mRNA_P-littoralis_Contig1019.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1019.2.1
Unique NamemRNA_P-littoralis_Contig1019.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1019.2.1 vs. uniprot
Match: A0A6H5JTB8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB8_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 7.290e-31
Identity = 56/130 (43.08%), Postives = 85/130 (65.38%), Query Frame = 1
Query:    4 CCVDMRPFSMAHRAGFQYFVGGLSPAYVTETIHKSTLSNILDALAADVRANLITKLKDHVDSCKKLGWGGPFFGVQSDLTSTHGTEFCTLTVSFIPRGHTEMERLTLTTKAFPGTHTASDVDPWIREVSL 393
            CC+D+RP  +    GF+ F+G LSP YVT T+ KST +  LD L   V ++++ +L+   +    +G+ GPF G Q DLT+  G E+ T TV+F+ +G T+M R+ L  +AFPG+HTA D+ PWI +++L
Sbjct:   21 CCIDLRPEQLRFDQGFKLFLGSLSPEYVTTTMAKSTFNQTLDELYGTVLSSVVGELRTLREENLGMGYSGPFLGAQLDLTTAAGEEYITFTVTFVKKGDTDMTRIALAARAFPGSHTAEDIQPWIEKLTL 150          
BLAST of mRNA_P-littoralis_Contig1019.2.1 vs. uniprot
Match: A0A6H5JGG8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG8_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 9.060e-31
Identity = 56/130 (43.08%), Postives = 85/130 (65.38%), Query Frame = 1
Query:    4 CCVDMRPFSMAHRAGFQYFVGGLSPAYVTETIHKSTLSNILDALAADVRANLITKLKDHVDSCKKLGWGGPFFGVQSDLTSTHGTEFCTLTVSFIPRGHTEMERLTLTTKAFPGTHTASDVDPWIREVSL 393
            CC+D+RP  +    GF+ F+G LSP YVT T+ KST +  LD L   V ++++ +L+   +    +G+ GPF G Q DLT+  G E+ T TV+F+ +G T+M R+ L  +AFPG+HTA D+ PWI +++L
Sbjct:  216 CCIDLRPEQLRFDQGFKLFLGSLSPEYVTTTMAKSTFNQTLDELYGTVLSSVVGELRTLREENLGMGYSGPFLGAQLDLTTAAGEEYITFTVTFVKKGDTDMTRIALAARAFPGSHTAEDIQPWIEKLTL 345          
BLAST of mRNA_P-littoralis_Contig1019.2.1 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 5.820e-30
Identity = 54/129 (41.86%), Postives = 81/129 (62.79%), Query Frame = 1
Query:    4 CCVDMRPFSMAHRAGFQYFVGGLSPAYVTETIHKSTLSNILDALAADVRANLITKLKDHVDSCKKLGWGGPFFGVQSDLTSTHGTEFCTLTVSFIPRGHTEMERLTLTTKAFPGTHTASDVDPWIREVS 390
            CC+++RP  M H  GF+ F+G LSP YV  T+   T    LD L + V+ +++  L+   + C  +G+ G F G Q DLT+  G E+ T TVS++ +G T++ R+ L  +AFPGTHTA D+ PWI E++
Sbjct:  214 CCINLRPQQMRHDDGFKLFLGALSPDYVESTMSNDTFDKNLDTLYSRVKTSIVDDLRTLREECLGMGYSGAFLGAQLDLTTVAGEEYITFTVSYVEKGSTDVTRVALACRAFPGTHTADDISPWIEELT 342          
BLAST of mRNA_P-littoralis_Contig1019.2.1 vs. uniprot
Match: A0A6H5KVP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVP4_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 8.310e-30
Identity = 55/127 (43.31%), Postives = 82/127 (64.57%), Query Frame = 1
Query:    4 CCVDMRPFSMAHRAGFQYFVGGLSPAYVTETIHKSTLSNILDALAADVRANLITKLKDHVDSCKKLGWGGPFFGVQSDLTSTHGTEFCTLTVSFIPRGHTEMERLTLTTKAFPGTHTASDVDPWIRE 384
            CC+D+RP  +    GF+ F+G LSP YVT T+ KST +  LD L   V ++++ +L+   +    +G+ GPF G Q DLT+  G E+ T TV+F+ +G T+M R+ L  +AFPG+HTA D+ PWI +
Sbjct: 1300 CCIDLRPEQLRFDQGFKLFLGSLSPEYVTTTMAKSTFNQTLDELYGTVLSSVVGELRTLREENLGMGYSGPFLGAQLDLTTAAGEEYITFTVTFVKKGDTDMTRIALAARAFPGSHTAEDIQPWIEK 1426          
BLAST of mRNA_P-littoralis_Contig1019.2.1 vs. uniprot
Match: A0A6H5JZU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZU3_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 8.910e-30
Identity = 53/130 (40.77%), Postives = 84/130 (64.62%), Query Frame = 1
Query:    4 CCVDMRPFSMAHRAGFQYFVGGLSPAYVTETIHKSTLSNILDALAADVRANLITKLKDHVDSCKKLGWGGPFFGVQSDLTSTHGTEFCTLTVSFIPRGHTEMERLTLTTKAFPGTHTASDVDPWIREVSL 393
            CC+++RP  M +  GF+ FVG LSP YV  T+  +T + +LD L   ++  ++  L+   + C  +G+GG F G Q DLT+  G E+ T  VS++ +G T++ R++L T+AFPG+HTA D+ PWI  ++L
Sbjct:   25 CCINLRPMQMRYDDGFKLFVGALSPQYVDTTMAATTFNKLLDTLHDRMKQAVVDDLRSVREECLGMGYGGAFLGAQLDLTTVAGEEYITFAVSYVKKGDTDVSRVSLATRAFPGSHTADDIKPWIEALTL 154          
BLAST of mRNA_P-littoralis_Contig1019.2.1 vs. uniprot
Match: A0A6H5JQI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQI6_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 1.690e-29
Identity = 54/130 (41.54%), Postives = 82/130 (63.08%), Query Frame = 1
Query:    4 CCVDMRPFSMAHRAGFQYFVGGLSPAYVTETIHKSTLSNILDALAADVRANLITKLKDHVDSCKKLGWGGPFFGVQSDLTSTHGTEFCTLTVSFIPRGHTEMERLTLTTKAFPGTHTASDVDPWIREVSL 393
            CC++ RP  M +  GF+ FVG LSP YV  T+  +T + +LD L   V   ++  L+   + C  +G+GG F G Q DLT+  G E+ T  VS++ +G T++ R++L T+AFPG+HTA D+ PWI  ++L
Sbjct:   25 CCINPRPMQMRYDDGFKLFVGALSPQYVDTTMASTTFNKLLDTLHDRVEQAVVDDLRSVREECLGMGYGGAFLGAQLDLTTVAGEEYITFAVSYVKKGDTDVSRVSLATRAFPGSHTADDIKPWIEALTL 154          
BLAST of mRNA_P-littoralis_Contig1019.2.1 vs. uniprot
Match: A0A6H5KFJ9_9PHAE (Fanconi-associated nuclease n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFJ9_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 6.230e-28
Identity = 53/127 (41.73%), Postives = 77/127 (60.63%), Query Frame = 1
Query:    7 CVDMRPFSMAHRAGFQYFVGGLSPAYVTETIHKSTLSNILDALAADVRANLITKLKDHVDSCKKLGWGGPFFGVQSDLTSTHGTEFCTLTVSFIPRGHTEMERLTLTTKAFPGTHTASDVDPWIREV 387
            C+++RP  M H  GF+ F+G LSP YV  T+   T    LD L   V  +++  L+   + C  +G+ G F G Q DLT+  G E+ T TVS++ +G T++ R+ L  +AFPGTHTA D+ PWI E+
Sbjct:  331 CINLRPQQMRHDDGFKLFLGALSPDYVESTMSNDTFDKNLDTLYGKVNTSVVDDLRTLREECLGMGYSGAFLGAQLDLTTVAGEEYITFTVSYVKKGSTDVTRVALACRAFPGTHTADDIRPWIEEL 457          
BLAST of mRNA_P-littoralis_Contig1019.2.1 vs. uniprot
Match: A0A6H5KJ52_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ52_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 1.200e-25
Identity = 52/131 (39.69%), Postives = 82/131 (62.60%), Query Frame = 1
Query:    4 CCVDMRPFSMAHRAGFQYFVGGLSPAYVTETIHKSTLSNILDALAADVRANLITKLKDHVDSCKKLGWGGPFFGVQSDLTSTHGTEFCTLTVSFIPRGHTEMERLTLTTKAFPGTHTASDVDPWIREVSLS 396
            C ++MRP +M +  G++  +G L P YV  T+  +T ++IL  +  +    + T L+ H +SC KLG+ GPF G Q DLT+    E+ T +VS+I    T + R+ L T+AFPG+HTA+D++PWI + S +
Sbjct:  196 CAINMRPQNMRYDDGYKLHMGMLCPKYVESTMSDATFNSILSTIYTETCDAVKTGLRLHRESCVKLGYVGPFLGAQLDLTTVANEEYITFSVSYIAEAATTITRVGLATRAFPGSHTAADIEPWIEKASFT 326          
BLAST of mRNA_P-littoralis_Contig1019.2.1 vs. uniprot
Match: A0A6H5JXV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXV5_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 2.200e-25
Identity = 53/131 (40.46%), Postives = 82/131 (62.60%), Query Frame = 1
Query:    4 CCVDMRPFSMAHRAGFQYFVGGLSPAYVTETIHKSTLSNILDALAADVRANLITKLKDHVDSCKKLGWGGPFFGVQSDLTSTHGTEFCTLTVSFIPRGHTE-MERLTLTTKAFPGTHTASDVDPWIREVSL 393
            CC+++RP  M +  GF+ FVG LSP YV  T+  +T + +LDAL   V+  ++  L+   +    +G+GG F G   DLT+    E+ T TVS++ +G T+ + R+ L T+AFPG+HTA D+ PWI  ++L
Sbjct:   21 CCINLRPQQMRYDDGFKLFVGVLSPQYVDTTMASTTFNKVLDALYDRVKQAIMDDLRLLREEFLGMGYGGAFLGAHLDLTTVANEEYITFTVSYVKKGKTDDVTRVALATRAFPGSHTAEDIKPWIEALTL 151          
BLAST of mRNA_P-littoralis_Contig1019.2.1 vs. uniprot
Match: D7G031_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G031_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 6.580e-12
Identity = 51/177 (28.81%), Postives = 76/177 (42.94%), Query Frame = 1
Query:    1 MCCVD-MRPFSMAHRAGFQYFVGGLSPAY-------------------------VTETIHKS----TLSNILDALAADVRANLITKLKDHVDSCKKLGWGGPFFGVQSDLTSTHG--------------TEFCTLTVSFIPRGHTEMERLTLTTKAFPGTHTASDVDPWIREVSLSI 399
            MC +  + P S+    G + FVGGL+P Y                         VTE  + +    T + IL  L A VR  + + L+ H +SC++LGW GPF G+Q D T   G               E CT +VSF+      + RL +  + F G   +   + WIRE++  +
Sbjct:  137 MCALQTLDPGSLCSDLGHRLFVGGLAPGYGAGRRLARRRSGLAPSGSSYAASTAVTEGANGARAAGTANAILQDLCAGVRREVASALRAHSESCRRLGWSGPFVGLQVDSTGLPGGEGXXXXXXXXXXXEEVCTASVSFVSEDFGGLVRLAIGARCFRGRQMSHAKETWIRELTADL 313          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1019.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5JTB8_9PHAE7.290e-3143.08Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JGG8_9PHAE9.060e-3143.08Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ec... [more]
A0A6H5JRT6_9PHAE5.820e-3041.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVP4_9PHAE8.310e-3043.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZU3_9PHAE8.910e-3040.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQI6_9PHAE1.690e-2941.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFJ9_9PHAE6.230e-2841.73Fanconi-associated nuclease n=1 Tax=Ectocarpus sp.... [more]
A0A6H5KJ52_9PHAE1.200e-2539.69Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JXV5_9PHAE2.200e-2540.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G031_ECTSI6.580e-1228.81Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1019contigP-littoralis_Contig1019:9917..10318 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size402
Hectar predicted targeting categoryother localisation
Exons1
Cds size402
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789357.1749752-CDS-P-littoralis_Contig1019:9916..103181680789357.1749752-CDS-P-littoralis_Contig1019:9916..10318Pylaiella littoralis U1_48CDSP-littoralis_Contig1019 9917..10318 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1019.2.1prot_P-littoralis_Contig1019.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1019 9917..10318 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1019.2.1

>prot_P-littoralis_Contig1019.2.1 ID=prot_P-littoralis_Contig1019.2.1|Name=mRNA_P-littoralis_Contig1019.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=134bp
MCCVDMRPFSMAHRAGFQYFVGGLSPAYVTETIHKSTLSNILDALAADVR
ANLITKLKDHVDSCKKLGWGGPFFGVQSDLTSTHGTEFCTLTVSFIPRGH
TEMERLTLTTKAFPGTHTASDVDPWIREVSLSI*
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mRNA from alignment at P-littoralis_Contig1019:9917..10318-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1019.2.1 ID=mRNA_P-littoralis_Contig1019.2.1|Name=mRNA_P-littoralis_Contig1019.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=402bp|location=Sequence derived from alignment at P-littoralis_Contig1019:9917..10318- (Pylaiella littoralis U1_48)
ATGTGCTGCGTCGACATGCGGCCGTTCTCGATGGCGCATCGGGCTGGGTT CCAGTACTTCGTCGGCGGCTTGAGCCCGGCGTACGTAACGGAGACGATAC ACAAGAGCACACTTTCAAACATTTTGGATGCCTTGGCCGCCGATGTTCGC GCCAACCTCATCACGAAGCTGAAGGACCACGTAGATTCCTGCAAGAAACT CGGGTGGGGCGGGCCCTTCTTTGGCGTGCAGTCGGACCTAACCAGTACGC ACGGCACCGAGTTCTGCACTCTCACCGTTTCCTTCATCCCGCGGGGTCAC ACGGAGATGGAGCGACTGACGCTGACGACAAAGGCGTTCCCGGGTACGCA CACGGCAAGCGATGTGGACCCGTGGATCCGTGAGGTGAGTCTCTCTATTT AG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1019:9917..10318-

>mRNA_P-littoralis_Contig1019.2.1 ID=mRNA_P-littoralis_Contig1019.2.1|Name=mRNA_P-littoralis_Contig1019.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=402bp|location=Sequence derived from alignment at P-littoralis_Contig1019:9917..10318- (Pylaiella littoralis U1_48)
ATGTGCTGCGTCGACATGCGGCCGTTCTCGATGGCGCATCGGGCTGGGTT
CCAGTACTTCGTCGGCGGCTTGAGCCCGGCGTACGTAACGGAGACGATAC
ACAAGAGCACACTTTCAAACATTTTGGATGCCTTGGCCGCCGATGTTCGC
GCCAACCTCATCACGAAGCTGAAGGACCACGTAGATTCCTGCAAGAAACT
CGGGTGGGGCGGGCCCTTCTTTGGCGTGCAGTCGGACCTAACCAGTACGC
ACGGCACCGAGTTCTGCACTCTCACCGTTTCCTTCATCCCGCGGGGTCAC
ACGGAGATGGAGCGACTGACGCTGACGACAAAGGCGTTCCCGGGTACGCA
CACGGCAAGCGATGTGGACCCGTGGATCCGTGAGGTGAGTCTCTCTATTT
AG
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