mRNA_P-littoralis_Contig153.110.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig153.110.1
Unique NamemRNA_P-littoralis_Contig153.110.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig153.110.1 vs. uniprot
Match: A0A6H5JFU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFU5_9PHAE)

HSP 1 Score: 136 bits (343), Expect = 1.780e-32
Identity = 71/161 (44.10%), Postives = 96/161 (59.63%), Query Frame = 2 
Query:    2 SFDKTRLGRFRSTDDAMGQLAFTFFTFTFPAVVVAFIVKQT-------------TNARIGTRQKKANNGNARWPEGGIDMSTMYSLFGIVLALGLVKLPAMEDHWDVSKFHDFELLRSCMIRDMFALIYCRFFHMAPGGGPKRRRDDTLSAIW---YHIRF 436
            +FD  +LGRF  + D +G+LAFTFF+  FPA V+  +V++T                    R KKA  G + WP+ GI    M  + GI+LA+GLV+LPA+ DHW    FHD++L+R+C+ RDM  LIY RFFHMA  G PKR +D T    W   +HIR+
Sbjct:  681 AFDPDKLGRF--SVDELGELAFTFFSIMFPAAVILLLVRKTYEYFNFCRSTKNPKEQEQRHRDKKARKGKSSWPKKGITKRMMQGVIGIILAIGLVQLPAVHDHWSCHSFHDYKLVRACLPRDMSLLIYGRFFHMASSGAPKRLQDGTTEPGWGSLHHIRY 839
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BLAST of mRNA_P-littoralis_Contig153.110.1 vs. uniprot
Match: A0A6H5L3T1_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3T1_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 7.110e-32
Identity = 71/161 (44.10%), Postives = 97/161 (60.25%), Query Frame = 2 
Query:    2 SFDKTRLGRFRSTDDAMGQLAFTFFTFTFPAVVVAFIVKQT---------TNARIGTRQK----KANNGNARWPEGGIDMSTMYSLFGIVLALGLVKLPAMEDHWDVSKFHDFELLRSCMIRDMFALIYCRFFHMAPGGGPKRRRDDTLSAIW---YHIRF 436
            +FD  +LGRF  + D +G+LAFTFF+  FPA V+  +V++T         T    G  Q+    KA  G + WP+ GI  S M  +  I+L +GLV+LPAM DHW    FHD++L+R+C+ RDMF LIY RFFHMA  G P+R +  T    W   +HIR+
Sbjct:  475 AFDPDKLGRF--SVDELGELAFTFFSIMFPAAVILLLVRKTNEYFNFCRSTKNPKGQEQRHRDQKARKGKSSWPKKGITKSMMQGVISIILTIGLVQLPAMHDHWSCHSFHDYKLVRACLPRDMFLLIYGRFFHMASSGAPERLQGGTTEPGWDSLHHIRY 633
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BLAST of mRNA_P-littoralis_Contig153.110.1 vs. uniprot
Match: A0A6H5KUF1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUF1_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 9.000e-13
Identity = 40/99 (40.40%), Postives = 51/99 (51.52%), Query Frame = 2 
Query:  146 RQKKANNGNARWPEGGIDMSTMYSLFGIVLALGLVK-------LPAMEDHWDVSKFHDFELLRSCMIRDMFALIYCRFFHMAPGGGPKRRRDDTLSAIW 421
            R KKA  G + WP+  I  S M  + GI   L             A+ DH     FHD++L+R+C+ RD F LIY RFFHMA  G P+R +D T    W
Sbjct:  591 RDKKARKGKSSWPKKAITKSMMQGVIGIRSDLSAATGGHFQATNAAVHDHLSCHSFHDYKLVRACLPRDTFLLIYGRFFHMASSGAPERLQDGTTEPCW 689
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BLAST of mRNA_P-littoralis_Contig153.110.1 vs. uniprot
Match: A0A6H5KIE0_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIE0_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 2.280e-10
Identity = 37/102 (36.27%), Postives = 51/102 (50.00%), Query Frame = 2 
Query:  149 QKKANNGNARWPEGGIDMSTMYSLFGIVLALGLVKLPAMEDHWDVSKFHDFELLRSCMIRDMFALIYCRFFHMAPGGGPKR--RRDDTLSAIW---YHIRFL 439
            +K    G    PE   +   +Y + GI + +GL K   M  HW  S   D+ L+R CM RD+F L+YCRF H + G  P R    D T +  +   +HIR L
Sbjct:  174 EKTRTLGMVTLPEPAFERKHIYGMLGITITMGLTKKTHMRKHWSRSLHDDYPLVRECMSRDLFELLYCRFIHCSDGNAPPRWAGEDKTPNPEFDSKWHIREL 275
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BLAST of mRNA_P-littoralis_Contig153.110.1 vs. uniprot
Match: A0A6H5KNV0_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNV0_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 3.500e-10
Identity = 37/102 (36.27%), Postives = 51/102 (50.00%), Query Frame = 2 
Query:  149 QKKANNGNARWPEGGIDMSTMYSLFGIVLALGLVKLPAMEDHWDVSKFHDFELLRSCMIRDMFALIYCRFFHMAPGGGPKR--RRDDTLSAIW---YHIRFL 439
            +K    G    PE   +   +Y + GI + +GL K   M  HW  S   D+ L+R CM RD+F L+YCRF H + G  P R    D T +  +   +HIR L
Sbjct:  465 EKTRTLGMVTLPEPAFERKHIYGMLGITITMGLTKKTRMRKHWSRSLHDDYPLVRECMSRDLFELLYCRFIHCSDGNAPPRWAGEDKTPNPEFDSKWHIREL 566
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BLAST of mRNA_P-littoralis_Contig153.110.1 vs. uniprot
Match: A0A6H5JW40_9PHAE (HTH La-type RNA-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW40_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 3.960e-10
Identity = 37/102 (36.27%), Postives = 51/102 (50.00%), Query Frame = 2 
Query:  149 QKKANNGNARWPEGGIDMSTMYSLFGIVLALGLVKLPAMEDHWDVSKFHDFELLRSCMIRDMFALIYCRFFHMAPGGGPKR--RRDDTLSAIW---YHIRFL 439
            +K    G    PE   +   +Y + GI + +GL K   M  HW  S   D+ L+R CM RD+F L+YCRF H + G  P R    D T +  +   +HIR L
Sbjct:  681 EKTRTLGMVTLPEPAFERKHIYGMLGITITMGLTKKTRMRKHWSRSLHDDYPLVRECMSRDLFELLYCRFIHCSDGNAPPRWAGEDKTPNPEFDSKWHIREL 782
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BLAST of mRNA_P-littoralis_Contig153.110.1 vs. uniprot
Match: A0A6H5K5H6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5H6_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 1.340e-8
Identity = 32/86 (37.21%), Postives = 46/86 (53.49%), Query Frame = 2 
Query:  209 MYSLFGIVLALGLVKLPAMEDHWDVSKFHDFELLRSCMIRDMFALIYC-RFFHMAPGGGPKRRRDD-----TLSAIWYHIRFL*FL 448
            +Y + G+ + +GL K   M   W  S+ HD+ L+R+CM RD F L+YC RF H +    P R  DD        + W HIR + +L
Sbjct:  151 IYGMVGLTITMGLTKKTRMRKRWSTSQRHDYPLVRNCMSRDKFELLYCCRFIHCSDANAPSRLLDDGEDDPDYDSKW-HIRIMGYL 235
[Close]
BLAST of mRNA_P-littoralis_Contig153.110.1 vs. uniprot
Match: A0A6H5K2B4_9PHAE (DDE_Tnp_1_7 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2B4_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 9.050e-8
Identity = 32/97 (32.99%), Postives = 45/97 (46.39%), Query Frame = 2 
Query:  167 GNARWPEGGIDMSTMYSLFGIVLALGLVKLPAMEDHWDVSKFHDFELLRSCMIRDMFALIYCRFFHMAPGGGPK------RRRDDTLSAIWYHIRFL 439
            G    PE       +Y + GI + +G  K   +  HW  S   D+ L+R CM RD+F L+YCRF H + G  P       +  +    + W HIR L
Sbjct:  532 GMVTLPEPAFARKHIYGMLGITITMGFTKKTRIRKHWSRSLHDDYPLVRECMSRDLFELLYCRFIHCSDGNAPPHWTGEDKTPNPEFDSKW-HIREL 627
[Close]
BLAST of mRNA_P-littoralis_Contig153.110.1 vs. uniprot
Match: A0A6H5JJP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJP9_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 1.050e-7
Identity = 29/81 (35.80%), Postives = 40/81 (49.38%), Query Frame = 2 
Query:  149 QKKANNGNARWPEGGIDMSTMYSLFGIVLALGLVKLPAMEDHWDVSKFHDFELLRSCMIRDMFALIYCRFFHMAPGGGPKR 391
            +K    G    PE   +   +Y + GI + +GL     M  HW  S   D+ L+R CM RD+F L+Y RF H + G  P R
Sbjct:  576 KKTRTLGMVTLPEPAFERKHIYGMLGITITMGLTMKTRMRKHWSRSLHDDYPLVRKCMSRDLFELLYSRFIHCSDGNAPPR 656
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig153.110.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5JFU5_9PHAE1.780e-3244.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L3T1_9PHAE7.110e-3244.10DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5KUF1_9PHAE9.000e-1340.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KIE0_9PHAE2.280e-1036.27DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5KNV0_9PHAE3.500e-1036.27DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5JW40_9PHAE3.960e-1036.27HTH La-type RNA-binding domain-containing protein ... [more]
A0A6H5K5H6_9PHAE1.340e-837.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2B4_9PHAE9.050e-832.99DDE_Tnp_1_7 domain-containing protein (Fragment) n... [more]
A0A6H5JJP9_9PHAE1.050e-735.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig153contigP-littoralis_Contig153:437716..440062 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog6500.XP_005111750.1
PFAMsDDE_Tnp_1_7
Model size865
Max annot lvl33208|Metazoa
Hectar predicted targeting categorysignal peptide
Exons2
Evalue0.000509
EggNOG OGs28PUT@1|root,2QWHD@2759|Eukaryota,38EA4@33154|Opisthokonta,3BMU4@33208|Metazoa,3CZSB@33213|Bilateria
DescriptionTransposase IS4
Cds size393
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789734.2696948-UTR-P-littoralis_Contig153:437715..4377641680789734.2696948-UTR-P-littoralis_Contig153:437715..437764Pylaiella littoralis U1_48UTRP-littoralis_Contig153 437716..437764 +
1680789734.308196-UTR-P-littoralis_Contig153:439639..4400621680789734.308196-UTR-P-littoralis_Contig153:439639..440062Pylaiella littoralis U1_48UTRP-littoralis_Contig153 439640..440062 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789734.28213-CDS-P-littoralis_Contig153:437764..4378321680789734.28213-CDS-P-littoralis_Contig153:437764..437832Pylaiella littoralis U1_48CDSP-littoralis_Contig153 437765..437832 +
1680789734.297294-CDS-P-littoralis_Contig153:439314..4396391680789734.297294-CDS-P-littoralis_Contig153:439314..439639Pylaiella littoralis U1_48CDSP-littoralis_Contig153 439315..439639 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig153.110.1prot_P-littoralis_Contig153.110.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig153 437765..439639 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig153.110.1

>prot_P-littoralis_Contig153.110.1 ID=prot_P-littoralis_Contig153.110.1|Name=mRNA_P-littoralis_Contig153.110.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=131bp
MGQLAFTFFTFTFPAVVVAFIVKQTTNARIGTRQKKANNGNARWPEGGID
MSTMYSLFGIVLALGLVKLPAMEDHWDVSKFHDFELLRSCMIRDMFALIY
CRFFHMAPGGGPKRRRDDTLSAIWYHIRFL*
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mRNA from alignment at P-littoralis_Contig153:437716..440062+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig153.110.1 ID=mRNA_P-littoralis_Contig153.110.1|Name=mRNA_P-littoralis_Contig153.110.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2347bp|location=Sequence derived from alignment at P-littoralis_Contig153:437716..440062+ (Pylaiella littoralis U1_48)
GAGCTTCGACAAGACGAGACTTGGTCGGTTTAGATCCACCGACGACGCCA
TGGGGCAGCTGGCATTCACCTTTTTCACCTTCACGTTCCCTGCAGTGGTC
GTTGCTTTTATCGTGAAGCAGGTGGGACATTAGGCATTTCTTCCTTCAAT
CTTTTCCACACCTCGGCATGAGGATTACCTTTTGGCAACAAGGCAGACGA
GAGGAATTTACTTTACAAGTGGGTTCGAGCAAAAGCATTGCTTATATTCC
GATTTTGTGTCGTACAACCCAACAAAAAAAACAATCCATCGCAAATTTGC
AAGGAGTCTGCGCCAAAATAGTTGTTGCCTGATCGCCGACACAACTAGTC
TGCCGGCTGGCAAAGTAAGAGCTGAGGGTGCCAGATCAGGCGAAGGAACT
GCCACCGAGAGCAATAAACGATGTGTTCCGTAAACTCTTCTATACTAACG
GCAGCAGCAGCAGCAGAGAGAGGGAGTGGGTGTTTGGGGTGTTTGTCAAA
GCACATCTTTCGCATATGACACCCACCGCTGCGGCTGCCGTAGAAGAGCT
GACTCATACTTTAGCGTCGGTTCTGTCTTGCAGTGCAGCAGTGGGTTTGT
TCGGTGTCTTTTGCTCTGTGGATGTGTTGGCTCATCTGTAGCAGTAGCAG
CAGCAGTTGTTGGGTTTGTGTGTGTTGCCCTTAATTCAGCAGCAACAACA
AGAGTGAAAGCGTGGACGGAGCTGGCCGTGGGTTGATCGTTGTCGACGGT
CGTGAGGAAGCAACGGGCAGTTTCGTGAATCGAATGATGCCGGGTATATT
TGACCAATCTCAAAACGTGCAGACGCGGACTCGCTTGGCACCGCAATATA
TTTTTTTAACGAGCATAGCAGTGCATTTAAACTACAGGCGATGATATAGG
GTAGATTAACAACGAACAGTATGGCATTAGACTCACAAGGTaatgAATGC
ACCGTTAGCACGGTGACGAGAAAACTGGGAACGAATTTTGAAATCAGAAC
GAAGTGGAAGCGTTTTTTCTCATTCACATTCGAAGTAAGTATTCTATGAA
GGCACCTGGCGGAGGGGGGAGGGGGGGGcggtTTATGACGCGACACATCT
CGGATCGCAAAAGCCATACAATAGTTAGGGGTCGAAGGTGCCTTCGAGGT
CTACTATTTGCCGAGTTAAAACACAAAATATTGTGTCACTTCGTTCTCAT
TTCAAAGTTCGTTCCCGTTCTTCTTGTCACCGTGTTCGTTGCAGCTTGCC
CGAGGTCATCAGGCTTGAAATATCGTTTGTTACATACAGGAATTTCAAGT
ACTGTGTTCGTCGCAGTTACGTGGCCTCTCGGGGAAACCCCTAGCGGAAA
CTTGGGAAGATAAATTGTTCAGCGCAAATAAATTATTTCAACAAATTATT
CGGAAGTGACCCATGTGCGAGGTTGTTCAATGCCCCTTATTTCCTGACAC
ATTCGCGTCGCTTCCCATGTTGAAATGACCACATTGCACCGTGGCCTCGC
TCTTCCTCGACTAAAGGCTAACTAGCACATGCTTCCTTGCGTTTGCCGTC
ACTTTAGACAAACGACTTCACCTTCTGCACGAAAACTCCGATCGACGAGG
CAGACGACAAACGCGAGGATAGGCACAAGGCAAAAGAAGGCAAACAACGG
CAACGCCCGGTGGCCTGAAGGCGGTATCGATATGAGCACCATGTACAGCC
TCTTTGGCATCGTCCTTGCGCTGGGCCTTGTCAAGCTTCCAGCGATGGAA
GACCACTGGGACGTCAGCAAGTTCCACGACTTCGAGTTGCTCCGATCGTG
CATGATTCGAGACATGTTTGCCCTCATCTACTGCCGTTTCTTTCACATGG
CGCCTGGTGGTGGTCCGAAGAGGCGCAGGGATGACACATTATCGGCTATT
TGGTATCATATTCGGTTCTTATAGTTCCTTGGGAGAGGGCGTGCCAAAAA
AGCCTGCCTCTATGTGTACAGGCAAAACATCCACAACAGAAGTTTCCTAC
CAATATTATTTGTTTTGCAGCGAACACCGGCACTCCACGGGATAATTTAG
TTCATGATCTATTTTTGTTTTGGGGGGGGTCGTGTATGTTGCTATTTTCG
TGTGCGTGCGTTTTTGTGCGGTCGCCCCGGGAGCAAGAGCAACAATCAAA
ACGTTCAAACTTTGGGGCGTGATTATTTCGCACAAGTTCCAACACACTTC
CGTCTATTTCGTGCTTAGTATGCTCATTTTCCAAACACATTTTGAGCGTT
CTCGTTGGGCAAGGGCGTGAACATACCGTAAGTTACGGAGTTTTTCCCCC
GGCGGGAGGATCTTTTTTTCCCCCGGCGGGGGGATCTTTTTTTTTTT
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Coding sequence (CDS) from alignment at P-littoralis_Contig153:437716..440062+

>mRNA_P-littoralis_Contig153.110.1 ID=mRNA_P-littoralis_Contig153.110.1|Name=mRNA_P-littoralis_Contig153.110.1|organism=Pylaiella littoralis U1_48|type=CDS|length=393bp|location=Sequence derived from alignment at P-littoralis_Contig153:437716..440062+ (Pylaiella littoralis U1_48)
ATGGGGCAGCTGGCATTCACCTTTTTCACCTTCACGTTCCCTGCAGTGGT
CGTTGCTTTTATCGTGAAGCAGACGACAAACGCGAGGATAGGCACAAGGC
AAAAGAAGGCAAACAACGGCAACGCCCGGTGGCCTGAAGGCGGTATCGAT
ATGAGCACCATGTACAGCCTCTTTGGCATCGTCCTTGCGCTGGGCCTTGT
CAAGCTTCCAGCGATGGAAGACCACTGGGACGTCAGCAAGTTCCACGACT
TCGAGTTGCTCCGATCGTGCATGATTCGAGACATGTTTGCCCTCATCTAC
TGCCGTTTCTTTCACATGGCGCCTGGTGGTGGTCCGAAGAGGCGCAGGGA
TGACACATTATCGGCTATTTGGTATCATATTCGGTTCTTATAG
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