mRNA_P-littoralis_Contig1531.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1531.1.1
Unique NamemRNA_P-littoralis_Contig1531.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1531.1.1 vs. uniprot
Match: A0A7S9KLA9_EPIFF (RING-type domain-containing protein n=1 Tax=Epichloe festucae (strain Fl1) TaxID=877507 RepID=A0A7S9KLA9_EPIFF)

HSP 1 Score: 61.2 bits (147), Expect = 8.450e-10
Identity = 28/66 (42.42%), Postives = 40/66 (60.61%), Query Frame = 1
Query:    1 SDIGVGQECAICMTDMLTSDKRCLV---GCGNTHVFHSKCIGKWMRRSGTCPVCRQDMGRCTTINA 189
            S +G G++CAIC    L  D+ CLV    C   H F  +C+G W+R  GTCP+CR++MG+   + A
Sbjct:  124 SRLGRGEDCAICKIPYL-EDQYCLVVELPCKGRHRFDLECVGPWLRSKGTCPMCREEMGKKKVVAA 188          
BLAST of mRNA_P-littoralis_Contig1531.1.1 vs. uniprot
Match: A0A179G8N0_METCM (Zinc finger domain-containing protein, ring-type n=1 Tax=Pochonia chlamydosporia 170 TaxID=1380566 RepID=A0A179G8N0_METCM)

HSP 1 Score: 58.5 bits (140), Expect = 1.020e-8
Identity = 26/58 (44.83%), Postives = 35/58 (60.34%), Query Frame = 1
Query:    7 IGVGQECAICMTDMLTSDKRCLV---GCGNTHVFHSKCIGKWMRRSGTCPVCRQDMGR 171
            +G   +CAIC    L  DK CLV    C   H F  +C+G W+R  GTCP+CR++MG+
Sbjct:  139 LGEEDDCAICKIPYL-EDKYCLVVELPCKGAHQFDLECVGPWLRSKGTCPMCREEMGK 195          
BLAST of mRNA_P-littoralis_Contig1531.1.1 vs. uniprot
Match: A0A168D938_9HYPO (Zinc finger, RING/FYVE/PHD-type n=1 Tax=Moelleriella libera RCEF 2490 TaxID=1081109 RepID=A0A168D938_9HYPO)

HSP 1 Score: 58.2 bits (139), Expect = 1.190e-8
Identity = 27/60 (45.00%), Postives = 36/60 (60.00%), Query Frame = 1
Query:   22 ECAICMTDMLTSDKRCLV---GCGNTHVFHSKCIGKWMRRSGTCPVCRQDMGRCTTINAP 192
            +CAIC    L  D+ CLV    C   H F  +C+G W+R  GTCP+CR++MGR  T+  P
Sbjct:  126 DCAICKIAYL-EDQYCLVVELPCKGHHRFDLECVGPWLRSKGTCPMCREEMGRKKTVVLP 184          
BLAST of mRNA_P-littoralis_Contig1531.1.1 vs. uniprot
Match: A0A8J5X9M7_DIALT (RING-type domain-containing protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5X9M7_DIALT)

HSP 1 Score: 58.9 bits (141), Expect = 1.570e-8
Identity = 19/48 (39.58%), Postives = 34/48 (70.83%), Query Frame = 1
Query:   22 ECAICMTDMLTSDKRCLVGCGNTHVFHSKCIGKWMRRSGTCPVCRQDM 165
            +C++CM   + +++  ++ C  +H FH+ CIG+W+ RS TCP+CR D+
Sbjct:  335 DCSVCMAAFVHAEELTVLPCAPSHAFHTHCIGRWLERSRTCPLCRTDL 382          
BLAST of mRNA_P-littoralis_Contig1531.1.1 vs. uniprot
Match: M1WIS6_CLAP2 (RING-type domain-containing protein n=1 Tax=Claviceps purpurea (strain 20.1) TaxID=1111077 RepID=M1WIS6_CLAP2)

HSP 1 Score: 57.8 bits (138), Expect = 1.600e-8
Identity = 26/61 (42.62%), Postives = 36/61 (59.02%), Query Frame = 1
Query:   19 QECAICMTDMLTSDKRCLV---GCGNTHVFHSKCIGKWMRRSGTCPVCRQDMGRCTTINAP 192
            ++CAIC    L  D+ CLV    C   H F  +C+G W+R  GTCP+CR+D+GR   +  P
Sbjct:  124 EDCAICKIPYL-EDQYCLVVELPCKGGHRFDLECVGPWLRSKGTCPMCREDVGRKKAVVVP 183          
BLAST of mRNA_P-littoralis_Contig1531.1.1 vs. uniprot
Match: A0A0B7KPB4_BIOOC (RING-type domain-containing protein (Fragment) n=1 Tax=Bionectria ochroleuca TaxID=29856 RepID=A0A0B7KPB4_BIOOC)

HSP 1 Score: 56.2 bits (134), Expect = 2.190e-8
Identity = 24/54 (44.44%), Postives = 34/54 (62.96%), Query Frame = 1
Query:   19 QECAICMTDMLTSDKRCLV---GCGNTHVFHSKCIGKWMRRSGTCPVCRQDMGR 171
            ++CAIC    L  D+ CLV    C   H F  +C+G W+R  GTCP+CR++MG+
Sbjct:   60 EDCAICKVPYL-EDEYCLVVELPCKGRHQFDLECVGPWLRSKGTCPMCREEMGK 112          
BLAST of mRNA_P-littoralis_Contig1531.1.1 vs. uniprot
Match: A0A8H4TXV7_9HYPO (RING-type domain-containing protein n=1 Tax=Fusarium sarcochroum TaxID=1208366 RepID=A0A8H4TXV7_9HYPO)

HSP 1 Score: 57.4 bits (137), Expect = 2.240e-8
Identity = 26/53 (49.06%), Postives = 33/53 (62.26%), Query Frame = 1
Query:   22 ECAICMTDMLTSDKRCLV---GCGNTHVFHSKCIGKWMRRSGTCPVCRQDMGR 171
            +CAIC    L  D+ CLV    C   H F  +C+G W+R  GTCPVCRQ+MG+
Sbjct:  126 DCAICKVPYL-EDEYCLVVELPCQGGHQFDLECVGPWLRSKGTCPVCRQEMGK 177          
BLAST of mRNA_P-littoralis_Contig1531.1.1 vs. uniprot
Match: UPI001DBD9506 (uncharacterized protein n=1 Tax=Fusarium redolens TaxID=48865 RepID=UPI001DBD9506)

HSP 1 Score: 57.4 bits (137), Expect = 2.240e-8
Identity = 26/53 (49.06%), Postives = 33/53 (62.26%), Query Frame = 1
Query:   22 ECAICMTDMLTSDKRCLV---GCGNTHVFHSKCIGKWMRRSGTCPVCRQDMGR 171
            +CAIC    L  D+ CLV    C   H F  +C+G W+R  GTCP+CRQDMG+
Sbjct:  126 DCAICKVPYL-EDQYCLVVELPCEGGHRFDLECVGPWLRSKGTCPMCRQDMGK 177          
BLAST of mRNA_P-littoralis_Contig1531.1.1 vs. uniprot
Match: A0A8H5SRT1_FUSHE (Zinc finger domain-containing protein n=2 Tax=Fusarium TaxID=5506 RepID=A0A8H5SRT1_FUSHE)

HSP 1 Score: 57.0 bits (136), Expect = 3.170e-8
Identity = 25/53 (47.17%), Postives = 33/53 (62.26%), Query Frame = 1
Query:   22 ECAICMTDMLTSDKRCLV---GCGNTHVFHSKCIGKWMRRSGTCPVCRQDMGR 171
            +CAIC    L  D+ CLV    C   H F  +C+G W+R  GTCP+CRQ+MG+
Sbjct:  127 DCAICKVPYL-EDEYCLVVELPCQGAHQFDLECVGPWLRSKGTCPMCRQEMGK 178          
BLAST of mRNA_P-littoralis_Contig1531.1.1 vs. uniprot
Match: A0A5C6GM23_9HYPO (RING-type domain-containing protein n=2 Tax=Metarhizium rileyi TaxID=1649241 RepID=A0A5C6GM23_9HYPO)

HSP 1 Score: 57.0 bits (136), Expect = 3.560e-8
Identity = 26/61 (42.62%), Postives = 36/61 (59.02%), Query Frame = 1
Query:    7 IGVGQECAICMTDMLTSDKRCLV---GCGNTHVFHSKCIGKWMRRSGTCPVCRQDMGRCTT 180
            +G   +CAIC    L  D+ CLV    C   H F  +C+G W+R  GTCP+CR++MG+  T
Sbjct:  132 LGRDDDCAICKIPYL-EDQYCLVVELPCKGAHRFDLECVGPWLRSKGTCPMCREEMGKKKT 191          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1531.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S9KLA9_EPIFF8.450e-1042.42RING-type domain-containing protein n=1 Tax=Epichl... [more]
A0A179G8N0_METCM1.020e-844.83Zinc finger domain-containing protein, ring-type n... [more]
A0A168D938_9HYPO1.190e-845.00Zinc finger, RING/FYVE/PHD-type n=1 Tax=Moelleriel... [more]
A0A8J5X9M7_DIALT1.570e-839.58RING-type domain-containing protein n=2 Tax=Diacro... [more]
M1WIS6_CLAP21.600e-842.62RING-type domain-containing protein n=1 Tax=Clavic... [more]
A0A0B7KPB4_BIOOC2.190e-844.44RING-type domain-containing protein (Fragment) n=1... [more]
A0A8H4TXV7_9HYPO2.240e-849.06RING-type domain-containing protein n=1 Tax=Fusari... [more]
UPI001DBD95062.240e-849.06uncharacterized protein n=1 Tax=Fusarium redolens ... [more]
A0A8H5SRT1_FUSHE3.170e-847.17Zinc finger domain-containing protein n=2 Tax=Fusa... [more]
A0A5C6GM23_9HYPO3.560e-842.62RING-type domain-containing protein n=2 Tax=Metarh... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1531contigP-littoralis_Contig1531:10471..10671 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog38727.Pavir.J33092.1.p
PFAMszf-RING_2
Model size201
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.67e-10
EggNOG OGsKOG0800@1|root,KOG0800@2759|Eukaryota,3827F@33090|Viridiplantae,3GRBB@35493|Streptophyta,3M87X@4447|Liliopsida,3IJXQ@38820|Poales
DescriptionRing finger domain
Cds size201
COG categoryO
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789734.6200862-CDS-P-littoralis_Contig1531:10470..106711680789734.6200862-CDS-P-littoralis_Contig1531:10470..10671Pylaiella littoralis U1_48CDSP-littoralis_Contig1531 10471..10671 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1531.1.1prot_P-littoralis_Contig1531.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1531 10471..10671 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1531.1.1

>prot_P-littoralis_Contig1531.1.1 ID=prot_P-littoralis_Contig1531.1.1|Name=mRNA_P-littoralis_Contig1531.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=67bp
SDIGVGQECAICMTDMLTSDKRCLVGCGNTHVFHSKCIGKWMRRSGTCPV
CRQDMGRCTTINAPRR*
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mRNA from alignment at P-littoralis_Contig1531:10471..10671+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1531.1.1 ID=mRNA_P-littoralis_Contig1531.1.1|Name=mRNA_P-littoralis_Contig1531.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=201bp|location=Sequence derived from alignment at P-littoralis_Contig1531:10471..10671+ (Pylaiella littoralis U1_48)
TCTGACATTGGTGTTGGTCAAGAATGTGCTATATGCATGACTGACATGTT GACTTCTGATAAACGTTGTCTGGTTGGGTGTGGAAACACACATGTGTTCC ACAGTAAATGTATTGGGAAATGGATGAGGCGATCGGGAACTTGTCCAGTA TGTCGACAGGACATGGGTAGATGCACTACGATCAACGCTCCTCGTCGGTA A
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Coding sequence (CDS) from alignment at P-littoralis_Contig1531:10471..10671+

>mRNA_P-littoralis_Contig1531.1.1 ID=mRNA_P-littoralis_Contig1531.1.1|Name=mRNA_P-littoralis_Contig1531.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=201bp|location=Sequence derived from alignment at P-littoralis_Contig1531:10471..10671+ (Pylaiella littoralis U1_48)
TCTGACATTGGTGTTGGTCAAGAATGTGCTATATGCATGACTGACATGTT
GACTTCTGATAAACGTTGTCTGGTTGGGTGTGGAAACACACATGTGTTCC
ACAGTAAATGTATTGGGAAATGGATGAGGCGATCGGGAACTTGTCCAGTA
TGTCGACAGGACATGGGTAGATGCACTACGATCAACGCTCCTCGTCGGTA
A
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