mRNA_P-littoralis_Contig154.97.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig154.97.1
Unique NamemRNA_P-littoralis_Contig154.97.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig154.97.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig154contigP-littoralis_Contig154:348753..349861 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size550
Hectar predicted targeting categoryother localisation
Exons2
Cds size471
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789735.31787-UTR-P-littoralis_Contig154:348752..3487891680789735.31787-UTR-P-littoralis_Contig154:348752..348789Pylaiella littoralis U1_48UTRP-littoralis_Contig154 348753..348789 +
1680789735.3487618-UTR-P-littoralis_Contig154:349819..3498611680789735.3487618-UTR-P-littoralis_Contig154:349819..349861Pylaiella littoralis U1_48UTRP-littoralis_Contig154 349820..349861 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789735.3297818-CDS-P-littoralis_Contig154:348789..3489691680789735.3297818-CDS-P-littoralis_Contig154:348789..348969Pylaiella littoralis U1_48CDSP-littoralis_Contig154 348790..348969 +
1680789735.3381689-CDS-P-littoralis_Contig154:349528..3498191680789735.3381689-CDS-P-littoralis_Contig154:349528..349819Pylaiella littoralis U1_48CDSP-littoralis_Contig154 349529..349819 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig154.97.1prot_P-littoralis_Contig154.97.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig154 348790..349819 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig154.97.1

>prot_P-littoralis_Contig154.97.1 ID=prot_P-littoralis_Contig154.97.1|Name=mRNA_P-littoralis_Contig154.97.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=157bp
MEDGEVVSRYGKWEHRRSECNRCGRWGHDRGKCVETHNVNSAPLRNTMCL
NCGTYGHHRKVCWIKNVQRPWCEKCAAFGHVKGRCRATILSGLLGARVAA
CSATHATSAEMPPPKTSGFTDRSKAAAVCTPPWAYRIAWPWCSTTVARAP
SSGADA*
back to top

mRNA from alignment at P-littoralis_Contig154:348753..349861+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig154.97.1 ID=mRNA_P-littoralis_Contig154.97.1|Name=mRNA_P-littoralis_Contig154.97.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1109bp|location=Sequence derived from alignment at P-littoralis_Contig154:348753..349861+ (Pylaiella littoralis U1_48)
GCTCGCACATCAGTCACAAGCCGTACCAACGGGCAGCATGGAGGACGGGG
AGGTGGTGTCTCGCTATGGCAAATGGGAACATAGACGATCTGAATGCAAC
CGCTGTGGCAGGTGGGGTCACGACCGCGGCAAGTGCGTCGAGACACACAA
CGTCAACAGTGCCCCCCTGCGCAATACGATGTGCTTGAACTGCGGAACTT
ACGGTCATCATCGCAAGGTGTGTGCAACATAGAGTTGAGTGCGCTCCCTT
GATGTGGCCCACAGAGCAAACTAGGAAAAACTCAAGCCATGAAGCATCCA
TCCGAAGGCCAAAACAAATAGATAGAAACAAACAAAAGTTGCCTGCTCAC
AGGGACCGGCTTTCAACCTCGGCTTACCCCACTGTTTTGTCAAATATTTG
CTCCACATATCCCAAATTGATGGCGGTAGGTGTAGAAACAACCAAAAGTT
GTCACCTCATAGGGATCGGCTTTTAGGGTTTATGCAACCTCGGTTTACCT
CACTGTTCTGTCGAGCATTTGCTCCACATACCCAAAATGACGAGAGCACC
TCATCTATTCTTCATGCACGTCGACTGTCTCAGACTCTTTGTATTGCTTA
CGTTTGTACTTGTACTGATTCCCCTGCCTCTCCTTGTATTTTAACGTGGT
AGTTGCCATGGCGGAGAAGGTTTTGTGACCAGTGTGTACGACAAAGGGGA
CGAAAAACATCAGCATCTTGACTTGCTCTCTCGAATATCCCGTTTGTTCT
GGAAAACCTTAAATTGATAACAATAGGTGTGCTGGATAAAAAACGTTCAA
CGGCCTTGGTGTGAGAAGTGCGCTGCGTTTGGTCATGTGAAGGGAAGGTG
TCGCGCGACGATCTTGTCAGGCCTGTTAGGTGCACGCGTTGCAGCCTGCT
CGGCCACACACGCAACGAGTGCCGAGATGCCCCCTCCAAAAACGTCGGGC
TTCACCGATCGTTCGAAAGCAGCAGCAGTTTGTACCCCACCGTGGGCTTA
CAGGATTGCATGGCCGTGGTGTTCGACGACGGTAGCAAGGGCGCCTTCTT
CGGGGGCAGATGCCTAGGTGTGGCGCTCGTTGATAATTGTTCTGACGGCA
TTCCTTTCG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig154:348753..349861+

>mRNA_P-littoralis_Contig154.97.1 ID=mRNA_P-littoralis_Contig154.97.1|Name=mRNA_P-littoralis_Contig154.97.1|organism=Pylaiella littoralis U1_48|type=CDS|length=471bp|location=Sequence derived from alignment at P-littoralis_Contig154:348753..349861+ (Pylaiella littoralis U1_48)
ATGGAGGACGGGGAGGTGGTGTCTCGCTATGGCAAATGGGAACATAGACG
ATCTGAATGCAACCGCTGTGGCAGGTGGGGTCACGACCGCGGCAAGTGCG
TCGAGACACACAACGTCAACAGTGCCCCCCTGCGCAATACGATGTGCTTG
AACTGCGGAACTTACGGTCATCATCGCAAGGTGTGCTGGATAAAAAACGT
TCAACGGCCTTGGTGTGAGAAGTGCGCTGCGTTTGGTCATGTGAAGGGAA
GGTGTCGCGCGACGATCTTGTCAGGCCTGTTAGGTGCACGCGTTGCAGCC
TGCTCGGCCACACACGCAACGAGTGCCGAGATGCCCCCTCCAAAAACGTC
GGGCTTCACCGATCGTTCGAAAGCAGCAGCAGTTTGTACCCCACCGTGGG
CTTACAGGATTGCATGGCCGTGGTGTTCGACGACGGTAGCAAGGGCGCCT
TCTTCGGGGGCAGATGCCTAG
back to top