prot_P-littoralis_Contig153.90.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig153.90.1
Unique Nameprot_P-littoralis_Contig153.90.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length237
Homology
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BLAST of mRNA_P-littoralis_Contig153.90.1 vs. uniprot
Match: D7G8Q6_ECTSI (Mediator of RNA polymerase II transcription subunit 20 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Q6_ECTSI)

HSP 1 Score: 249 bits (637), Expect = 3.440e-81
Identity = 126/185 (68.11%), Postives = 154/185 (83.24%), Query Frame = 0 
Query:   54 MRFGVNTTAPFVGMKRDEGIEHPFAKQYFIRSASDRGTRLMVVQELAEESPCESPPEGKLTHVLSFEGEDDLERISATK--GMVTRLKASIEGNAYKLGDFIIRVGKCKKGAVYRGLAMEVEYMPCCRVADGLAMIDALIPSINEDRGFVSTSDLRDALVFGTGPQFTVQHTALQITDLFNKVFA 236
            M+ GVN  APFVGMK++EGIE+PFAKQ+ IR  +DRGTR+MVVQE+AEE    + PEGKLTHVL  EGED LE + A    G+VTR+KASIEG+AY+LGDF++RVGKCKKGAV+RGLA+EVEY PC RVADGL+MI+A IPSI++D  F + SDL+D  +FG GPQF+V+H ALQITDLFN+VFA
Sbjct:    1 MKHGVNLAAPFVGMKKEEGIEYPFAKQFCIRR-NDRGTRVMVVQEMAEEPSYAAVPEGKLTHVL--EGEDPLEAMGAAARAGLVTRIKASIEGHAYRLGDFVVRVGKCKKGAVFRGLALEVEYRPCNRVADGLSMIEAFIPSIDQDGTFTAVSDLQDLAMFGRGPQFSVKHNALQITDLFNEVFA 182
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BLAST of mRNA_P-littoralis_Contig153.90.1 vs. uniprot
Match: A0A835Z8G4_9STRA (Mediator of RNA polymerase II transcription subunit 20 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8G4_9STRA)

HSP 1 Score: 112 bits (280), Expect = 3.720e-27
Identity = 67/144 (46.53%), Postives = 90/144 (62.50%), Query Frame = 0 
Query:   54 MRFGVNTTAPFVGM-KRDEGIEHPFAKQYFIRSASDRGTRLMVVQELAEESPCESPPEGKLTHVLSFEGEDDLERISATK-GMVTRLKASIEGNAYKLGDFIIRVGKCKKGAVYRGLAMEVEYMPCCRVADGLAMIDALIPSIN 195
            MRFGVNT   F+G   R +   +PF +   +R + + G R+ +VQE+ + +         L  VL   G+D LE   A K    TRLKA IEG+A+ LGDF +RVG C+KG+ YRGLAMEVEY PC  V DG AMI+AL+P+++
Sbjct:    1 MRFGVNTAVAFIGEGARQQDATYPFDRINVVRRSDEPG-RVCLVQEMGKRAAT-------LEQVLV--GDDALEADMAKKVPYPTRLKAVIEGSAFSLGDFTVRVGTCRKGSTYRGLAMEVEYHPCSSVRDGEAMIEALLPTLD 134
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig153.90.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G8Q6_ECTSI3.440e-8168.11Mediator of RNA polymerase II transcription subuni... [more]
A0A835Z8G4_9STRA3.720e-2746.53Mediator of RNA polymerase II transcription subuni... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013921Mediator complex, subunit Med20PFAMPF08612Med20coord: 136..203
e-value: 5.0E-10
score: 39.1
IPR013921Mediator complex, subunit Med20PANTHERPTHR12465UBIQUITIN SPECIFIC PROTEASE HOMOLOG 49coord: 132..234
NoneNo IPR availablePANTHERPTHR12465:SF0MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 20coord: 132..234

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig153contigP-littoralis_Contig153:336240..344223 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig153.90.1mRNA_P-littoralis_Contig153.90.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig153 336240..344223 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig153.90.1 ID=prot_P-littoralis_Contig153.90.1|Name=mRNA_P-littoralis_Contig153.90.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=237bp
LFGKPVAQEGGLQAVRSLEDHIVHVLGAETLDRWTVEVTYKMKQKKKKAV
GSEMRFGVNTTAPFVGMKRDEGIEHPFAKQYFIRSASDRGTRLMVVQELA
EESPCESPPEGKLTHVLSFEGEDDLERISATKGMVTRLKASIEGNAYKLG
DFIIRVGKCKKGAVYRGLAMEVEYMPCCRVADGLAMIDALIPSINEDRGF
VSTSDLRDALVFGTGPQFTVQHTALQITDLFNKVFA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013921Mediator_Med20