mRNA_P-littoralis_Contig154.103.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig154.103.1
Unique NamemRNA_P-littoralis_Contig154.103.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig154.103.1 vs. uniprot
Match: B5LWG6_9PHYC (Putative oligoribonuclease n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWG6_9PHYC)

HSP 1 Score: 209 bits (533), Expect = 1.200e-64
Identity = 98/186 (52.69%), Postives = 130/186 (69.89%), Query Frame = 2
Query:  122 LNVWDTLHVFLHHPYNVLLAKASTWCKGHFCSRSHRGNGLFDECNFSNVSHGNAERLLWNFSEYYSAHEIGNGRPERVATNFMNTTADSHGSILHPHDVAATRYSTTAPHKS-ALLAGSTVHFDRHFLIKEFPCLRKFLSHKSIDVTSILEAFKRFGKGQLRQKPQPGGTHRAGDDIMDSINLMKF 676
            LNVWD+LHV +HHP N+L+ K+S WCK  FCSRS+ GNGLFD+C++SN S  +A  L+ NF EYYS HEIG GRP   +  F + T+ ++G  L P+D++    + T   +S  LLAGSTV+FDR  + K FP LRK+LSHK++DVTS+LE  KRF    +  KP+P   HRA DDI+DS+ L K+
Sbjct:   52 LNVWDSLHVVIHHPINILMLKSSNWCKEKFCSRSYGGNGLFDDCHYSNTSITDATHLMLNFFEYYSTHEIGRGRPAHKSRTFFDRTSGANGMKLSPYDISCQVQNFTGTRRSQGLLAGSTVYFDRRIIEKHFPVLRKYLSHKNVDVTSLLETAKRFHPDLIENKPKPTMVHRAMDDILDSLTLYKY 237          
BLAST of mRNA_P-littoralis_Contig154.103.1 vs. uniprot
Match: Q6XM84_9PHYC (FirrV-1-A3 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM84_9PHYC)

HSP 1 Score: 177 bits (449), Expect = 4.050e-52
Identity = 91/196 (46.43%), Postives = 123/196 (62.76%), Query Frame = 2
Query:  122 LNVWDTLHVFLHHPYNVLLAKASTWCKGHFCSRSHRGNGLFDECNFSNVSHGNAERLLWNFSEYYSAHEIGNG--RPERVATNFMNTTADSHGSILHP-----HDVAATRYSTTAP----HKSALLAGSTVHFDRHFLIKEFPCLRKFLSHKSIDVTSILEAFKRFGKGQLRQKPQPGGTHRAGDDIMDSINLMKF 676
            LNVWD+LH+ +HHP N+L+ K+S WCK  FCS  + GNGLFDEC++S  S  +A   +  F EYY  H+IG G  RP     +F + T  ++G +L P      D+   +  TT P     K ALL GSTV+FDR  +   FP L+K+LSHK+IDVT++LE  KRF    ++ KP+P   HRA DDIMDS+ L ++
Sbjct:   41 LNVWDSLHLVIHHPINILMLKSSNWCKQRFCSLKYGGNGLFDECHYSETSIADATHKMLQFFEYYCTHDIGTGSRRPPPSERSFFDRTRGTNGVLLSPLRCTHRDIP--KQCTTTPGGSKKKQALLTGSTVYFDRRIIETHFPLLQKYLSHKNIDVTTMLETAKRFRPDLMQYKPKPLMKHRAMDDIMDSLALYRY 234          
BLAST of mRNA_P-littoralis_Contig154.103.1 vs. uniprot
Match: D8LPG5_ECTSI (EsV-1-139 n=2 Tax=root TaxID=1 RepID=D8LPG5_ECTSI)

HSP 1 Score: 160 bits (404), Expect = 5.720e-45
Identity = 79/190 (41.58%), Postives = 121/190 (63.68%), Query Frame = 2
Query:  122 LNVWDTLHVFLHHPYNVLLAKASTWCKGHFCSRSHRGNGLFDECNFSNVSHGNAERLLWNFSEYYSAHEIGNGRPERVATN--FMNTTADSHGSILHPHDVAATRYSTT---APHKSALLAGSTVHFDRHFLIKEFPCLRKFLSHKSIDVTSILEAFKRFGKGQLRQKPQPGGTHRAGDDIMDSINLMKF 676
            LN  D++ + LHHP+++LLA++S WC+  FC R   GNGLF+ C+FS +SH  AE  +WNF ++YS    G     ++ ++  F + T  ++G+ L   D +  R+      + +K  LLAGSTV+FDR FL+K FPCL+ F  ++ +DV++ LE  +R+      + P+  G+HRA DDI+DSI+LMKF
Sbjct:   72 LNEIDSMRLVLHHPHSILLARSSAWCRRKFCHRREGGNGLFEACHFSALSHHEAEYRMWNFFDHYSKDVGGRYDTTQITSSQPFFDRTLGANGTFLGASDASRCRHQQQPRRSNYKKCLLAGSTVYFDRIFLLKYFPCLKTFFHYRVVDVSTPLEMVRRWRPDVAAKLPRRNGSHRAYDDILDSISLMKF 261          
BLAST of mRNA_P-littoralis_Contig154.103.1 vs. uniprot
Match: A0A836CDV0_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDV0_9STRA)

HSP 1 Score: 108 bits (270), Expect = 4.480e-25
Identity = 74/214 (34.58%), Postives = 105/214 (49.07%), Query Frame = 2
Query:  122 LNVWDTLHVFLHHPYNVLLAKASTWCKGHFCSRSHRGNGLFDECNFSNVSHGNAERLLWNF---------SEYYSAHEIGNGRPERVATNFMNTTADSHGSILHPHDVAA--TRYSTTAPHKSA------------------LLAGSTVHFDRHFLIKEFPCLRKFLSHKSIDVTSILEAFKRFGKGQLRQKPQPGGTHRAGDDIMDSINLMKF 676
            L V DT HV +H P  VL A AS+WC  HF  R   GN LF +C  S +S   A  LL  F         +   +A E+    PE V    +  TA+  G ++   D  A       T  H++                   + AG + +FDR  ++  FP LRK+++HK+IDVTS+LE  +R+    LR  P P GTHRA  D+++SI L+++
Sbjct:   53 LTVQDTFHVIIHQPDRVL-AGASSWCAEHFGPRYAGGNDLFQQCRASVISEAEAGELLEAFIVKHAKPRKARAAAAAEV----PEAVVKRNVFKTAEF-GDVIEDGDAMAGDIEAQDTRRHRAGPAYGRPRPRAQQHDVYRVMFAGCSCYFDRGVILNRFPNLRKYIAHKTIDVTSVLEITRRWRPDLLRSLPAPQGTHRALPDVLESICLLRW 260          
BLAST of mRNA_P-littoralis_Contig154.103.1 vs. uniprot
Match: A0A835YX31_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX31_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 6.710e-20
Identity = 71/211 (33.65%), Postives = 100/211 (47.39%), Query Frame = 2
Query:  122 LNVWDTLHVFLHHPYNVLLAKASTWCKGHFCSRSHRGNGLFDECNFSNVSHGNAERLLWNFSEYYS------AHEIGNGRPERVATNFMNTTADSHGSILH-------PHDVAATRYS-------TTAPHKS------ALLAGSTVHFDRHFLIKEFPCLRKFLSHKSIDVTSILEAFKRFGKGQLRQKPQPGGTHRAGDDIMDSINLMKF 676
            L V DT HV +H P  VL A AS WC  HF  R   GN LF++   S +S   A  +L  F   ++      A     G PE      M  TA+  G ++        P    A R         T  P          + AG + +FDR  ++  FP LRK+++HK+IDVTS+LE  +R+    LR  P P G HRA  D+++S+ L+++
Sbjct:   64 LTVQDTFHVVVHQPPRVL-AGASRWCAEHFGPRYAGGNDLFEQSKASVISESAAGEMLEAFIVKHAKPRRARAAAAAEG-PEAACKRSMFKTAEF-GDVMEEVVMPEGPATEGAQRQQPXXXXXRTNRPKAQQHDVFRVMFAGCSCYFDRGAILARFPNLRKYVAHKTIDVTSVLEITRRWRPDLLRCLPAPQGVHRALPDVLESVCLLRW 271          
BLAST of mRNA_P-littoralis_Contig154.103.1 vs. uniprot
Match: A0A158PEJ7_ANGCS (Exonuclease domain-containing protein n=1 Tax=Angiostrongylus costaricensis TaxID=334426 RepID=A0A158PEJ7_ANGCS)

HSP 1 Score: 69.3 bits (168), Expect = 1.370e-10
Identity = 32/75 (42.67%), Postives = 51/75 (68.00%), Query Frame = 2
Query:  452 KSALLAGSTVHFDRHFLIKEFPCLRKFLSHKSIDVTSILEAFKRFGKGQLRQKPQPGGTHRAGDDIMDSINLMKF 676
            K+  LAG++VHFDR F++K  P L K L+++ +DV++I E   R+   +L++ P   GTHRA DDI +SI  +++
Sbjct:   97 KTCPLAGNSVHFDRRFIMKYMPLLEKQLNYRIVDVSTIEELAARWYPNELKRAPFKKGTHRALDDIRESIEELRY 171          
BLAST of mRNA_P-littoralis_Contig154.103.1 vs. uniprot
Match: Q22ZB0_TETTS (Oligoribonuclease n=1 Tax=Tetrahymena thermophila (strain SB210) TaxID=312017 RepID=Q22ZB0_TETTS)

HSP 1 Score: 68.2 bits (165), Expect = 1.500e-10
Identity = 32/75 (42.67%), Postives = 49/75 (65.33%), Query Frame = 2
Query:  452 KSALLAGSTVHFDRHFLIKEFPCLRKFLSHKSIDVTSILEAFKRFGKGQLRQKPQPGGTHRAGDDIMDSINLMKF 676
            K ALLAG+++H D  F+ K+ P L  FL ++ +DV+++ E  KR+    L++ P   G HRA DDI++SI  +KF
Sbjct:  108 KEALLAGNSIHADMKFIQKQMPNLYNFLHYRLVDVSTVKELTKRWNPEILKKAPVKKGGHRALDDILESIEELKF 182          
BLAST of mRNA_P-littoralis_Contig154.103.1 vs. uniprot
Match: A0A871R6H7_DEKBR (Exonuclease domain-containing protein n=5 Tax=Dekkera bruxellensis TaxID=5007 RepID=A0A871R6H7_DEKBR)

HSP 1 Score: 67.4 bits (163), Expect = 4.380e-10
Identity = 32/74 (43.24%), Postives = 48/74 (64.86%), Query Frame = 2
Query:  455 SALLAGSTVHFDRHFLIKEFPCLRKFLSHKSIDVTSILEAFKRFGKGQLRQKPQPGGTHRAGDDIMDSINLMKF 676
            + +LAG++VH DR FL++E P +  +L+++ IDV+S++E  KR      R  P   G H A  DI++SIN MKF
Sbjct:  111 TGILAGNSVHVDRLFLLRELPSVVDYLTYRIIDVSSVMEFAKRHNPTVERLMPPKIGAHTAKQDIIESINQMKF 184          
BLAST of mRNA_P-littoralis_Contig154.103.1 vs. uniprot
Match: A0A8B7Y3W3_ACAPL (oligoribonuclease, mitochondrial-like isoform X2 n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7Y3W3_ACAPL)

HSP 1 Score: 65.5 bits (158), Expect = 8.130e-10
Identity = 31/71 (43.66%), Postives = 44/71 (61.97%), Query Frame = 2
Query:  464 LAGSTVHFDRHFLIKEFPCLRKFLSHKSIDVTSILEAFKRFGKGQLRQKPQPGGTHRAGDDIMDSINLMKF 676
            LAG++VH D+ FL K  P     L ++ +DV+S+ E  +R+  GQ    PQ    HRA DDIM+SI+ +KF
Sbjct:   81 LAGNSVHEDKKFLAKYMPQFMNHLHYRIVDVSSVKELCRRWYPGQFENAPQKKAAHRALDDIMESIDELKF 151          
BLAST of mRNA_P-littoralis_Contig154.103.1 vs. uniprot
Match: A0A7D9CYC9_DEKBR (DEBR0S4_01112g1_1 n=1 Tax=Dekkera bruxellensis TaxID=5007 RepID=A0A7D9CYC9_DEKBR)

HSP 1 Score: 67.4 bits (163), Expect = 9.930e-10
Identity = 32/74 (43.24%), Postives = 48/74 (64.86%), Query Frame = 2
Query:  455 SALLAGSTVHFDRHFLIKEFPCLRKFLSHKSIDVTSILEAFKRFGKGQLRQKPQPGGTHRAGDDIMDSINLMKF 676
            + +LAG++VH DR FL++E P +  +L+++ IDV+S++E  KR      R  P   G H A  DI++SIN MKF
Sbjct:  183 TGILAGNSVHVDRLFLLRELPSVVDYLTYRIIDVSSVMEFAKRHNPTVERLMPPKIGAHTAKQDIIESINQMKF 256          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig154.103.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
B5LWG6_9PHYC1.200e-6452.69Putative oligoribonuclease n=1 Tax=Feldmannia spec... [more]
Q6XM84_9PHYC4.050e-5246.43FirrV-1-A3 n=1 Tax=Feldmannia irregularis virus a ... [more]
D8LPG5_ECTSI5.720e-4541.58EsV-1-139 n=2 Tax=root TaxID=1 RepID=D8LPG5_ECTSI[more]
A0A836CDV0_9STRA4.480e-2534.58Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A835YX31_9STRA6.710e-2033.65Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A158PEJ7_ANGCS1.370e-1042.67Exonuclease domain-containing protein n=1 Tax=Angi... [more]
Q22ZB0_TETTS1.500e-1042.67Oligoribonuclease n=1 Tax=Tetrahymena thermophila ... [more]
A0A871R6H7_DEKBR4.380e-1043.24Exonuclease domain-containing protein n=5 Tax=Dekk... [more]
A0A8B7Y3W3_ACAPL8.130e-1043.66oligoribonuclease, mitochondrial-like isoform X2 n... [more]
A0A7D9CYC9_DEKBR9.930e-1043.24DEBR0S4_01112g1_1 n=1 Tax=Dekkera bruxellensis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig154contigP-littoralis_Contig154:379673..380348 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LPG5
Preferred nameREXO2
PFAMsRNase_T
Model size676
Max annot lvl2759|Eukaryota
KEGG rclassRC00408
KEGG koko:K01179,ko:K01835,ko:K13288
KEGG ReactionR00959,R01057,R06200,R08639,R11307,R11308
KEGG Pathwayko00010,ko00030,ko00052,ko00230,ko00500,ko00520,ko00521,ko01100,ko01110,ko01120,ko01130,ko03008,map00010,map00030,map00052,map00230,map00500,map00520,map00521,map01100,map01110,map01120,map01130,map03008
KEGG ModuleM00549
Hectar predicted targeting categoryother localisation
GOsGO:0000002,GO:0000175,GO:0000459,GO:0000460,GO:0000466,GO:0000467,GO:0000469,GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005740,GO:0005758,GO:0005759,GO:0005912,GO:0005924,GO:0005925,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007005,GO:0008150,GO:0008152,GO:0008408,GO:0008946,GO:0009117,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016072,GO:0016073,GO:0016180,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0019637,GO:0022613,GO:0030054,GO:0030055,GO:0031123,GO:0031125,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0031981,GO:0034470,GO:0034472,GO:0034475,GO:0034476,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043628,GO:0044085,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0055086,GO:0070013,GO:0070161,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0140098,GO:1901360
Exons1
Evalue0.000814
EggNOG OGsCOG1949@1|root,KOG3242@2759|Eukaryota
EC3.2.1.4,5.4.2.2
DescriptionRNA phosphodiester bond hydrolysis, exonucleolytic
Cds size483
COG categoryA
CAZyGH5,GH9
BRITEko00000,ko00001,ko00002,ko01000,ko03009,ko03019
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789735.6334398-UTR-P-littoralis_Contig154:379672..3798591680789735.6334398-UTR-P-littoralis_Contig154:379672..379859Pylaiella littoralis U1_48UTRP-littoralis_Contig154 379673..379859 -
1680789735.6711967-UTR-P-littoralis_Contig154:380342..3803481680789735.6711967-UTR-P-littoralis_Contig154:380342..380348Pylaiella littoralis U1_48UTRP-littoralis_Contig154 380343..380348 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789735.6502748-CDS-P-littoralis_Contig154:379859..3803421680789735.6502748-CDS-P-littoralis_Contig154:379859..380342Pylaiella littoralis U1_48CDSP-littoralis_Contig154 379860..380342 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig154.103.1prot_P-littoralis_Contig154.103.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig154 379860..380342 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig154.103.1

>prot_P-littoralis_Contig154.103.1 ID=prot_P-littoralis_Contig154.103.1|Name=mRNA_P-littoralis_Contig154.103.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=161bp
MSSDYERMSPWFWLDLETSGLDPQNDFILEKYVSVTDNAERVGHSARFPA
PPLQRATRQGFDVVQGALLLQEPPRKRAFRRVQLFQREPRERGEVAVEFF
RVLLCARDRQRAAGASRYEFHEHHSRFAWQHPSPARRCRHQILHHRATQV
GSLGRIHGAL*
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mRNA from alignment at P-littoralis_Contig154:379673..380348-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig154.103.1 ID=mRNA_P-littoralis_Contig154.103.1|Name=mRNA_P-littoralis_Contig154.103.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=676bp|location=Sequence derived from alignment at P-littoralis_Contig154:379673..380348- (Pylaiella littoralis U1_48)
AAAGCCATGTCTTCTGACTACGAAAGGATGAGCCCTTGGTTCTGGCTTGA CCTCGAGACCTCCGGACTTGACCCACAAAACGACTTCATTCTCGAGAAAT ACGTATCGGTTACAGACAACGCTGAACGTGTGGGACACTCTGCACGTTTT CCTGCACCACCCTTACAACGTGCTACTCGCCAAGGCTTCGACGTGGTGCA AGGGGCACTTTTGCTCCAGGAGCCACCGAGGAAACGGGCTTTTCGACGAG TGCAACTTTTCCAACGTGAGCCACGGGAACGCGGAGAGGTTGCTGTGGAA TTTTTCCGAGTACTACTCTGCGCACGAGATAGGCAACGGGCGGCCGGAGC GAGTCGCTACGAATTTCATGAACACCACAGCAGATTCGCATGGCAGCATC CTTCACCCGCACGACGTTGCCGCCACCAGATACTCCACCACCGCGCCACA CAAGTCGGCTCTCTTGGCCGGATCCACGGTGCACTTTGACCGCCACTTTC TCATCAAAGAGTTCCCGTGCTTGCGTAAGTTTCTGAGCCACAAGTCCATA GACGTGACATCTATACTCGAGGCATTCAAACGCTTCGGAAAGGGCCAGCT CAGACAGAAGCCGCAGCCGGGCGGGACGCACAGGGCCGGGGACGATATAA TGGATTCCATCAACCTGATGAAATTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig154:379673..380348-

>mRNA_P-littoralis_Contig154.103.1 ID=mRNA_P-littoralis_Contig154.103.1|Name=mRNA_P-littoralis_Contig154.103.1|organism=Pylaiella littoralis U1_48|type=CDS|length=483bp|location=Sequence derived from alignment at P-littoralis_Contig154:379673..380348- (Pylaiella littoralis U1_48)
ATGTCTTCTGACTACGAAAGGATGAGCCCTTGGTTCTGGCTTGACCTCGA
GACCTCCGGACTTGACCCACAAAACGACTTCATTCTCGAGAAATACGTAT
CGGTTACAGACAACGCTGAACGTGTGGGACACTCTGCACGTTTTCCTGCA
CCACCCTTACAACGTGCTACTCGCCAAGGCTTCGACGTGGTGCAAGGGGC
ACTTTTGCTCCAGGAGCCACCGAGGAAACGGGCTTTTCGACGAGTGCAAC
TTTTCCAACGTGAGCCACGGGAACGCGGAGAGGTTGCTGTGGAATTTTTC
CGAGTACTACTCTGCGCACGAGATAGGCAACGGGCGGCCGGAGCGAGTCG
CTACGAATTTCATGAACACCACAGCAGATTCGCATGGCAGCATCCTTCAC
CCGCACGACGTTGCCGCCACCAGATACTCCACCACCGCGCCACACAAGTC
GGCTCTCTTGGCCGGATCCACGGTGCACTTTGA
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