mRNA_P-littoralis_Contig153.78.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig153.78.1
Unique NamemRNA_P-littoralis_Contig153.78.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig153.78.1 vs. uniprot
Match: A0A6H5KRI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRI1_9PHAE)

HSP 1 Score: 301 bits (770), Expect = 7.500e-100
Identity = 166/218 (76.15%), Postives = 168/218 (77.06%), Query Frame = 2 
Query:    5 MDMDTATVSTPARQSLGTRPAVTRTQSAKKDEDERRKRRTSGPRAVGTDAQQATPDLTKGNGPNYPRGFQPGREGSDGAKLPVYMFLQQGVLEEGVQEHCTAGVHARVARWWSSNADSNEDRAFTGNCTSTGKILAAVVK--------DEDLACYYGLKKSFSGRSTTWVLSRSSLARERADAQWSFCLPAGWAEEYGADGSWKFKTSKGGTPVSDIL 634
            MDMDTATVSTPARQSLGTRPAVT TQSAKKDEDERRKRRTSGPRAVGTDAQQAT D TKGNGPNYP GF+PGREGSDGAKLPVYMFLQQG LEEGVQEH TA VHA VARWWSS ADSNEDRAFTGN TSTGKILA+VVK        DEDLA YYGLKKSFSG                            WAEEY ADGSWKFKTSKGGTPVS  L
Sbjct:   22 MDMDTATVSTPARQSLGTRPAVTPTQSAKKDEDERRKRRTSGPRAVGTDAQQATHDSTKGNGPNYPCGFKPGREGSDGAKLPVYMFLQQGALEEGVQEHTTAEVHAHVARWWSSYADSNEDRAFTGNRTSTGKILASVVKADLYIPRQDEDLAFYYGLKKSFSG----------------------------WAEEYSADGSWKFKTSKGGTPVSVSL 211
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BLAST of mRNA_P-littoralis_Contig153.78.1 vs. uniprot
Match: A0A6H5K1G6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1G6_9PHAE)

HSP 1 Score: 182 bits (462), Expect = 1.650e-54
Identity = 95/101 (94.06%), Postives = 96/101 (95.05%), Query Frame = 2 
Query:    5 MDMDTATVSTPARQSLGTRPAVTRTQSAKKDEDERRKRRTSGPRAVGTDAQQATPDLTKGNGPNYPRGFQPGREGSDGAKLPVYMFLQQGVLEEGVQEHCT 307
            MDMDTATVSTPARQSLGTRPAVT TQSAKKDEDERRKRRTSGPRAVGTDAQQAT D TKGNGPNYPRGF+PGREGSDGAKLPVYMFLQQG LEEGVQEH T
Sbjct:   22 MDMDTATVSTPARQSLGTRPAVTPTQSAKKDEDERRKRRTSGPRAVGTDAQQATHDSTKGNGPNYPRGFKPGREGSDGAKLPVYMFLQQGALEEGVQEHTT 122
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BLAST of mRNA_P-littoralis_Contig153.78.1 vs. uniprot
Match: A0A6H5KFP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFP1_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 1.770e-29
Identity = 64/93 (68.82%), Postives = 75/93 (80.65%), Query Frame = 2 
Query:  626 DILEMRFAHTRAGMGCHKAPTASQAAQAGMHGDTCRLSHGERRRNSSRSGGQPFDIQQGATLRVALPVNAEERGEVVRAATWRNADHVFETRS 904
            DILE RFAH R GMG HKAPTA+QAA+   HGDTCR+SHG +RRN+SRS G  F++Q  A++RVALPVNA ER EVVRAATW   DHVFE+R+
Sbjct:  800 DILEHRFAHIRTGMGTHKAPTATQAARQAKHGDTCRVSHGLQRRNASRSTGS-FEVQSSASIRVALPVNASEREEVVRAATWDRDDHVFESRA 891
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BLAST of mRNA_P-littoralis_Contig153.78.1 vs. uniprot
Match: A0A6H5K7Z3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z3_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 6.800e-22
Identity = 54/93 (58.06%), Postives = 63/93 (67.74%), Query Frame = 2 
Query:  626 DILEMRFAHTRAGMGCHKAPTASQAAQAGMHGDTCRLSHGERRRNSSRSGGQPFDIQQGATLRVALPVNAEERGEVVRAATWRNADHVFETRS 904
            DILE RFAH R+G G HK PTA QA +A   GDT R+ HG RRRNSSRS G  F ++    +R A P NA ER +VVRA T  +A HVFE+RS
Sbjct:  576 DILEHRFAHIRSGRGTHKNPTAMQAIEAARAGDTARMFHGTRRRNSSRSAGMAFQLEDSQGVRAAFPANASERAQVVRAETRDDAHHVFESRS 668
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BLAST of mRNA_P-littoralis_Contig153.78.1 vs. uniprot
Match: A0A6H5K994_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K994_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 1.800e-14
Identity = 44/74 (59.46%), Postives = 52/74 (70.27%), Query Frame = 2 
Query:  422 KDEDLACYYGLKKSFSGRSTTWVLSRSSLARERADAQWSFC--LPAGWAEEYGADGSWKFKTSKGGTPVSDILE 637
            +DEDLA YYGL+K  S + T WVLSRSSL  ERA+A  SF   LPAGW EE+G D SW FK +  GTPV+  +E
Sbjct:   63 RDEDLAQYYGLRK-VSSKPTKWVLSRSSLGEERAEAHISFGFGLPAGWCEEFGPDHSWTFKKTHDGTPVAISVE 135
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig153.78.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KRI1_9PHAE7.500e-10076.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1G6_9PHAE1.650e-5494.06Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KFP1_9PHAE1.770e-2968.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7Z3_9PHAE6.800e-2258.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K994_9PHAE1.800e-1459.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig153contigP-littoralis_Contig153:270907..272445 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size917
Hectar predicted targeting categoryother localisation
Exons4
Cds size906
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig153.78.1prot_P-littoralis_Contig153.78.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig153 270914..272441 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789733.4109168-UTR-P-littoralis_Contig153:270906..2709131680789733.4109168-UTR-P-littoralis_Contig153:270906..270913Pylaiella littoralis U1_48UTRP-littoralis_Contig153 270907..270913 -
1680789733.4597137-UTR-P-littoralis_Contig153:272441..2724451680789733.4597137-UTR-P-littoralis_Contig153:272441..272445Pylaiella littoralis U1_48UTRP-littoralis_Contig153 272442..272445 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789733.4240053-CDS-P-littoralis_Contig153:270913..2711981680789733.4240053-CDS-P-littoralis_Contig153:270913..271198Pylaiella littoralis U1_48CDSP-littoralis_Contig153 270914..271198 -
1680789733.4328973-CDS-P-littoralis_Contig153:271466..2716671680789733.4328973-CDS-P-littoralis_Contig153:271466..271667Pylaiella littoralis U1_48CDSP-littoralis_Contig153 271467..271667 -
1680789733.4419267-CDS-P-littoralis_Contig153:271826..2720691680789733.4419267-CDS-P-littoralis_Contig153:271826..272069Pylaiella littoralis U1_48CDSP-littoralis_Contig153 271827..272069 -
1680789733.4507258-CDS-P-littoralis_Contig153:272264..2724411680789733.4507258-CDS-P-littoralis_Contig153:272264..272441Pylaiella littoralis U1_48CDSP-littoralis_Contig153 272265..272441 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig153.78.1

>prot_P-littoralis_Contig153.78.1 ID=prot_P-littoralis_Contig153.78.1|Name=mRNA_P-littoralis_Contig153.78.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=302bp
MDMDTATVSTPARQSLGTRPAVTRTQSAKKDEDERRKRRTSGPRAVGTDA
QQATPDLTKGNGPNYPRGFQPGREGSDGAKLPVYMFLQQGVLEEGVQEHC
TAGVHARVARWWSSNADSNEDRAFTGNCTSTGKILAAVVKDEDLACYYGL
KKSFSGRSTTWVLSRSSLARERADAQWSFCLPAGWAEEYGADGSWKFKTS
KGGTPVSDILEMRFAHTRAGMGCHKAPTASQAAQAGMHGDTCRLSHGERR
RNSSRSGGQPFDIQQGATLRVALPVNAEERGEVVRAATWRNADHVFETRS
V*
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mRNA from alignment at P-littoralis_Contig153:270907..272445-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig153.78.1 ID=mRNA_P-littoralis_Contig153.78.1|Name=mRNA_P-littoralis_Contig153.78.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1539bp|location=Sequence derived from alignment at P-littoralis_Contig153:270907..272445- (Pylaiella littoralis U1_48)
AGGTATGGATATGGACACCGCCACTGTCTCGACACCCGCGCGCCAAAGCT
TGGGGACTCGTCCTGCGGTGACACGGACACAATCGGCCAAGAAGGATGAA
GACGAGAGGCGTAAGCGCCGAACCTCCGGACCGCGCGCGGTCGGCACAGA
CGCTCAGCAGGCCACACCCGACCTCACGAAGGTGCGCCAATCGACTTATT
TGTTTTGTGCAGTACTCAGGGCGTACGAGGTTGACGGCACTCTGTTTGGT
TTCATATGCGCCGTTTGATTTCGATGGTCGTCCTCTTTTATTTTCGCAAC
AGCGGCCCCAAGATAACGGGCATATACGAAGATGATCGTTGGCTACTGTC
TAAATATGCATGTTTATTCTTTGCAGGGGAATGGGCCGAACTACCCTCGC
GGGTTTCAACCAGGTAGGGAGGGAAGCGACGGGGCGAAGCTACCTGTGTA
CATGTTCCTCCAGCAAGGCGTCCTGGAGGAGGGCGTGCAAGAACACTGCA
CCGCTGGAGTGCACGCTCGTGTTGCCCGGTGGTGGTCTAGCAACGCGGAC
AGCAACGAGGACCGCGCTTTTACTGGGAACTGCACCTCGACCGGCAAAAT
CTTGGCTGCGGTGGTCAAGGTAGGTGTTGGTCAGGAGTGGTTGTCGTATA
CGCGCTATTCAATGGACGTGTTTATCCAAGTACCCGTCTCTTGCAACCTT
GCTGCCCCTCCCATGTGCCGGCGTTATTTACACAGTGACTCTCGTGGTAT
GTTGGCCGATTTATATAACCCGCGCCAGGACGAGGACCTCGCCTGCTACT
ACGGACTCAAGAAAAGCTTCTCTGGTAGGTCCACGACGTGGGTGCTGTCG
AGGTCGTCATTGGCACGAGAGCGAGCCGATGCGCAGTGGAGTTTTTGTCT
ACCGGCAGGATGGGCGGAGGAGTACGGTGCTGACGGCTCATGGAAGTTCA
AGACTAGCAAGGGTGGAACGCCCGTCTCGGTGAGCCTATCCTGGTGATGT
GCGCGGTTGAATTTTGTCTGTGTTGTAGAGATTGCAGATGAGTGGGCTAG
CTGGCGTGATAGGGCGCGCCCGTGCTGGTCAATAATCTGCAAGTGAACTC
GGGGCTTGTGTGTGCGTATTTGTAAAGTATATATTTTTGTTGGCTGGCGC
GACGCTATCGTCGTGTGGTGCTGGTGTCAATTAACTCCTTTATGTCCGTA
CGTTCGACTCCCTCGACGCGCGTGACTGCCCCTTGCATCTCACCCAGGAC
ATTCTCGAAATGAGGTTCGCGCACACAAGGGCTGGAATGGGGTGTCACAA
GGCTCCTACGGCGTCTCAGGCGGCTCAAGCTGGAATGCACGGAGATACTT
GTCGGCTGTCCCACGGTGAACGGCGTCGCAATTCGTCGAGATCGGGCGGG
CAGCCGTTCGACATCCAACAGGGAGCAACTTTGCGAGTGGCATTACCTGT
TAACGCGGAAGAGCGAGGAGAAGTAGTGAGAGCCGCCACGTGGCGCAATG
CAGACCATGTGTTCGAGACGCGCTCGGTGTGAAGTACTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig153:270907..272445-

>mRNA_P-littoralis_Contig153.78.1 ID=mRNA_P-littoralis_Contig153.78.1|Name=mRNA_P-littoralis_Contig153.78.1|organism=Pylaiella littoralis U1_48|type=CDS|length=906bp|location=Sequence derived from alignment at P-littoralis_Contig153:270907..272445- (Pylaiella littoralis U1_48)
ATGGATATGGACACCGCCACTGTCTCGACACCCGCGCGCCAAAGCTTGGG
GACTCGTCCTGCGGTGACACGGACACAATCGGCCAAGAAGGATGAAGACG
AGAGGCGTAAGCGCCGAACCTCCGGACCGCGCGCGGTCGGCACAGACGCT
CAGCAGGCCACACCCGACCTCACGAAGGGGAATGGGCCGAACTACCCTCG
CGGGTTTCAACCAGGTAGGGAGGGAAGCGACGGGGCGAAGCTACCTGTGT
ACATGTTCCTCCAGCAAGGCGTCCTGGAGGAGGGCGTGCAAGAACACTGC
ACCGCTGGAGTGCACGCTCGTGTTGCCCGGTGGTGGTCTAGCAACGCGGA
CAGCAACGAGGACCGCGCTTTTACTGGGAACTGCACCTCGACCGGCAAAA
TCTTGGCTGCGGTGGTCAAGGACGAGGACCTCGCCTGCTACTACGGACTC
AAGAAAAGCTTCTCTGGTAGGTCCACGACGTGGGTGCTGTCGAGGTCGTC
ATTGGCACGAGAGCGAGCCGATGCGCAGTGGAGTTTTTGTCTACCGGCAG
GATGGGCGGAGGAGTACGGTGCTGACGGCTCATGGAAGTTCAAGACTAGC
AAGGGTGGAACGCCCGTCTCGGACATTCTCGAAATGAGGTTCGCGCACAC
AAGGGCTGGAATGGGGTGTCACAAGGCTCCTACGGCGTCTCAGGCGGCTC
AAGCTGGAATGCACGGAGATACTTGTCGGCTGTCCCACGGTGAACGGCGT
CGCAATTCGTCGAGATCGGGCGGGCAGCCGTTCGACATCCAACAGGGAGC
AACTTTGCGAGTGGCATTACCTGTTAACGCGGAAGAGCGAGGAGAAGTAG
TGAGAGCCGCCACGTGGCGCAATGCAGACCATGTGTTCGAGACGCGCTCG
GTGTGA
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