mRNA_P-littoralis_Contig154.55.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig154.55.1
Unique NamemRNA_P-littoralis_Contig154.55.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig154.55.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig154contigP-littoralis_Contig154:161816..164163 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size271
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size147
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789735.2608428-UTR-P-littoralis_Contig154:161815..1619391680789735.2608428-UTR-P-littoralis_Contig154:161815..161939Pylaiella littoralis U1_48UTRP-littoralis_Contig154 161816..161939 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789735.2715466-CDS-P-littoralis_Contig154:161939..1620101680789735.2715466-CDS-P-littoralis_Contig154:161939..162010Pylaiella littoralis U1_48CDSP-littoralis_Contig154 161940..162010 +
1680789735.2826333-CDS-P-littoralis_Contig154:164087..1641631680789735.2826333-CDS-P-littoralis_Contig154:164087..164163Pylaiella littoralis U1_48CDSP-littoralis_Contig154 164088..164163 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig154.55.1prot_P-littoralis_Contig154.55.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig154 161940..164163 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig154.55.1

>prot_P-littoralis_Contig154.55.1 ID=prot_P-littoralis_Contig154.55.1|Name=mRNA_P-littoralis_Contig154.55.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=49bp
MRSKMESSAHYCTVLNSSTEQWYRSSQPAVCGGVQGRRSLTVMSRFTSE
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mRNA from alignment at P-littoralis_Contig154:161816..164163+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig154.55.1 ID=mRNA_P-littoralis_Contig154.55.1|Name=mRNA_P-littoralis_Contig154.55.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2348bp|location=Sequence derived from alignment at P-littoralis_Contig154:161816..164163+ (Pylaiella littoralis U1_48)
TTTTCAGACCCCTGGGGGGTCAAAGGGTTAACCGGTGGTCAATGCAACCA
TCACAAATTACAACTGGAAAAAGAGGCAACACAGGAGGAAAGCTCGACAG
ATCAGCTCTGCATTTTGGCTCAAAATGCGGTCTAAAATGGAATCATCCGC
ACACTACTGTACAGTACTGAACAGCAGTACTGAGCAGTGGTACAGGTGTG
CATTTTTGTACAGCAGTGCGATCTTTTGTGTGGATTATTATTCAAGTTTA
GACCGCATTTTGAGCCAAAATGAGGAGCTCATCGGCCGAGTGCAGTAGTA
CCTGGTAGTATTTTTCCTGTGTTGCTTATATGAGCAGATACACACCTTTC
GATGAGGGAGATGCCCTACTGTAGCTTTGCCGGGCGGCGACCGAACCATG
CCTGATGGGGTTCGTGCCCTCATGATACCACCTTGACCGGGCCAGCTCTC
GTGCTCCTCGTCCTGCTCGTCGCCGGCGCCTCTTTTGGTCTCTCCTGTCG
AGGATACATATGTGAGGCAGGAATAATTGTTTTTTTCCGTGAGTTTTCCC
CGAAAGGAAGCAAAAAAGAAAAAGGAAAGGAGGGCTGGAAAACCCCAGGA
CTTCCAGGACTTCCGGTAACAATTGGGACAGGAGAGAGGGCGATATGGTA
CGGGAAAGATGCCATGGGATATTTGATACTCCGGAGTATTTCGATATTTC
ATTCCCGACCGACGTTTCCCGAGCTCCATCCGTCGGGGGTTTCTGTTCCC
GCGTTTCCCGTCCCGCCGCAAGATGAACGCTTCCCATCCCGCTCCCGACT
TTGACACTCTTCCTCTCGTCTGACCACCCCACAGCAACCAACTTCCCGGG
ATATTCCAGGATAACTCTAGGAAGGTCAATGCCCCGACCCCCGCTATAGC
AGAACAAGTGAAACTAGCGGGGGGATAGGGGTGTATCAGCTGGTATTGAA
TTATTCTGGAACTATTTATTTATACCTGATTTAATACCGCAAAGTTTTGA
AACTGCTGCATGATGTATGTGCTGCTGAAGCTGCAATAGCACACACGTGA
TGTCCGCCTCCCAAACCGGCACGTCTGTCGCTGCAGCAGTTGGGCAACCA
CCTACAGTACCCCCAACGCCTTCATCGAACGACGCCCCCGGCCCTAGCAC
GGAAGGAACACAGCAGCAGCCTGCTCCAGCATCTACTGCTGTTCCTCCGG
TCGGAACCCCAGCACCGACAGCAGTCGCGGTCGGGCCTGGTAGTGGCAAG
CGCAGACTGACGTCTGATGTTTGGCGTTGCAGCTGGCCGCACATAAGTTT
TTCCTGTTTGGTTGTTCTTCGTGCCTTAGTTGTTGGGACAAAGTAAAGAA
ACCATGGAATAGAAAAAGAAATGCAAACGGGTTCAACTAGTGTCGTTGTT
TTCTGGTTGTTTTGGGGTCAAGTTCGAATGACAACGCAGCATGCTGTGAG
AGAGAGAGAGAGTGCGAGCGATGAATAATACTTCATATATACGGAGTCTC
AATAAATAATAAATACATGATCGTATGATACACAGGTAGGTGTATATATA
TGCAAGCTGCACAACGAGTGGAACGTGGCTTCCCCATCATTCCTCCATCA
CCCATCGTGATGGCGCCAGCCTTACCATACCACCAATAGCGATACACAAA
TACCATCCCATACCATCAACACGAAATCCTAATACCATACCATACCATCA
ACACGAAATCCTAATACCATACCATACCATCAACACGAAATCCCAAAACG
ATACCATACCATCAACAAGAAATTATGATACCATCCCATATCATCACAAT
TTTTGTGTCATCTTTACCATCCCATACCATTACCATCAACAAGCGGTAGA
ACACCATACCATCATCGGTGATGGTAAGCCCAAAAAAATTTCCGCCTGCG
GCGGGCTTTTTACCATTACCATACCGGTAACATCGTGGTGCCTTCGGCAC
CACCCATAGCCCTGAGAATTACGTAGCCATATTGTTCCTACACGTACATG
AAAGAAACATCTTTGCTGAATCAGTTCAGCTTGGTCCCTGCTTCGTCCCC
TGTCGCCCATACTGCTGTGTGTGTGCCGAGGTTGGTTGCCAGCTTGGTGT
ATGATAGCAGAAGCGCATGTTCAGGGGTTTCCACATAGCCCCGGTTTTCC
GTTAGAAGCGTTCATGTATCAAAATGTTTTTTATTATTCGGCGTTCGGCT
GCAGCACTGGGTTTCGCGTTTCGCTGTTTCCGCTCTCGGTTATGTTTTGG
TGCCTGTTCTCTTCTCAGAAAGGTCCTCTCAGCCTGCAGTGTGTGGGGGC
GTGCAAGGGAGGCGATCCCTGACCGTCATGAGTCGGTTCACGAGTGAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig154:161816..164163+

>mRNA_P-littoralis_Contig154.55.1 ID=mRNA_P-littoralis_Contig154.55.1|Name=mRNA_P-littoralis_Contig154.55.1|organism=Pylaiella littoralis U1_48|type=CDS|length=147bp|location=Sequence derived from alignment at P-littoralis_Contig154:161816..164163+ (Pylaiella littoralis U1_48)
ATGCGGTCTAAAATGGAATCATCCGCACACTACTGTACAGTACTGAACAG
CAGTACTGAGCAGTGGTACAGGTCCTCTCAGCCTGCAGTGTGTGGGGGCG
TGCAAGGGAGGCGATCCCTGACCGTCATGAGTCGGTTCACGAGTGAG
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