mRNA_P-littoralis_Contig153.15.6 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig153.15.6
Unique NamemRNA_P-littoralis_Contig153.15.6
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig153.15.6 vs. uniprot
Match: A0A6H5KRG9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRG9_9PHAE)

HSP 1 Score: 168 bits (425), Expect = 6.860e-48
Identity = 99/190 (52.11%), Postives = 121/190 (63.68%), Query Frame = 3 
Query:  186 VEDNQLEVGCLHVGLLAVRNMKQIKQGGMGGLFGLTPQHKPYCKITLGKHEFTSGVGARTTAGHAWNREQMFFPVKVPISCVVGVSEQWHETARSKSSDSRESYLNRQGGGKGTTGAPGCTSSGWRRDQATVGAKSXXXXXXXXXXXXXXXXXXXXCGSSLSRATAATNEAAAHDVWSQLTLRVQVYHRE 755
            VED  LEVG LHVGL+A R++K++KQGG+  + GL+PQ  PYC+ TLG++EFTSGVG RTT GH+WNREQ+FFPVKVPISCV+G S Q + TA S S  S     NR+ G KG   A   T  G  +     G+ S                    CGSSLSRA AA + AAAH VW+ L+LR QV+HRE
Sbjct:    6 VED-MLEVGSLHVGLIAARDVKRVKQGGVSDMLGLSPQASPYCRFTLGEYEFTSGVGVRTTGGHSWNREQIFFPVKVPISCVIGGSGQSYHTAGSGSDGSS---TNRRKGTKGPRKA--ATPGGQPKSGGKGGSGSVA------------------CGSSLSRAVAA-DAAAAHGVWNHLSLRAQVFHRE 170
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BLAST of mRNA_P-littoralis_Contig153.15.6 vs. uniprot
Match: D7G3T3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3T3_ECTSI)

HSP 1 Score: 164 bits (414), Expect = 4.250e-44
Identity = 94/185 (50.81%), Postives = 116/185 (62.70%), Query Frame = 3 
Query:  201 LEVGCLHVGLLAVRNMKQIKQGGMGGLFGLTPQHKPYCKITLGKHEFTSGVGARTTAGHAWNREQMFFPVKVPISCVVGVSEQWHETARSKSSDSRESYLNRQGGGKGTTGAPGCTSSGWRRDQATVGAKSXXXXXXXXXXXXXXXXXXXXCGSSLSRATAATNEAAAHDVWSQLTLRVQVYHRE 755
            L VG LHVGL+A R++K++KQGG+  + GL+PQ  PYC+ TLG++EFTSGVG RTT GH+WNREQ++FPVKVPISCVVG S Q + TA S S  S     N +GG KG   A   T  G  +     G+ S                    C SSLSRA A  + AAAH VW+QL+LR QV+HRE
Sbjct:    2 LGVGSLHVGLIAARDVKRVKQGGVSDMLGLSPQASPYCRFTLGEYEFTSGVGVRTTGGHSWNREQIYFPVKVPISCVVGGSGQSYHTAGSGSDGSS---TNTRGGTKGPRKA--ATPVGQPKSGGEGGSGSVA------------------CRSSLSRAVANADAAAAHCVWNQLSLRAQVFHRE 163
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig153.15.6 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KRG9_9PHAE6.860e-4852.11Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7G3T3_ECTSI4.250e-4450.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig153contigP-littoralis_Contig153:57149..62614 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size920
Hectar predicted targeting categoryother localisation
Exons4
Cds size747
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789731.2602599-CDS-P-littoralis_Contig153:57148..572921680789731.2602599-CDS-P-littoralis_Contig153:57148..57292Pylaiella littoralis U1_48CDSP-littoralis_Contig153 57149..57292 -
1680789731.2740312-CDS-P-littoralis_Contig153:58188..585511680789731.2740312-CDS-P-littoralis_Contig153:58188..58551Pylaiella littoralis U1_48CDSP-littoralis_Contig153 58189..58551 -
1680789731.2848086-CDS-P-littoralis_Contig153:59140..592241680789731.2848086-CDS-P-littoralis_Contig153:59140..59224Pylaiella littoralis U1_48CDSP-littoralis_Contig153 59141..59224 -
1680789731.296858-CDS-P-littoralis_Contig153:62285..624411680789731.296858-CDS-P-littoralis_Contig153:62285..62441Pylaiella littoralis U1_48CDSP-littoralis_Contig153 62286..62441 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789731.3059828-UTR-P-littoralis_Contig153:62441..626141680789731.3059828-UTR-P-littoralis_Contig153:62441..62614Pylaiella littoralis U1_48UTRP-littoralis_Contig153 62442..62614 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig153.15.6prot_P-littoralis_Contig153.15.6Pylaiella littoralis U1_48polypeptideP-littoralis_Contig153 57149..62441 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig153.15.6

>prot_P-littoralis_Contig153.15.6 ID=prot_P-littoralis_Contig153.15.6|Name=mRNA_P-littoralis_Contig153.15.6|organism=Pylaiella littoralis U1_48|type=polypeptide|length=249bp
MPTAVEDNQLEVGCLHVGLLAVRNMKQIKQGGMGGLFGLTPQHKPYCKIT
LGKHEFTSGVGARTTAGHAWNREQMFFPVKVPISCVVGVSEQWHETARSK
SSDSRESYLNRQGGGKGTTGAPGCTSSGWRRDQATVGAKSGGRSGGDDHG
GDGGGAGGVACGSSLSRATAATNEAAAHDVWSQLTLRVQVYHREDSAVAA
KTGGGGGGGGGGGGSSSSGITSAEIRTATPGEEDDDNNNNNSNSNNDND
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mRNA from alignment at P-littoralis_Contig153:57149..62614-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig153.15.6 ID=mRNA_P-littoralis_Contig153.15.6|Name=mRNA_P-littoralis_Contig153.15.6|organism=Pylaiella littoralis U1_48|type=mRNA|length=5466bp|location=Sequence derived from alignment at P-littoralis_Contig153:57149..62614- (Pylaiella littoralis U1_48)
CTAAATAAAGCTCACCCGCCGCGTTTGCTCCTGCAGTATCGGTGGTGCAG
TCCCCGCAACATCCCTGTTGCAGCTTGTATTTGGTCTTTGATTGCTCTGC
GCCTTTTCAACACTTCTACACCTCTTGTGGTGGTGCCTCAAAAACTGGCT
CTCCCTCTGTGCAGCTGTGACGCATGCCTACAGCAGTTGAAGACAACCAG
CTGGAGGTGGGCTGCCTCCATGTGGGCCTGCTTGCTGTAAGGAACATGAA
ACAGATCAAGCAAGGAGGAATGGGTGGCTTGTTCGGGCTGACTCCACAAC
ATAAGCCATACTGCAAGATCACGCTGGGGGTGAGCTGCTATTAGAGAGGA
AAGGAAAGGCACGCAGTTTCGTGGTCGTTGTGTTTTTCCCTCTTTGAACA
CGTTGTCTGTTGCTCCGCGCTGGTGCTCGGCTTATACAATTAACACAATC
CGCCTAACAATACTGAAATCGATCAAGTCCCAAACGAAATCTCTTGAAGC
ACGCTGCTGCTGTGTTGCTATACCTTTACTGGCGCTGCAGCACTCTCACT
TCAAGCCTCTCTCTCAGCTGCTCTAATATCATCAACACTTGTGACTCTTC
TATCGTGTGCTCCCGTATTCTGATTTTCTCGTCCCTCTTTTTAGGAAATT
TCCAAGACGCTCCACAAACCACGGATTCATAAATACTTCGAAACCTCCAG
TTCTGCCCTTAGAAAGGCAGTTTGCTAGAGGGTCATAAATTGATTTGTGT
TCTCGTTGTCTTTTTCCCGCTTTGAAGACCTTGTCATTTCCTCTGCGCTG
GTGCTCTGCTTATACAGCTAGCTGCTGGCAAGGGGATAACGCACACTGTA
GAGAATGACACCATCCGGCGTAACAATACTCTGTAGTGCGTTCATGCCCT
CAGGCCCTGTATTGACGATAGTCGGAAAATCATTATTGGAATTAATCATA
ATCATAGAAGTCTCTGATTGGTCAAGCTTTTACAACCTTCCGACGACGCC
AATGATTTTCTGGACATCGCCGGCAGACCAAAGAAGTCTAAAAATAGTTA
ATTGGCAGAAAATCATAAATCATTATTCGAGGTCTTAACCCGATCGAAGG
CTTTCTGAACGATGTGCCTCGCGCACCATAGACAGGCGGACAGGCAGGCC
AGACCAAATACTACCGAGGTAACCAGCCGCAGTGCCACAGAACATGACAT
AGAGGTTTGCCGTTGCACTAGGCAAGCCAACGTTAGCACCACACATGACA
GCGTAACAAATAAACACAGCAGTTTGCATGATTGATGATGGCGACCCATT
TCATTTTACACAACACACACCTCAGCACACACGATGCACACAGGCAGGTC
ACAGGTCACGAGCACTAAGCCGCCTCTCACAGCCCAAGGCAGACAGACAT
ATGACACAACAGCAGTCTTGAGTGCATGAGCCAATGCACATACACACACA
CCGCACACGTACACAAACGGGGTGTCTCTCAGCATCAAGGCTTGGTGCAC
AGAGCCCACGACCTTGCCTTTGCATGCGAGAGGACGCACATGATACGTCG
AAGTACTGCTGTACTGCTGTACGGAGTACTTTGTACAGCAGTGTTTTTTA
TTGTTCTGTTTTACCCGTCGTGTCGTCATCATCAGAGGTTTGCATACTGC
TGGCGTTTACAGGCCTTCAAACAGCCTTTTTCAGCTCTTCCGTTAATATG
GCTCGAAGGGTTTTTCGGAAAATCATACTATGATAATGATTTCAATAATG
ATTTCCCGACTTTCGTTAACACAGGGCCTTAGAAAGTTTGCTAGAGGATC
ATAAATTCATTTGGGTTAGGGTTGTAAACATGCTGTAGACTACGTATGGT
ACGTGCAGGAGTACAGGAAACTGCATGGACAGCCTCGTTGTTTGCCTATG
ATACAGATGTACATGCAACATACCGAGAAGCGGATGAAGGTAGAGATGAA
AAACACTTGTCAGCGTTCGTTGGGTCAGATGTAGGCTTGCCATCGGGCAA
TGCTCACAAATTCATTTTCTGGAAAGGGCGCTGCCATACTGTACATAAAT
CGCGGGCGTTGAACTCTGAAACTATCACGTACACAAGGTAGCAGGGGGAT
AACATCTCCGGCGACCCGGAACACGAGCCAACTTGACACGTCACACTTAT
CACAAAACTGATACAGTAAGGCGTTCCCTAAAGACGTAAACATGGACCCC
GCACTGCGTATGCCGTGTTTCACACATTCATTATTGTGGTCGTGGCGCAT
GGGGCAGACTGGGTGTAAATGCGCCCTGTTGTTTGTCGATATAGGGAGGG
GACAAAGAAGGCGCGTAAGGTGATCATGGGGGGGCTTTACTAGGGCGTAG
GGCGACCAGATAGCCAAATCAAAAATTTGCTTTGCCATGAACACGACGTG
TAATAGGGGAGTCAAAAGACGACACAACCTGTGATCATGGGGGGCCGTTG
CTGTTTGTACACGCAAATCCGATCACCGGTTGTGTCGTCTTTTGACTCCT
CTATTACACGTCGTATTCATGGCAAAGCAAATTTGCAGTGCGAAGAAGGG
ATAAGACCACTATGATTGTGGCTACACGTAGTTCTCGCTTCTCCAAAATA
CTACACCCCCTACCCAATTCGCATGCCAGCGACAGCTCGATGCAGGGATT
AGAGTGCACGTACGGGTTTGAGGTAGTGACGAACGTCTTCGGGTCTTATC
GTGGACTTTATCGGCACGGACTGCGAGGTTTTCACAATCCCTTGATACGT
GAACAATATGTGACATGTAGGTAGGGGGGATGTGGGCTCACACTGCCTGC
GGCTGTGGAAGGGGCGTTCGCGGGTAACATCATACCATGCGGAACACATT
GGGAAGGTAGGCCTTCCGACAGGAGAGTGCGAAATCTTTGTCCGTGTCTT
CTGCTGCAGCATCCGGCCTTCGGAGTGTTTGGATATTCCTTCGTCAACAG
CTTGCTCTTGATGCTACAGTTTAATGCTTGGACCAAATTTCGAATTTCTA
ACATTGAAAATTGGCCGGGGTAAACGGTTTTCCGAAAGGAGATATAATAG
GTTCACAAGGCGTGTTTTTAAAACGCCTGCTGCGGCGGTCTAACGATTGC
TGCTGCTGTCTGAGTTCCCGCTTATGTCACAGCAGACGCCTCCAGGTGTT
GTTGTTTGCGCTTCTGTAGGGTTACCTCGAGTACTAGGCTGACCACGTAC
AAACGTGTATGGTCATGTTTTGCCACCGTTCCCTTTGATACGGCAACACG
CCCTAATCCAGGTTCTCACGAAGTCAACGTCCTACAAGGCAGCATCTACA
TGCACATTTCTCTACTACCCCCGTTTTCTAGACCCGTATTTCACCAGCCG
GATGCATGATATCTGCCTTGCCTGCGTGTTGCAAACACAGAAACATGAGT
TCACGAGCGGTGTGGGAGCACGGACGACCGCCGGGCATGCCTGGAACAGA
GAACAGATGTTCTTTCCCGTCAAGGTACTGTTTTTGCATATTGGAATCAG
CCAGTGCACTTCTTACCCTGCTATTTACCTTCTACAGCTTACCGCCGTCG
AAACATGGACCCTGTACGAGGCCACGCGACAGAGGCCCTTTCGTGGGAAA
CGGACCGCTGTTTCAGACGGAATTTACGTTTCAGCTGGAGCGCTTGTGGT
CGTCTCTCAAGTTCATGTACAGTACAAGTAGTGTAAATGGGCGGGAAAAA
CTGAAAATGAATCCCACGGCGAGTAAGTCGCTTTTTTTTGGGTGTCACTT
TACTGTATGAGGTTCCGTGAGTACCATGAAAGAGCTCATGCTCGTACAGC
ACCCAGTTCTTATTTATCATTTAGGCTTGGTTTTTCTGCAACGGGTACGA
TACGAGAGTGGGAACAGGTCTAGAAAAATCGAGATCTCCACTTTGAAAGT
CAACGCCACTCATTCGTTCGTTCGTGCGTTCTTTCGAGGAATCATCGACC
TTGAAAAGCGACTGCGTCACTGCGGCGGTACGTGAAACCGACCACTTTGA
ACGGCGTGGCCGGTCACTTGTTGTCCTATCACCCGCTTCCTCTTGACCAC
CATCAACGTCCAGGTGCCCATTTCGTGCGTGGTAGGAGTCTCCGAGCAGT
GGCACGAGACTGCGCGAAGTAAAAGCAGCGACAGTCGCGAATCGTACCTA
AATCGACAAGGAGGCGGGAAAGGGACAACAGGCGCGCCGGGTTGCACTAG
TTCAGGGTGGAGAAGAGACCAGGCGACAGTAGGAGCCAAATCGGGCGGCC
GCAGCGGCGGCGATGACCACGGTGGTGATGGTGGTGGTGCAGGTGGTGTG
GCGTGCGGCTCGAGTCTGTCGCGGGCGACCGCCGCCACGAACGAGGCCGC
TGCCCACGATGTGTGGAGCCAGCTGACGCTGAGAGTTCAAGTGTATCATC
GGGAGGATAGTGCTGTAGCTGCAAAGGTGTGTGCAACAGCAGTGTATGCT
ACGGAGCGGTTTGGCAACGCTGATTTTCGACGCAAAAAGTCGCTTCCCGT
GACATTCGCTTGAGCTTCACCAGTACACGGAAAAGCACCTCTTGGGAGTT
AGTTCCTCGTGGGCCGGAGGGCGCAGAGCGTGTTCAATCGTTGCCTGATG
TGGCATGTGGACCATCGACCACCCATCTGAAACGAAGCTGAGCATCCTTG
TGGAGTATCACTGGGGAGGAAGGGGGGGAGGAATATTCTCGAGCGTGCCC
CGAAACTCTTGGTACTTTGCAGCGTCACCATTTGCGCTATTAAATTATTC
TTGATGCCATGAAGTGTTACCATTACTGTCTGCTTGGCTTTCACTTCTTC
ATTCCCATCTTGAAGTGGGGGGCAAGCTTCGTGGGTGGGTTGACTATTTG
CACCTTTTGTGTGACAGCGAAAGTCGTGTCTCTCAAATGGTCATATCAGT
ACGTACAGAGTTTGGAGGAATCGCTTCACAGATACAGAAAGGCTTCGAAA
GTGAAGATACCAACAAATTGAGGGTAGGCCCTTACAAATACTAGGGTGCC
AGGTTCATAACTCATTTGGAAGAAGACAGACAAAATAATGTCTGCTGCGG
TTTTTGGCGGTCAAAAGTCAGAATTACGGACCAAAGTCCCCATTCCGCCC
GCCAAGCGCTTAGCCCGTGGTTTGCCGTGACGTAACGGCAACAACACAAC
GCATGAGAGTGAACAATACGCAGCAGGCAGACAGCAACGACAGCGGCAGA
TGAGCGTTGTCAGCTCTAACGTAGACATCAACATGACGCCTCTGTGGCTG
TCCAAACTGTTTCCCCCGCCTCCTCCCCCGCCTCGCCCCCGCCGATCCCG
CGCGCGAAAATAATGACAAAAGACTGGCGGCGGCGGTGGCGGCGGCGGCG
GCGGCGGAGGGAGCAGCAGCAGCGGCATCACTTCGGCCGAAATTCGCACT
GCAACTCCCGGCGAAGAAGACGACGACAACAACAACAACAACAGCAACAG
CAATAACGATAACGAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig153:57149..62614-

>mRNA_P-littoralis_Contig153.15.6 ID=mRNA_P-littoralis_Contig153.15.6|Name=mRNA_P-littoralis_Contig153.15.6|organism=Pylaiella littoralis U1_48|type=CDS|length=747bp|location=Sequence derived from alignment at P-littoralis_Contig153:57149..62614- (Pylaiella littoralis U1_48)
ATGCCTACAGCAGTTGAAGACAACCAGCTGGAGGTGGGCTGCCTCCATGT
GGGCCTGCTTGCTGTAAGGAACATGAAACAGATCAAGCAAGGAGGAATGG
GTGGCTTGTTCGGGCTGACTCCACAACATAAGCCATACTGCAAGATCACG
CTGGGGAAACATGAGTTCACGAGCGGTGTGGGAGCACGGACGACCGCCGG
GCATGCCTGGAACAGAGAACAGATGTTCTTTCCCGTCAAGGTGCCCATTT
CGTGCGTGGTAGGAGTCTCCGAGCAGTGGCACGAGACTGCGCGAAGTAAA
AGCAGCGACAGTCGCGAATCGTACCTAAATCGACAAGGAGGCGGGAAAGG
GACAACAGGCGCGCCGGGTTGCACTAGTTCAGGGTGGAGAAGAGACCAGG
CGACAGTAGGAGCCAAATCGGGCGGCCGCAGCGGCGGCGATGACCACGGT
GGTGATGGTGGTGGTGCAGGTGGTGTGGCGTGCGGCTCGAGTCTGTCGCG
GGCGACCGCCGCCACGAACGAGGCCGCTGCCCACGATGTGTGGAGCCAGC
TGACGCTGAGAGTTCAAGTGTATCATCGGGAGGATAGTGCTGTAGCTGCA
AAGACTGGCGGCGGCGGTGGCGGCGGCGGCGGCGGCGGAGGGAGCAGCAG
CAGCGGCATCACTTCGGCCGAAATTCGCACTGCAACTCCCGGCGAAGAAG
ACGACGACAACAACAACAACAACAGCAACAGCAATAACGATAACGAC
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