mRNA_P-littoralis_Contig154.50.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig154.50.1
Unique NamemRNA_P-littoralis_Contig154.50.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig154.50.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig154contigP-littoralis_Contig154:154191..154380 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size181
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size165
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789735.2123227-UTR-P-littoralis_Contig154:154190..1542061680789735.2123227-UTR-P-littoralis_Contig154:154190..154206Pylaiella littoralis U1_48UTRP-littoralis_Contig154 154191..154206 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789735.2214222-CDS-P-littoralis_Contig154:154206..1542671680789735.2214222-CDS-P-littoralis_Contig154:154206..154267Pylaiella littoralis U1_48CDSP-littoralis_Contig154 154207..154267 +
1680789735.2297604-CDS-P-littoralis_Contig154:154276..1543801680789735.2297604-CDS-P-littoralis_Contig154:154276..154380Pylaiella littoralis U1_48CDSP-littoralis_Contig154 154277..154380 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig154.50.1prot_P-littoralis_Contig154.50.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig154 154207..154380 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig154.50.1

>prot_P-littoralis_Contig154.50.1 ID=prot_P-littoralis_Contig154.50.1|Name=mRNA_P-littoralis_Contig154.50.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=55bp
MHRIFLTMIYSPRGTKLTTPMTVCRAAQPPTPAGNLTMHACSVCECNANK
LSFL*
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mRNA from alignment at P-littoralis_Contig154:154191..154380+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig154.50.1 ID=mRNA_P-littoralis_Contig154.50.1|Name=mRNA_P-littoralis_Contig154.50.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=190bp|location=Sequence derived from alignment at P-littoralis_Contig154:154191..154380+ (Pylaiella littoralis U1_48)
CTTTCCTACCCCATCCATGCACAGGATTTTTCTCACTATGATATATTCCC
CCCGCGGAACAAAGCTGACGACACCAAGTGACGGAGTGACGGTGTGCCGT
GCGGCACAACCCCCAACCCCGGCTGGAAACCTGACTATGCATGCATGTAG
TGTATGTGAGTGCAACGCAAATAAACTCTCCTTCTTGTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig154:154191..154380+

>mRNA_P-littoralis_Contig154.50.1 ID=mRNA_P-littoralis_Contig154.50.1|Name=mRNA_P-littoralis_Contig154.50.1|organism=Pylaiella littoralis U1_48|type=CDS|length=165bp|location=Sequence derived from alignment at P-littoralis_Contig154:154191..154380+ (Pylaiella littoralis U1_48)
ATGCACAGGATTTTTCTCACTATGATATATTCCCCCCGCGGAACAAAGCT
GACGACACCAATGACGGTGTGCCGTGCGGCACAACCCCCAACCCCGGCTG
GAAACCTGACTATGCATGCATGTAGTGTATGTGAGTGCAACGCAAATAAA
CTCTCCTTCTTGTGA
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