mRNA_P-littoralis_Contig1535.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1535.1.1
Unique NamemRNA_P-littoralis_Contig1535.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1535.1.1 vs. uniprot
Match: A0A6H5KRI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRI1_9PHAE)

HSP 1 Score: 302 bits (773), Expect = 4.860e-100
Identity = 167/218 (76.61%), Postives = 170/218 (77.98%), Query Frame = 2 
Query:    5 MDMDTATVSTPARQSLGTRPAVTPTQSAKKDEDERRKRRTSGPRAVGTDAQQATPDSTKGNGPNYPRGFQPGREGSDGAKLPVSMFLQQGVLEEGVQEHSTAGVHARVARWWSSNADSNEDRAFTGNRTSTGKTLAAVVK--------DEDLACYYGLKKSFSGRSTTWVLSRSSLARERADAQWSFCLPAGWAEEYGADGSWKFKTSKGGTPVSEIL 634
            MDMDTATVSTPARQSLGTRPAVTPTQSAKKDEDERRKRRTSGPRAVGTDAQQAT DSTKGNGPNYP GF+PGREGSDGAKLPV MFLQQG LEEGVQEH+TA VHA VARWWSS ADSNEDRAFTGNRTSTGK LA+VVK        DEDLA YYGLKKSFSG                            WAEEY ADGSWKFKTSKGGTPVS  L
Sbjct:   22 MDMDTATVSTPARQSLGTRPAVTPTQSAKKDEDERRKRRTSGPRAVGTDAQQATHDSTKGNGPNYPCGFKPGREGSDGAKLPVYMFLQQGALEEGVQEHTTAEVHAHVARWWSSYADSNEDRAFTGNRTSTGKILASVVKADLYIPRQDEDLAFYYGLKKSFSG----------------------------WAEEYSADGSWKFKTSKGGTPVSVSL 211
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BLAST of mRNA_P-littoralis_Contig1535.1.1 vs. uniprot
Match: A0A6H5K1G6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1G6_9PHAE)

HSP 1 Score: 183 bits (464), Expect = 1.380e-54
Identity = 96/101 (95.05%), Postives = 98/101 (97.03%), Query Frame = 2 
Query:    5 MDMDTATVSTPARQSLGTRPAVTPTQSAKKDEDERRKRRTSGPRAVGTDAQQATPDSTKGNGPNYPRGFQPGREGSDGAKLPVSMFLQQGVLEEGVQEHST 307
            MDMDTATVSTPARQSLGTRPAVTPTQSAKKDEDERRKRRTSGPRAVGTDAQQAT DSTKGNGPNYPRGF+PGREGSDGAKLPV MFLQQG LEEGVQEH+T
Sbjct:   22 MDMDTATVSTPARQSLGTRPAVTPTQSAKKDEDERRKRRTSGPRAVGTDAQQATHDSTKGNGPNYPRGFKPGREGSDGAKLPVYMFLQQGALEEGVQEHTT 122
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BLAST of mRNA_P-littoralis_Contig1535.1.1 vs. uniprot
Match: A0A6H5KFP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFP1_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 4.980e-29
Identity = 63/93 (67.74%), Postives = 76/93 (81.72%), Query Frame = 2 
Query:  626 EILEMRFAHIRAGMGCHKAPTASQAAQAGMHGDTCRLSYGERRRNSSRSGGQPFDIQQGATLRVALPVNAEERGEVVRAATWRNADHVFETRS 904
            +ILE RFAHIR GMG HKAPTA+QAA+   HGDTCR+S+G +RRN+SRS G  F++Q  A++RVALPVNA ER EVVRAATW   DHVFE+R+
Sbjct:  800 DILEHRFAHIRTGMGTHKAPTATQAARQAKHGDTCRVSHGLQRRNASRSTGS-FEVQSSASIRVALPVNASEREEVVRAATWDRDDHVFESRA 891
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BLAST of mRNA_P-littoralis_Contig1535.1.1 vs. uniprot
Match: A0A6H5K7Z3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z3_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 1.780e-21
Identity = 53/93 (56.99%), Postives = 64/93 (68.82%), Query Frame = 2 
Query:  626 EILEMRFAHIRAGMGCHKAPTASQAAQAGMHGDTCRLSYGERRRNSSRSGGQPFDIQQGATLRVALPVNAEERGEVVRAATWRNADHVFETRS 904
            +ILE RFAHIR+G G HK PTA QA +A   GDT R+ +G RRRNSSRS G  F ++    +R A P NA ER +VVRA T  +A HVFE+RS
Sbjct:  576 DILEHRFAHIRSGRGTHKNPTAMQAIEAARAGDTARMFHGTRRRNSSRSAGMAFQLEDSQGVRAAFPANASERAQVVRAETRDDAHHVFESRS 668
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BLAST of mRNA_P-littoralis_Contig1535.1.1 vs. uniprot
Match: A0A6H5K994_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K994_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 2.290e-14
Identity = 44/74 (59.46%), Postives = 52/74 (70.27%), Query Frame = 2 
Query:  422 KDEDLACYYGLKKSFSGRSTTWVLSRSSLARERADAQWSFC--LPAGWAEEYGADGSWKFKTSKGGTPVSEILE 637
            +DEDLA YYGL+K  S + T WVLSRSSL  ERA+A  SF   LPAGW EE+G D SW FK +  GTPV+  +E
Sbjct:   63 RDEDLAQYYGLRK-VSSKPTKWVLSRSSLGEERAEAHISFGFGLPAGWCEEFGPDHSWTFKKTHDGTPVAISVE 135
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1535.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KRI1_9PHAE4.860e-10076.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1G6_9PHAE1.380e-5495.05Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KFP1_9PHAE4.980e-2967.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7Z3_9PHAE1.780e-2156.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K994_9PHAE2.290e-1459.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1535contigP-littoralis_Contig1535:1515..3654 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size967
Hectar predicted targeting categoryother localisation
Exons4
Cds size906
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1535.1.1prot_P-littoralis_Contig1535.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1535 1519..3597 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789734.7998142-UTR-P-littoralis_Contig1535:1514..15181680789734.7998142-UTR-P-littoralis_Contig1535:1514..1518Pylaiella littoralis U1_48UTRP-littoralis_Contig1535 1515..1518 +
1680789734.860225-UTR-P-littoralis_Contig1535:3597..36541680789734.860225-UTR-P-littoralis_Contig1535:3597..3654Pylaiella littoralis U1_48UTRP-littoralis_Contig1535 3598..3654 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789734.811522-CDS-P-littoralis_Contig1535:1518..16951680789734.811522-CDS-P-littoralis_Contig1535:1518..1695Pylaiella littoralis U1_48CDSP-littoralis_Contig1535 1519..1695 +
1680789734.8219392-CDS-P-littoralis_Contig1535:1890..21331680789734.8219392-CDS-P-littoralis_Contig1535:1890..2133Pylaiella littoralis U1_48CDSP-littoralis_Contig1535 1891..2133 +
1680789734.8333886-CDS-P-littoralis_Contig1535:2292..24931680789734.8333886-CDS-P-littoralis_Contig1535:2292..2493Pylaiella littoralis U1_48CDSP-littoralis_Contig1535 2293..2493 +
1680789734.8505635-CDS-P-littoralis_Contig1535:3312..35971680789734.8505635-CDS-P-littoralis_Contig1535:3312..3597Pylaiella littoralis U1_48CDSP-littoralis_Contig1535 3313..3597 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1535.1.1

>prot_P-littoralis_Contig1535.1.1 ID=prot_P-littoralis_Contig1535.1.1|Name=mRNA_P-littoralis_Contig1535.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=302bp
MDMDTATVSTPARQSLGTRPAVTPTQSAKKDEDERRKRRTSGPRAVGTDA
QQATPDSTKGNGPNYPRGFQPGREGSDGAKLPVSMFLQQGVLEEGVQEHS
TAGVHARVARWWSSNADSNEDRAFTGNRTSTGKTLAAVVKDEDLACYYGL
KKSFSGRSTTWVLSRSSLARERADAQWSFCLPAGWAEEYGADGSWKFKTS
KGGTPVSEILEMRFAHIRAGMGCHKAPTASQAAQAGMHGDTCRLSYGERR
RNSSRSGGQPFDIQQGATLRVALPVNAEERGEVVRAATWRNADHVFETRS
V*
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mRNA from alignment at P-littoralis_Contig1535:1515..3654+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1535.1.1 ID=mRNA_P-littoralis_Contig1535.1.1|Name=mRNA_P-littoralis_Contig1535.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2140bp|location=Sequence derived from alignment at P-littoralis_Contig1535:1515..3654+ (Pylaiella littoralis U1_48)
AGGTATGGATATGGACACCGCCACTGTCTCGACACCGGCGCGCCAAAGCT
TGGGGACTCGTCCTGCGGTGACACCGACACAATCGGCCAAGAAGGATGAA
GACGAGAGGCGTAAGCGCCGAACCTCCGGACCGCGCGCGGTCGGCACAGA
CGCTCAGCAGGCCACACCCGACTCCACGAAGGTGCGCCAATCGACTTATT
TGTTTTGTGCAGTACTGAGGGCGTACGAGGTTGACGGCACTCTGTTTGGT
TTCATATGCGCCGTTTGAAGTCGATGGTCATCCTCTATTATTTTCGCAAC
AGCGGCCCCAAGATAACGCGCATATACGAAGATGATCGTTGGCTACTGTC
TAAATATGCATGATTATTCTTTGCAGGGGAATGGGCCGAACTACCCTCGC
GGGTTTCAACCAGGTAGGGAGGGAAGCGACGGGGCGAAGCTGCCTGTGTC
CATGTTCCTCCAGCAAGGCGTCCTGGAGGAGGGCGTGCAAGAACACTCCA
CCGCTGGAGTGCACGCTCGTGTTGCCCGGTGGTGGTCTAGCAACGCGGAC
AGCAACGAGGACCGCGCTTTTACTGGGAACCGCACCTCGACCGGCAAAAC
CTTGGCTGCGGTGGTCAAGGTAGGTGTTGGTCAGGAGTGGTCGTCGTATA
CGCGCTATTCAATGGACGTGTTTATCCAAGTACCCGTCTCTTGCAACCTT
GCTGCCCCTCCTATGTGCCGGCGTTATTTACACAGTGACTCTCGTGGTTT
GTTGGCCGATTTATATAACCCGCGCCAGGACGAGGACCTCGCCTGCTACT
ACGGACTCAAGAAAAGCTTCTCTGGTAGGTCCACGACGTGGGTGCTGTCG
AGGTCGTCATTGGCACGAGAGCGAGCCGATGCGCAGTGGAGTTTTTGTCT
ACCGGCAGGATGGGCGGAGGAGTACGGTGCTGACGGCTCATGGAAGTTCA
AGACTAGCAAGGGTGGAACGCCCGTCTCGGTGAGCCTATCCTGGTGACGT
GCACGGTTGACCTCTTTATTTTTACGTTGGGGGGGGGGGGGTTATGCCGT
CTCTCACGTCGTCGCCCGAGGAAGCACAAGGGACTTCCCTTCCTGTGACT
TGAAGCAAGCAACCACGCGACCCAGGGGACGTTCTTTTTGTCGAGGGCAC
CACGAGCGTCTTCACTTTGGGCTAAGTCCACAACACGAAATCCTTTGTTC
TTACGACGTCTTTCTGTGGCCAGGCGTTTTCGGGGCTCACCCGTAAGACC
TCAAGCGCGGCAAGAACAAGAAAGACGGTACATCACGGGAGCGGACAGCC
CTCACTTGGATAGGCTTTTGGAGATCCTGGAGTTCTTCGACGTATGGCAG
ATTTCCCTCCAAGCGTCCTTCGAACAAGGGGAGTGGCAGAAGCACTCCAT
CACCGACCAGTCGTGGTTTGACATGCGCGCCACCATTCTTGGCTTCGTCT
CAATGGCACGGTAAATTTTCGCGGACAAGGATCTCGTCGAGGAAGTAGAC
GGGAAGGCGACCCGCTTCCTATACCCACGCATGTTCAGCCAGGTAACGAG
CGTTTTTCCTGTTCTGTTTTTTTCTTCGACGCAAGTACATAAACCGTTTG
GCGGTGACCACCAGGGCGCGCCCGTGCTGGTCAATATCTGCAAGTGAACT
CGGGGCTTGTGTGTGCGTATTTGTAAAGTATAAATTTGTGTTGGCTGGCG
CGACGCTATCATCGTGTGGTGCTGGTGTCAATTAACTCCTTTATGTCCGT
ACGTTCGACTCCCTCGACGCGCGTGACTGCCCCTTGCATCTCACCCAGGA
AATTCTCGAAATGAGGTTCGCGCACATAAGGGCTGGAATGGGGTGTCACA
AGGCTCCTACGGCGTCTCAGGCGGCTCAAGCTGGAATGCACGGAGATACT
TGTCGGCTGTCCTACGGTGAACGGCGTCGCAATTCGTCGAGATCGGGCGG
GCAGCCGTTCGACATCCAACAGGGAGCAACTCTGCGAGTGGCATTACCTG
TTAACGCGGAAGAGCGAGGAGAAGTAGTGAGAGCCGCCACGTGGCGCAAT
GCAGACCATGTGTTTGAGACGCGCTCGGTGTGAAGTACTGCTGTGTGTCG
TGTGCTGTGTAACGCCAAAGTAGGAGCTTTCGCTTTGTGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1535:1515..3654+

>mRNA_P-littoralis_Contig1535.1.1 ID=mRNA_P-littoralis_Contig1535.1.1|Name=mRNA_P-littoralis_Contig1535.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=906bp|location=Sequence derived from alignment at P-littoralis_Contig1535:1515..3654+ (Pylaiella littoralis U1_48)
ATGGATATGGACACCGCCACTGTCTCGACACCGGCGCGCCAAAGCTTGGG
GACTCGTCCTGCGGTGACACCGACACAATCGGCCAAGAAGGATGAAGACG
AGAGGCGTAAGCGCCGAACCTCCGGACCGCGCGCGGTCGGCACAGACGCT
CAGCAGGCCACACCCGACTCCACGAAGGGGAATGGGCCGAACTACCCTCG
CGGGTTTCAACCAGGTAGGGAGGGAAGCGACGGGGCGAAGCTGCCTGTGT
CCATGTTCCTCCAGCAAGGCGTCCTGGAGGAGGGCGTGCAAGAACACTCC
ACCGCTGGAGTGCACGCTCGTGTTGCCCGGTGGTGGTCTAGCAACGCGGA
CAGCAACGAGGACCGCGCTTTTACTGGGAACCGCACCTCGACCGGCAAAA
CCTTGGCTGCGGTGGTCAAGGACGAGGACCTCGCCTGCTACTACGGACTC
AAGAAAAGCTTCTCTGGTAGGTCCACGACGTGGGTGCTGTCGAGGTCGTC
ATTGGCACGAGAGCGAGCCGATGCGCAGTGGAGTTTTTGTCTACCGGCAG
GATGGGCGGAGGAGTACGGTGCTGACGGCTCATGGAAGTTCAAGACTAGC
AAGGGTGGAACGCCCGTCTCGGAAATTCTCGAAATGAGGTTCGCGCACAT
AAGGGCTGGAATGGGGTGTCACAAGGCTCCTACGGCGTCTCAGGCGGCTC
AAGCTGGAATGCACGGAGATACTTGTCGGCTGTCCTACGGTGAACGGCGT
CGCAATTCGTCGAGATCGGGCGGGCAGCCGTTCGACATCCAACAGGGAGC
AACTCTGCGAGTGGCATTACCTGTTAACGCGGAAGAGCGAGGAGAAGTAG
TGAGAGCCGCCACGTGGCGCAATGCAGACCATGTGTTTGAGACGCGCTCG
GTGTGA
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