANEDLHDEDVKAVSSESQSSTNGGGKGTPKRKGXGKVKAARLDACEKLVGAGVRKYFPRYDEEFDGEVSSYLPPESDDEHGDLWLIKYEDGDNEHFEPDELAEARALYNKRHALAKKVVTFPTKALFGGQAVTNLSLRKINVFGETPVGPRGVFCTIRGYRRSKSK 251          
BLAST of mRNA_P-littoralis_Contig154.20.3 vs. uniprot
Match: D8LNZ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNZ0_ECTSI)

HSP 1 Score: 99.4 bits (246), Expect = 1.580e-21
Identity = 54/89 (60.67%), Postives = 63/89 (70.79%), Query Frame = 0
Query:   25 GGAVDGGCMIGRKILKRLGDTVVNGHVKGYNPPSNGNAESWTLCYE------NPHSDEDSDEDEEVCRPELDKRLNLQAVKEREFPPAA 107
            GG  +GG ++GRKILKR GDTV++G+VK YNPP +G  ESWTL +E      +   D    EDEEV RPELDKRLNLQAV EREFP  A
Sbjct:    9 GGGSEGGRLVGRKILKRWGDTVISGYVKDYNPPVDGKQESWTLRHEKNFDGGDVEGDNSVGEDEEVDRPELDKRLNLQAVMEREFPSVA 97          
BLAST of mRNA_P-littoralis_Contig154.20.3 vs. uniprot
Match: A0A6H5JIC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIC1_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 9.440e-19
Identity = 53/86 (61.63%), Postives = 62/86 (72.09%), Query Frame = 0
Query:   25 GGAVDGGCMIGRKILKRLGDTVVNGHVKGYNPPSNGNAESWTLCYENPHSDEDSD------EDEEVCRPELDKRLNLQAVKEREFP 104
            GG  +GG ++GRKILKR GDTVV+G+VK YNPP +G  ESWTL +E    D D +      EDE V RPELDK+LNLQAV EREFP
Sbjct:   13 GGGSEGGRLVGRKILKRSGDTVVSGYVKDYNPPVDGKQESWTLRHEKKCDDGDGEGNNSGGEDEVVDRPELDKQLNLQAVMEREFP 98          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig154.20.3 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FUE5_ECTSI3.830e-4444.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G948_ECTSI6.930e-4453.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LNZ0_ECTSI1.580e-2160.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JIC1_9PHAE9.440e-1961.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 251..292
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 85..117
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 121..152
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 52..68
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 257..273
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 49..175
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..31
IPR000637HMG-I/HMG-Y, DNA-binding, conserved sitePROSITEPS00354HMGI_Ycoord: 106..117

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig154contigP-littoralis_Contig154:104097..123699 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig154.20.3mRNA_P-littoralis_Contig154.20.3Pylaiella littoralis U1_48mRNAP-littoralis_Contig154 102358..123995 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig154.20.3 ID=prot_P-littoralis_Contig154.20.3|Name=mRNA_P-littoralis_Contig154.20.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=413bp
MSVRSPAGMVRSPPGKARASPSSKGGAVDGGCMIGRKILKRLGDTVVNGH
VKGYNPPSNGNAESWTLCYENPHSDEDSDEDEEVCRPELDKRLNLQAVKE
REFPPAAAKKGRGRPRKDGSSPGNSLKQSRKSPAGNKKRMSSSSSSLASL
SPIPRPPQKKVKKGAASGVITLRGDDGDLRKRVAKEFNEGVFTGEVVEVK
ETGARGTLWKIGYEDGDMEDLNKEEMQKYMTLYKLLCDRFTLAKGRGVTA
EDKAKEGLAEDDDDDDLDDLDDGDGEPNRSQSKKKGKSKKGGVCAQEKQV
GAGVRKFFERYDEEFDGQVSKYLPPESDDEHGDLWLIKYEDGDEEHYDSG
ELAGAKALYKKRYALVKKKIPFDSSNPNKKENKIILYGESPVGARGVFST
IKGYRHFKNKTS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000637HMGI/Y_DNA-bd_CS