mRNA_P-littoralis_Contig153.124.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig153.124.1
Unique NamemRNA_P-littoralis_Contig153.124.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig153.124.1 vs. uniprot
Match: A0A6H5K071_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K071_9PHAE)

HSP 1 Score: 166 bits (419), Expect = 7.950e-42
Identity = 89/163 (54.60%), Postives = 113/163 (69.33%), Query Frame = 2 
Query:  374 RDL*LLSDSKENFDDSFITRETWFDMILTILGVIALTRHIFRDEGWVNEGSRRRYKFPRDLSQ--DIIEHRFGHIRPDQGTHKNPKKEAAFASGMKADAVRNAQQSKRRKSDRGSGPFRLDLGGDSARATMPVSEKQSKDPMRTRDRDRGDFIFEARSLRLRS 856
            +DL L   S    DD F+  +TW D+ LTILG +A+TR++F D+ WV EGSR RYKF RD +Q  D  E RFGHIR +QG HKNP+KE+AFA+G +AD VR AQ SKRR SDRG   F+LD+   +A AT+PV+E+Q + PMR     R  F+ EARSLR +S
Sbjct:  534 QDLNLFGGSDLALDDLFLPDQTWDDLRLTILGFVAMTRYVFGDDDWVTEGSRGRYKFMRDWNQASDTCEKRFGHIRANQGCHKNPRKESAFAAGHRADVVRKAQMSKRRDSDRGKDAFKLDMVSAAAEATLPVNEQQRRYPMRAEGAGRAGFVREARSLRRQS 696
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BLAST of mRNA_P-littoralis_Contig153.124.1 vs. uniprot
Match: A0A6H5K7Z3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z3_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 3.960e-18
Identity = 58/143 (40.56%), Postives = 80/143 (55.94%), Query Frame = 2 
Query:  422 FITRETWFDMILTILGVIALTRHIFRDEGWVNEGSRRRYKFPRDLSQDIIEHRFGHIRPDQGTHKNPKKEAAFASGMKADAVRNAQQSKRRKSDRGSG-PFRLDLGGDSARATMPVSEKQSKDPMRTRDRDRGDFIFEARSLR 847
            FIT  +W DM  TILG +A+ R++F+DE  V+ G   R+ +PR  SQDI+EHRF HIR  +GTHKNP    A  +    D  R    ++RR S R +G  F+L+      RA  P +  +    +R   RD    +FE+RS R
Sbjct:  532 FITDYSWTDMRTTILGFVAMCRYVFKDEDLVSGG---RFLYPRMFSQDILEHRFAHIRSGRGTHKNPTAMQAIEAARAGDTARMFHGTRRRNSSRSAGMAFQLE-DSQGVRAAFPANASERAQVVRAETRDDAHHVFESRSFR 670
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BLAST of mRNA_P-littoralis_Contig153.124.1 vs. uniprot
Match: A0A6H5KFP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFP1_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 8.710e-17
Identity = 56/142 (39.44%), Postives = 78/142 (54.93%), Query Frame = 2 
Query:  422 FITRETWFDMILTILGVIALTRHIFRDEGWVNE--GSRRRYKFPRDLSQDIIEHRFGHIRPDQGTHKNPKKEAAFASGMKADAVRNAQQSKRRKSDRGSGPFRLDLGGDSARATMPVSEKQSKDPMRTRDRDRGDFIFEARS 841
            FIT  +W DM   ILG +A++R+IF D   V E  G  RR+ +PR  SQDI+EHRF HIR   GTHK P    A       D  R +   +RR + R +G F +     S R  +PV+  + ++ +R    DR D +FE+R+
Sbjct:  751 FITDVSWKDMRSCILGFVAMSRYIFADRDLVEEEGGVPRRFLYPRMFSQDILEHRFAHIRTGMGTHKAPTATQAARQAKHGDTCRVSHGLQRRNASRSTGSFEVQSSA-SIRVALPVNASEREEVVRAATWDRDDHVFESRA 891
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig153.124.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K071_9PHAE7.950e-4254.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7Z3_9PHAE3.960e-1840.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFP1_9PHAE8.710e-1739.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig153contigP-littoralis_Contig153:478590..480637 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1170
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-11_002120.1
Cds size498
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig153.124.1prot_P-littoralis_Contig153.124.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig153 479719..480413 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789734.4155214-UTR-P-littoralis_Contig153:478589..4786991680789734.4155214-UTR-P-littoralis_Contig153:478589..478699Pylaiella littoralis U1_48UTRP-littoralis_Contig153 478590..478699 +
1680789734.4318497-UTR-P-littoralis_Contig153:479072..4792111680789734.4318497-UTR-P-littoralis_Contig153:479072..479211Pylaiella littoralis U1_48UTRP-littoralis_Contig153 479073..479211 +
1680789734.4440103-UTR-P-littoralis_Contig153:479519..4797181680789734.4440103-UTR-P-littoralis_Contig153:479519..479718Pylaiella littoralis U1_48UTRP-littoralis_Contig153 479520..479718 +
1680789734.4828005-UTR-P-littoralis_Contig153:480413..4806371680789734.4828005-UTR-P-littoralis_Contig153:480413..480637Pylaiella littoralis U1_48UTRP-littoralis_Contig153 480414..480637 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789734.4549391-CDS-P-littoralis_Contig153:479718..4798321680789734.4549391-CDS-P-littoralis_Contig153:479718..479832Pylaiella littoralis U1_48CDSP-littoralis_Contig153 479719..479832 +
1680789734.4698877-CDS-P-littoralis_Contig153:480029..4804131680789734.4698877-CDS-P-littoralis_Contig153:480029..480413Pylaiella littoralis U1_48CDSP-littoralis_Contig153 480030..480413 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig153.124.1

>prot_P-littoralis_Contig153.124.1 ID=prot_P-littoralis_Contig153.124.1|Name=mRNA_P-littoralis_Contig153.124.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=166bp
MILTILGVIALTRHIFRDEGWVNEGSRRRYKFPRDLSQDIIEHRFGHIRP
DQGTHKNPKKEAAFASGMKADAVRNAQQSKRRKSDRGSGPFRLDLGGDSA
RATMPVSEKQSKDPMRTRDRDRGDFIFEARSLRLRSNDQIDVGGVERGLA
GDPSREAATGVGLPL*
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mRNA from alignment at P-littoralis_Contig153:478590..480637+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig153.124.1 ID=mRNA_P-littoralis_Contig153.124.1|Name=mRNA_P-littoralis_Contig153.124.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2048bp|location=Sequence derived from alignment at P-littoralis_Contig153:478590..480637+ (Pylaiella littoralis U1_48)
AGTGCTCACGTGAGGAGCAGGCTGCACAGCTCCAGGTGTACCCTGGCATG
AAGCCGGAGCAATTTAACCGGAACAGCTTCACCTGCATGAGTGTACCACT
TTCGGCGAAGGTGCGATGCTGTTGATGATGTGTTGATGTTGCCGCAAAAT
TCGGAGCTCGATTGTTTTTGACTTAATTTCCACGTCATTATGTCGCACAG
GGGTCTCGCAGTCCCAATTCGTAGGAATAGGCGCCCTTGCTTCCGGGGGT
CATTTTAAACCCCCTCATGTGGTCGCTCCCATTTGTGCGTTCGCTTGCAC
GTTTGTGATACTCCCAAAAAAACGTGAGACCCCCTTTTTGTGTAATATCA
TGACGAGTGTTGCATTCCGGGTGAAGTTTGGATCCCATTCATGACTTGCA
TCTTCTTCTTGAACCAAATCATTCTCACCACATGAGTCCTACGCTCTCCC
AATAAAACAAAAATTGTGGACCCCCATTCGCAGAATCTCTCCGGCAGCGC
GGAACGGGCGTGTAACAACGCCAACGCGAAGCTTATGCAAAAGGGCCAGC
CGCCCGACCCCTCTATTGCTTGCTATGCGGAGATGGCACACGAGGTCAAC
GATTTCGTGGATACCATGAACGGCAAGTGGAACCACCATGCGTGTTGTCG
GTGGTAAGGGAGTTTGCACTGTATATGCTGTCTCGGCTTTCTCCGGGCGT
TAAAAATAATAATGTAGATAGCGCCCCGAACACGTGTCCCTCCCGATCAT
ATAATTTCAAGAGTGAGCAGTGTTCTGACACTACCTTTGGTTCGGGGATG
TGTTAGTTTTGAGGGGGGGTGATGCAACAAACATGTACCCAGATACGAAA
AAAGATCGTAGTGTGGTGTATGGTGCTTGTTCAGAGCTTCTGATTACTTA
TCGTCTACCATGCCCGGACAAAAACTGCAGGTGCATACCAACGCAACACG
GTCGACGTCAAGAAGAAGATCGACATCTGGAAGAGCTGCATCAGCTCTGA
AGACAGCCCTCCCCTGGACCGACTTCTGGAAATCCTGCAGTGATTCGACG
GAGGAGGGATTTATAGCTTTTATCCGACAGCAAAGAAAACTTCGACGATT
CGTTCATCACCCGAGAGACCTGGTTCGACATGATACTCACTATCCTTGGG
GTCATAGCTTTGACGCGCCATATTTTCCGAGACGAGGGGTGGGTGAACGA
GGGATCGCGTCGTCGGTACAAATTCCCTCGGGACCTGAGCCAGGCAAGTG
TTGGTATCCGAGTCCCCCCCCCCCCCCCCCCCCCGATATTGGCGTTATCG
TGTTGTTGCGGCACCATCACCACACCCGTGTGGTGCGTGCCGATAACTAG
CAAAGAAGGCTGACAGGCCGCATACCGATGTTCTTGATAAAATTGGAATA
ACCGTGTATGTTGCTTTTTTTTTCCTTCAACGTGCGGCAGGACATCATCG
AACACAGGTTTGGTCACATCCGTCCAGACCAGGGGACTCACAAGAACCCG
AAGAAGGAGGCTGCGTTTGCCTCCGGCATGAAAGCAGATGCCGTTAGGAA
CGCGCAGCAGTCCAAGCGTCGCAAATCTGATCGCGGAAGCGGCCCTTTTA
GACTAGACCTGGGTGGCGATTCAGCCCGCGCAACTATGCCAGTCAGTGAG
AAACAGAGCAAAGACCCAATGAGGACCCGGGATCGGGACAGGGGTGACTT
CATATTTGAGGCGAGGAGTTTACGCCTTCGGTCGAATGACCAAATTGATG
TAGGGGGAGTTGAGCGTGGCTTGGCAGGCGACCCCTCGAGGGAGGCAGCG
ACAGGAGTTGGGTTGCCTTTGTAAACGATCTAGGTACGCGGTGGTGCTGG
AATAATCTCGCCTTGAAATGATGGATTTTTCACCGCCCATCGCTTGATTT
TTCAGTTGTAGCCGTTCACCCACTTGGGGCGCGTTTATCTATCCCTGCAC
TAATTTGCGTCGAGGGACAGCGAACAGTGCGCTGGTCGCCATGTTTGTGT
CGTTGCCCACGACTTATCTACAGTCGACACATTACTCCGGGATATTAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig153:478590..480637+

>mRNA_P-littoralis_Contig153.124.1 ID=mRNA_P-littoralis_Contig153.124.1|Name=mRNA_P-littoralis_Contig153.124.1|organism=Pylaiella littoralis U1_48|type=CDS|length=498bp|location=Sequence derived from alignment at P-littoralis_Contig153:478590..480637+ (Pylaiella littoralis U1_48)
ATGATACTCACTATCCTTGGGGTCATAGCTTTGACGCGCCATATTTTCCG
AGACGAGGGGTGGGTGAACGAGGGATCGCGTCGTCGGTACAAATTCCCTC
GGGACCTGAGCCAGGACATCATCGAACACAGGTTTGGTCACATCCGTCCA
GACCAGGGGACTCACAAGAACCCGAAGAAGGAGGCTGCGTTTGCCTCCGG
CATGAAAGCAGATGCCGTTAGGAACGCGCAGCAGTCCAAGCGTCGCAAAT
CTGATCGCGGAAGCGGCCCTTTTAGACTAGACCTGGGTGGCGATTCAGCC
CGCGCAACTATGCCAGTCAGTGAGAAACAGAGCAAAGACCCAATGAGGAC
CCGGGATCGGGACAGGGGTGACTTCATATTTGAGGCGAGGAGTTTACGCC
TTCGGTCGAATGACCAAATTGATGTAGGGGGAGTTGAGCGTGGCTTGGCA
GGCGACCCCTCGAGGGAGGCAGCGACAGGAGTTGGGTTGCCTTTGTAA
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