mRNA_P-littoralis_Contig153.127.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-littoralis_Contig153.127.1
Unique Name	mRNA_P-littoralis_Contig153.127.1
Type	mRNA
Organism	Pylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))

Homology

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BLAST of mRNA_P-littoralis_Contig153.127.1 vs. uniprot
Match: A0A6H5KTD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTD3_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 2.980e-16
Identity = 34/57 (59.65%), Postives = 45/57 (78.95%), Query Frame = 1

Query:    4 EPIPTSQYQPWLRSDSKAPRDGIAANLSMKVLADKMWSEDNGRDRTIAFYGVCSEPG 174
            +P+P+ QY PWLR+D KA RDGIAANL+M+VLAD++W+ D   +  +AFYGV  EPG
Sbjct:  304 DPVPSLQYGPWLRADGKAARDGIAANLAMRVLADEVWTGDTKPNGIVAFYGVGGEPG 360

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BLAST of mRNA_P-littoralis_Contig153.127.1 vs. uniprot
Match: A0A6H5JAK2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAK2_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 2.980e-16
Identity = 34/57 (59.65%), Postives = 45/57 (78.95%), Query Frame = 1

Query:    4 EPIPTSQYQPWLRSDSKAPRDGIAANLSMKVLADKMWSEDNGRDRTIAFYGVCSEPG 174
            +P+P+ QY PWLR+D KA RDGIAANL+M+VLAD++W+ D   +  +AFYGV  EPG
Sbjct:  358 DPVPSLQYGPWLRADGKAARDGIAANLAMRVLADEVWTGDTKPNGIVAFYGVGGEPG 414

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BLAST of mRNA_P-littoralis_Contig153.127.1 vs. uniprot
Match: A0A6H5KTG2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTG2_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 3.000e-16
Identity = 34/57 (59.65%), Postives = 45/57 (78.95%), Query Frame = 1

Query:    4 EPIPTSQYQPWLRSDSKAPRDGIAANLSMKVLADKMWSEDNGRDRTIAFYGVCSEPG 174
            +P+P+ QY PWLR+D KA RDGIAANL+M+VLAD++W+ D   +  +AFYGV  EPG
Sbjct:  447 DPVPSLQYGPWLRADGKAARDGIAANLAMRVLADEVWTGDTKPNGIVAFYGVGGEPG 503

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BLAST of mRNA_P-littoralis_Contig153.127.1 vs. uniprot
Match: A0A6H5L6D9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6D9_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 3.010e-16
Identity = 34/57 (59.65%), Postives = 45/57 (78.95%), Query Frame = 1

Query:    4 EPIPTSQYQPWLRSDSKAPRDGIAANLSMKVLADKMWSEDNGRDRTIAFYGVCSEPG 174
            +P+P+ QY PWLR+D KA RDGIAANL+M+VLAD++W+ D   +  +AFYGV  EPG
Sbjct: 1466 DPVPSLQYGPWLRADGKAARDGIAANLAMRVLADEVWTGDTKPNGIVAFYGVGGEPG 1522

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BLAST of mRNA_P-littoralis_Contig153.127.1 vs. uniprot
Match: A0A6H5L3Z2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Z2_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 3.370e-15
Identity = 32/57 (56.14%), Postives = 44/57 (77.19%), Query Frame = 1

Query:    4 EPIPTSQYQPWLRSDSKAPRDGIAANLSMKVLADKMWSEDNGRDRTIAFYGVCSEPG 174
            +P+P+ QY PWLR+D KA RDGIAA L+++VLAD++W+ D   +  +AFYGV  EPG
Sbjct:   79 DPVPSLQYGPWLRADGKAARDGIAAYLAIRVLADEVWTGDTKPNGIVAFYGVGGEPG 135

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BLAST of mRNA_P-littoralis_Contig153.127.1 vs. uniprot
Match: A0A6H5JHH4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHH4_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 1.260e-14
Identity = 33/56 (58.93%), Postives = 43/56 (76.79%), Query Frame = 1

Query:    7 PIPTSQYQPWLRSDSKAPRDGIAANLSMKVLADKMWSEDNGRDRTIAFYGVCSEPG 174
            P+P+ QY PWLR+D KA RDGIAA L+M+VLAD++W+ D   +  +AFY V SEPG
Sbjct:  122 PVPSLQYGPWLRADGKAARDGIAAYLAMRVLADEVWTGDTNPNGIVAFYCVGSEPG 177

[Close]

BLAST of mRNA_P-littoralis_Contig153.127.1 vs. uniprot
Match: A0A6H5JND3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JND3_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 2.370e-14
Identity = 31/57 (54.39%), Postives = 44/57 (77.19%), Query Frame = 1

Query:    4 EPIPTSQYQPWLRSDSKAPRDGIAANLSMKVLADKMWSEDNGRDRTIAFYGVCSEPG 174
            +P+P+ QY+PWLR+D KA RDGIAA L+M++LAD++W+ D   +  +A YGV  EPG
Sbjct:  698 DPVPSLQYEPWLRADGKAGRDGIAAYLAMRLLADEVWTGDTKPNGIVALYGVGDEPG 754

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BLAST of mRNA_P-littoralis_Contig153.127.1 vs. uniprot
Match: A0A6H5JME2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME2_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 4.410e-14
Identity = 32/57 (56.14%), Postives = 43/57 (75.44%), Query Frame = 1

Query:    4 EPIPTSQYQPWLRSDSKAPRDGIAANLSMKVLADKMWSEDNGRDRTIAFYGVCSEPG 174
            +P+P+ QY PWLR+D KA RDGIAA L+++VLAD+ W+ D   +  +AFYGV  EPG
Sbjct:  317 DPVPSLQYGPWLRADGKAARDGIAAYLAIRVLADEDWTGDTKPNGIVAFYGVGGEPG 373

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BLAST of mRNA_P-littoralis_Contig153.127.1 vs. uniprot
Match: A0A6H5JYE1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYE1_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 3.910e-13
Identity = 31/57 (54.39%), Postives = 42/57 (73.68%), Query Frame = 1

Query:    4 EPIPTSQYQPWLRSDSKAPRDGIAANLSMKVLADKMWSEDNGRDRTIAFYGVCSEPG 174
            +P+   QY PWLR+D KA R+GIAA L+M+VLAD++W+ D   +  +AFYGV  EPG
Sbjct:  577 DPVTALQYGPWLRADRKAARNGIAAYLAMRVLADEVWTGDTKPNGIVAFYGVGGEPG 633

[Close]

BLAST of mRNA_P-littoralis_Contig153.127.1 vs. uniprot
Match: A0A6H5KXZ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXZ6_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 6.870e-13
Identity = 31/57 (54.39%), Postives = 42/57 (73.68%), Query Frame = 1

Query:    4 EPIPTSQYQPWLRSDSKAPRDGIAANLSMKVLADKMWSEDNGRDRTIAFYGVCSEPG 174
            +P+P+ QY PWLR+D KA RDGIAA L+M+VLAD++W+     +  +AF GV  EPG
Sbjct:  152 DPVPSLQYGPWLRADGKAARDGIAAYLAMRVLADEVWTGYTKPNGIVAFNGVGGEPG 208

The following BLAST results are available for this feature:

BLAST of mRNA_P-littoralis_Contig153.127.1 vs. uniprot

BLAST of mRNA_P-littoralis_Contig153.127.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15


Match Name	E-value	Identity	Description
A0A6H5KTD3_9PHAE	2.980e-16	59.65	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JAK2_9PHAE	2.980e-16	59.65	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A6H5KTG2_9PHAE	3.000e-16	59.65	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L6D9_9PHAE	3.010e-16	59.65	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L3Z2_9PHAE	3.370e-15	56.14	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A6H5JHH4_9PHAE	1.260e-14	58.93	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JND3_9PHAE	2.370e-14	54.39	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JME2_9PHAE	4.410e-14	56.14	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JYE1_9PHAE	3.910e-13	54.39	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KXZ6_9PHAE	6.870e-13	54.39	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-littoralis_Contig153	contig	P-littoralis_Contig153:485831..486010 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Pylaiella littoralis U1_48 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	0
Model size	180
Hectar predicted targeting category	other localisation
Exons	1
Cds size	180

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680789734.5801015-CDS-P-littoralis_Contig153:485830..486010	1680789734.5801015-CDS-P-littoralis_Contig153:485830..486010	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig153 485831..486010 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-littoralis_Contig153.127.1	prot_P-littoralis_Contig153.127.1	Pylaiella littoralis U1_48	polypeptide	P-littoralis_Contig153 485831..486010 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-littoralis_Contig153:485831..486010-
coding sequence from alignment at P-littoralis_Contig153:485831..486010-

protein sequence of mRNA_P-littoralis_Contig153.127.1

>prot_P-littoralis_Contig153.127.1 ID=prot_P-littoralis_Contig153.127.1|Name=mRNA_P-littoralis_Contig153.127.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=60bp
EEPIPTSQYQPWLRSDSKAPRDGIAANLSMKVLADKMWSEDNGRDRTIAF
YGVCSEPGEE

mRNA from alignment at P-littoralis_Contig153:485831..486010-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-littoralis_Contig153.127.1 ID=mRNA_P-littoralis_Contig153.127.1|Name=mRNA_P-littoralis_Contig153.127.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=180bp|location=Sequence derived from alignment at P-littoralis_Contig153:485831..486010- (Pylaiella littoralis U1_48)
GAGGAACCAATCCCTACTTCACAGTATCAGCCGTGGCTTCGATCCGACTC
GAAGGCACCACGGGATGGAATTGCCGCGAACCTCTCCATGAAGGTCCTAG
CAGACAAGATGTGGTCAGAAGACAACGGGCGTGATCGGACCATAGCCTTC
TACGGTGTCTGTAGTGAGCCTGGCGAGGAA

Coding sequence (CDS) from alignment at P-littoralis_Contig153:485831..486010-

>mRNA_P-littoralis_Contig153.127.1 ID=mRNA_P-littoralis_Contig153.127.1|Name=mRNA_P-littoralis_Contig153.127.1|organism=Pylaiella littoralis U1_48|type=CDS|length=180bp|location=Sequence derived from alignment at P-littoralis_Contig153:485831..486010- (Pylaiella littoralis U1_48)
GAGGAACCAATCCCTACTTCACAGTATCAGCCGTGGCTTCGATCCGACTC
GAAGGCACCACGGGATGGAATTGCCGCGAACCTCTCCATGAAGGTCCTAG
CAGACAAGATGTGGTCAGAAGACAACGGGCGTGATCGGACCATAGCCTTC
TACGGTGTCTGTAGTGAGCCTGGCGAGGAA