mRNA_P-littoralis_Contig154.13.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig154.13.1
Unique NamemRNA_P-littoralis_Contig154.13.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig154.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig154contigP-littoralis_Contig154:66171..67104 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size934
Hectar predicted targeting categoryother localisation
Exons1
Cds size756
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789735.4476502-UTR-P-littoralis_Contig154:66170..663481680789735.4476502-UTR-P-littoralis_Contig154:66170..66348Pylaiella littoralis U1_48UTRP-littoralis_Contig154 66171..66348 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789735.4596636-CDS-P-littoralis_Contig154:66348..671041680789735.4596636-CDS-P-littoralis_Contig154:66348..67104Pylaiella littoralis U1_48CDSP-littoralis_Contig154 66349..67104 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig154.13.1prot_P-littoralis_Contig154.13.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig154 66349..67104 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig154.13.1

>prot_P-littoralis_Contig154.13.1 ID=prot_P-littoralis_Contig154.13.1|Name=mRNA_P-littoralis_Contig154.13.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=252bp
MASPAGTPTQQAVEPVVSSTTCCKCPVCTCGPGCTCPGGEGPGCDPCATF
MKDAASSVAVAATAPPAGAAAEAAEDVSPPKQVPVVGGNTTCCKCPVCTC
GPECTCPKGEGPGCDPCAVFTKDAAAAAAAAEDSSPTKQVPVVGGNTTCC
KCSVRTCGPDCACPKGEGPECDPCAVFTKDAAATAAAAAETAEPADGAGS
GDDSTRARGLPLQHEAKESALDNVTGARAVGGSSSPTSCRPGNGALNNNN
SN
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mRNA from alignment at P-littoralis_Contig154:66171..67104+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig154.13.1 ID=mRNA_P-littoralis_Contig154.13.1|Name=mRNA_P-littoralis_Contig154.13.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=934bp|location=Sequence derived from alignment at P-littoralis_Contig154:66171..67104+ (Pylaiella littoralis U1_48)
GCCGGCCCAGACAGGCAGAGGCAGAGGAGAGAGACACCAGAGTGACTACT
GCTGTAGCCGACTCGCGCCGACCAACCGTTAAAGGATCTCGCACATCGTA
CCCCTCTAGCAGTTAACGTCCACGTGAAACCAGGACAAAAACCTGCTAGC
GCAACGGAGCCAGTATACCCACGACCATATGGCGTCGCCTGCCGGCACTC
CGACGCAGCAGGCAGTAGAGCCAGTTGTAAGCAGCACGACTTGTTGCAAG
TGCCCGGTTTGCACGTGCGGGCCGGGCTGCACATGCCCTGGAGGCGAAGG
GCCTGGGTGTGATCCATGCGCCACTTTCATGAAAGACGCAGCGTCATCAG
TGGCGGTAGCAGCAACAGCACCTCCAGCAGGGGCGGCGGCAGAAGCAGCA
GAGGATGTCTCTCCGCCAAAGCAAGTGCCGGTTGTGGGAGGCAACACGAC
TTGCTGCAAGTGCCCGGTTTGTACGTGCGGGCCGGAATGCACATGTCCCA
AAGGAGAAGGGCCTGGGTGTGATCCATGCGCCGTGTTTACGAAAGATGCA
GCGGCGGCAGCAGCAGCAGCAGAGGATTCCTCTCCGACAAAGCAAGTGCC
GGTTGTGGGAGGCAACACGACTTGCTGCAAGTGCTCGGTTCGTACGTGCG
GGCCGGACTGCGCATGTCCCAAAGGAGAAGGGCCTGAGTGTGACCCATGC
GCCGTGTTTACGAAAGACGCGGCGGCAACAGCAGCAGCAGCAGCAGAGAC
AGCGGAGCCAGCAGATGGAGCCGGCAGCGGTGACGACAGCACTAGAGCTC
GGGGCCTCCCACTCCAACATGAAGCGAAAGAAAGTGCCCTGGATAACGTA
ACAGGAGCACGGGCAGTCGGGGGCTCCTCCTCTCCAACCTCATGCCGTCC
AGGCAACGGGGCCTTGAACAACAACAACAGCAAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig154:66171..67104+

>mRNA_P-littoralis_Contig154.13.1 ID=mRNA_P-littoralis_Contig154.13.1|Name=mRNA_P-littoralis_Contig154.13.1|organism=Pylaiella littoralis U1_48|type=CDS|length=756bp|location=Sequence derived from alignment at P-littoralis_Contig154:66171..67104+ (Pylaiella littoralis U1_48)
ATGGCGTCGCCTGCCGGCACTCCGACGCAGCAGGCAGTAGAGCCAGTTGT
AAGCAGCACGACTTGTTGCAAGTGCCCGGTTTGCACGTGCGGGCCGGGCT
GCACATGCCCTGGAGGCGAAGGGCCTGGGTGTGATCCATGCGCCACTTTC
ATGAAAGACGCAGCGTCATCAGTGGCGGTAGCAGCAACAGCACCTCCAGC
AGGGGCGGCGGCAGAAGCAGCAGAGGATGTCTCTCCGCCAAAGCAAGTGC
CGGTTGTGGGAGGCAACACGACTTGCTGCAAGTGCCCGGTTTGTACGTGC
GGGCCGGAATGCACATGTCCCAAAGGAGAAGGGCCTGGGTGTGATCCATG
CGCCGTGTTTACGAAAGATGCAGCGGCGGCAGCAGCAGCAGCAGAGGATT
CCTCTCCGACAAAGCAAGTGCCGGTTGTGGGAGGCAACACGACTTGCTGC
AAGTGCTCGGTTCGTACGTGCGGGCCGGACTGCGCATGTCCCAAAGGAGA
AGGGCCTGAGTGTGACCCATGCGCCGTGTTTACGAAAGACGCGGCGGCAA
CAGCAGCAGCAGCAGCAGAGACAGCGGAGCCAGCAGATGGAGCCGGCAGC
GGTGACGACAGCACTAGAGCTCGGGGCCTCCCACTCCAACATGAAGCGAA
AGAAAGTGCCCTGGATAACGTAACAGGAGCACGGGCAGTCGGGGGCTCCT
CCTCTCCAACCTCATGCCGTCCAGGCAACGGGGCCTTGAACAACAACAAC
AGCAAC
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