mRNA_P-littoralis_Contig153.1.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig153.1.2
Unique NamemRNA_P-littoralis_Contig153.1.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig153.1.2 vs. uniprot
Match: A0A6H5KDE7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDE7_9PHAE)

HSP 1 Score: 237 bits (605), Expect = 1.190e-67
Identity = 137/244 (56.15%), Postives = 167/244 (68.44%), Query Frame = 1 
Query:  256 SGAIPWEEYEDDEDVLDESHLEGRSRMGAAVRALSRARAETDASDLAENNCGADIRRQGISIDMRIEATPLQEFDHPALTPVVAALHGYAASGGDTVFLERGYELARAVAASKHDLGVAVDACRLALAVGYVHTLIKGAPSMANTFALKYSLPKLAHSLSQFWSCSPFSAGEAEAGWEECVASLLEVTSSVALMTEEENILAVLDANVYGGVAEAIGLYVLHRPHALQRYHDVGSVCLRRHSYL 987
            S    WE  EDD  V ++ H   RS  GA+           D   L      + IRRQ  S +   +  PL+EFDHPAL   +AALHGYAAS GDTVFLE+ YELARAVA SKH LGV+ DACR+ LAVGYVH LIKGAP +A+ FA ++SLPKLA SL  +WS SP    + EA WEECV+SLLEVTSS+ALMT+E +I  VLD + +G VAEA+GLY++ RP+ALQ+Y DVGS CLR H++L
Sbjct:  110 SSVASWE-GEDDGFVFEDRH---RSGAGASTVDFI-----DDTLLLQLEQRSSAIRRQQQSCNEGSDTNPLEEFDHPALQGAIAALHGYAASDGDTVFLEKAYELARAVAGSKHTLGVSFDACRVVLAVGYVHILIKGAPDLADKFAHQHSLPKLAQSLKPYWSRSPSPTPDEEAEWEECVSSLLEVTSSIALMTDERDIWTVLDRDPFGEVAEAMGLYLVRRPNALQQYQDVGSACLR-HNFL 343
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BLAST of mRNA_P-littoralis_Contig153.1.2 vs. uniprot
Match: D7G8S7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8S7_ECTSI)

HSP 1 Score: 233 bits (593), Expect = 3.680e-67
Identity = 133/242 (54.96%), Postives = 160/242 (66.12%), Query Frame = 1 
Query:  256 SGAIPWEEYEDDEDVLDESHLEGRSRMGAAVRALSRARAETDASDLAENNCGADIRRQGISI-DMRIEATPLQEFDHPALTPVVAALHGYAASGGDTVFLERGYELARAVAASKHDLGVAVDACRLALAVGYVHTLIKGAPSMANTFALKYSLPKLAHSLSQFWSCSPFSAGEAEAGWEECVASLLEVTSSVALMTEEENILAVLDANVYGGVAEAIGLYVLHRPHALQRYHDVGSVCLRRH 978
            S    WEE +D          E R R+GA  R ++   +  D   L      + IR+Q     + R +  PL+EFDHPAL   VAALHGYAAS GDT FLE+ YELAR VA SKH LGV+ DACR+ LAVGYVH LIKGAP MAN FA ++SLPKLA SL  +WS SP    + EA WEECV+SLLEVTSS+ALMT+E +I  VLD + +G VAEA+GLY+  RP+ LQ Y DVGS CLR +
Sbjct:   16 SSVASWEEGDDG------LVFEDRHRLGAGARTVN---SIDDTLLLQLEQRSSSIRQQQQQFCNERSDTNPLEEFDHPALQGAVAALHGYAASDGDTSFLEKAYELARTVAGSKHTLGVSFDACRVVLAVGYVHILIKGAPDMANNFAHQHSLPKLAQSLKPYWSRSPSPTPDEEAEWEECVSSLLEVTSSIALMTDEGDIWTVLDRDPFGEVAEAMGLYLARRPNVLQHYQDVGSACLRNN 248
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig153.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KDE7_9PHAE1.190e-6756.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G8S7_ECTSI3.680e-6754.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig153contigP-littoralis_Contig153:579..4689 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2380
Hectar predicted targeting categorymitochondrion
Exons5
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-22_002840.1
Cds size960
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig153.1.2prot_P-littoralis_Contig153.1.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig153 1933..4623 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789730.5023668-UTR-P-littoralis_Contig153:578..19321680789730.5023668-UTR-P-littoralis_Contig153:578..1932Pylaiella littoralis U1_48UTRP-littoralis_Contig153 579..1932 -
1680789730.5647383-UTR-P-littoralis_Contig153:4623..46891680789730.5647383-UTR-P-littoralis_Contig153:4623..4689Pylaiella littoralis U1_48UTRP-littoralis_Contig153 4624..4689 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789730.5122118-CDS-P-littoralis_Contig153:1932..19791680789730.5122118-CDS-P-littoralis_Contig153:1932..1979Pylaiella littoralis U1_48CDSP-littoralis_Contig153 1933..1979 -
1680789730.523788-CDS-P-littoralis_Contig153:2412..24941680789730.523788-CDS-P-littoralis_Contig153:2412..2494Pylaiella littoralis U1_48CDSP-littoralis_Contig153 2413..2494 -
1680789730.5369089-CDS-P-littoralis_Contig153:2777..30301680789730.5369089-CDS-P-littoralis_Contig153:2777..3030Pylaiella littoralis U1_48CDSP-littoralis_Contig153 2778..3030 -
1680789730.5474005-CDS-P-littoralis_Contig153:3418..36131680789730.5474005-CDS-P-littoralis_Contig153:3418..3613Pylaiella littoralis U1_48CDSP-littoralis_Contig153 3419..3613 -
1680789730.5561604-CDS-P-littoralis_Contig153:4240..46231680789730.5561604-CDS-P-littoralis_Contig153:4240..4623Pylaiella littoralis U1_48CDSP-littoralis_Contig153 4241..4623 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig153.1.2

>prot_P-littoralis_Contig153.1.2 ID=prot_P-littoralis_Contig153.1.2|Name=mRNA_P-littoralis_Contig153.1.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=320bp
MFLRHALRCTSSSSAAAAAAAPLKHEGCDLSGSPLSLRAAMRNGNNSMSS
AAATASEPSNATSSGAIPWEEYEDDEDVLDESHLEGRSRMGAAVRALSRA
RAETDASDLAENNCGADIRRQGISIDMRIEATPLQEFDHPALTPVVAALH
GYAASGGDTVFLERGYELARAVAASKHDLGVAVDACRLALAVGYVHTLIK
GAPSMANTFALKYSLPKLAHSLSQFWSCSPFSAGEAEAGWEECVASLLEV
TSSVALMTEEENILAVLDANVYGGVAEAIGLYVLHRPHALQRYHDVGSVC
LRRHSYLVVPYVLCFVITL*
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mRNA from alignment at P-littoralis_Contig153:579..4689-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig153.1.2 ID=mRNA_P-littoralis_Contig153.1.2|Name=mRNA_P-littoralis_Contig153.1.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=4111bp|location=Sequence derived from alignment at P-littoralis_Contig153:579..4689- (Pylaiella littoralis U1_48)
AGCAGCAGCAGCACCGGCACCAGTTCCAGCAGCGCGTTGCCCACATCGAC
AGTAGAGAGAAAGATCATGTTCCTCCGGCACGCGTTGCGCTGCACATCAT
CATCATCAGCAGCAGCAGCCGCAGCAGCACCTTTGAAACACGAAGGTTGC
GACCTGTCGGGTTCCCCACTCTCTCTCCGGGCTGCGATGAGAAACGGCAA
CAACAGCATGTCTTCCGCAGCAGCCACAGCCAGCGAGCCCTCCAATGCCA
CAAGCTCCGGTGCGATTCCGTGGGAAGAATACGAGGACGACGAGGACGTA
CTCGACGAGTCACACCTCGAGGGACGTTCAAGGATGGGAGCAGCAGTTAG
AGCTCTCTCCCGAGCTCGCGCAGAGACTGACGCATCGGACCTTGCTGAGA
ACAACTGCGGCGCGGATATCCGACGGCAGGGTATCTCTATTGATATGCGG
TGAGTGGAATGCTGTCAAATCCCTCGTCATCCCTTTCCTGTTTTCACGCG
TTCTCCGAATGTTTGTCTCCTCCCGCGTAAGCACGGTGGGCGTGTGCGGG
TGGTTACTGCTGGAATTGCCTACTAGTCATCATCTGTCTTGTGATTTGCC
ACTTGTTCGATCTTCTCATGATATAGTTGTACGAAGCATTGTACGACGTA
CGAAGTATTTCGAAGTATTAAAGTACACAGATTTAATTTATTTGAATTCA
AACTTGTTTCTCATGAACTGACACGTGGCCGATACTTGAAATGCTTACTC
GGAGTACTCATCAGTAATGTATGGGGTACATTTCACGGGCTCGACACATG
AGGTACGATCCAAAAACAGGCTGTCAGGCCGATCCGACCAGACAGCAGAG
CACTTTTAAAGTCTTGTCGCGCGCTCACGCTGAAGATCTTGTCCGTGTGG
CGATGTGTACGATGGCGGCCGGCCTAACAGAACATCGTTGTTCCACCCCT
TCGCCTCGCCACCCCCAACCTCCTTCGGCGCTCCACTTCTGGCACGACGT
ACACACGACACCTACGTACACACGGGGACTTTTTCTCTCACCCGCATACG
GTGCGTTTGTTACTCATGCACAACAGGATAGAAGCGACGCCGCTTCAGGA
GTTTGACCACCCGGCGCTCACACCCGTCGTTGCAGCCCTTCACGGGTACG
CAGCCAGTGGGGGTGACACTGTTTTTCTCGAAAGGGGTTACGAACTGGCG
AGGGCGGTGGCGGCATCGAAGCACGACCTTGGCGTGGCCGTCGACGCATG
CCGCTTGGCTTTGGCAGTGGGGTGAGAGCATGTGCAGATGTGAAGGGTAA
ACAGCTCCTGGAGCATACACAACACCACCGGCCTTTGTTTACCGGTTCGG
ATTATTCGTCGGGTGAAGGCTTGCCGTGGGACAAAAACGCCAAATCGTTG
CCGGAAACCGGCAGTTGTTTTGCCTCAAGTTACCTGCGGTAGGTTGGTTC
TCCAAAATTCGTTCAAAGGGGCAGGTAGGTGAAGGTTTCACACCGACTGG
TGCTGCCACACAGACTTGTTGTTCCGGCCGTAGGTGTTGCCAACATCAAT
AGCACCTACAGCTGTAGTTTTTATGACGGGATGGTCGTGGACTTTTTTGT
CGTTCCGGCCAACACGTCGTTGCCTCACACACACACACACACCCGGCCCG
ACCCCGCAGGTACGTGCACACGCTCATCAAGGGCGCACCCAGCATGGCTA
ACACCTTCGCCCTGAAGTACAGCCTTCCCAAGCTGGCGCACTCGCTGTCG
CAGTTCTGGTCTTGCTCTCCCTTCTCCGCCGGCGAGGCGGAAGCGGGATG
GGAAGAGTGCGTGGCTTCGCTTCTTGAGGTTACCTCCAGCGTTGCCCTCA
TGACGGAAGAGGAAAATATCTTGGCCGTTCTGGACGCCAACGTCTACGGG
GGTGTGGCAGAGGTGAGGATACGACCGTCGTGGAGCCCCTTCCTCCTTCC
TTGTTCCACTTCTTGTCCCTCGGTGTTTTCCTGGACGACTGTCTTCAATG
ATTTCTTGCGTCGTGACCGACACGCACGGTGTGTGCCTCGTTTCTACCAT
CTCTTGAAATGGCGTCTGGGTGTTGACGGTGGGAGGGTGCGACCACCGAC
AGCACTCGCAACTTATCGTTCTGAACAGCTTTCCTCAACCGCACATCGTG
CCTCACCTCCCATACCCACCGTTCCACGACCACTGGTGATCACAGGCGAT
CGGGTTATACGTTCTGCACAGACCACATGCTCTCCAGCGGTATCACGATG
TCGGAAGCGTGTGCTTGCGACGTCACTTGTTGTCCCTTGACTCCGTGAGT
GCCGTTTTGTGGAGTCAGATAGGCGGTAGCCATGCTTTCTATTCGTTCAC
AACCAGTGAAAGGCGAGACTCGTGCAGTGGTCTTCGCAACGCGAAAAGTA
GAGCATCTTTGAAGACGACTCGGTCTGAGATCCTCCAGGTGGGGTTGACT
TTCGACACCAGGAGGTGGATTCTGCACGGTTTTGCATGATATCGTCGACA
GTCGAATGCACCCCACGAACGTCTTGCTTGCCTCTCTGAACTCCACCGTT
TGAACGCCGTGTCGTATTTACCTGTGTCGCGTTGCAGGCACGTGATTCGA
CAGATATGGAGTAACTTCGTCAGCATCACCATCGCAAAGAAAAAAACGGC
GACGCGCGAAGTATCAACAGACGGTGGTCCCATTGGCCCGTTTCTTCGGT
GTTCACGATCCTTATTTGGTTGTTCCATACGTGCTGTGCTTCGTAATTAC
GCTCTAGCCTCCAGCTTGAGACGTACTTCGTTATTGAAACAAAGTGCCTA
ATTAGGGCGTGTAGAACGCCAGAGACTCACCCAGGACACTTGTTTCTTCC
TGCGCTGTTCGTGTTTCGGCTGTCGGAGACACTCTCTTCATAGTAACCCC
CAATTTTGACCATTTTTTGTTTTTGTAGGACTTCGACGTTTCTCCCTGTG
CTGTTCGTGTTTCGGCTGTCAGAGACACTCTCTTCATAGTAACCCCCAAT
TTTGACCAATTTTTGTTGTTGATACTGAGAAGTTGTTCCAAGGTGGCATG
TTGGTCAGGTAGAACGTGGTTAATGAGAGATTCGCGCCAAGACTCGTTTC
TATTTTTGACAGATATTGTTGTATGTAGCGCTGGTCCCCCTCCAGCCATT
TGTGACCAGCGAACTTCTGCTTCAGGGGGGTGGCGGGAGCAACGTATGTT
TGATAGATTTTGTGTAGGTGGTGCTTACACAGCTAAATGTTCGTTCGGAA
AAGGCACCGTTTTTTTGGAAGGCCTCTAGCACGTTTTTTGTTGCGGACCA
ATGGGTCAAAGCGCACCGCCGGACTGCCGTTGAGCGATGTATATAAATAA
ATTTTACGCAATGATGCCGTGTGCCCTTGCAGTCCCCCCCCTTTTCCTGG
AACGGGAAATGAGTGCCGACTTTCGTCCGTCAAGACTGTTCCTTGAAACT
GACGCCGAGATTTTTTAACCCTGTATTGATGTGGCGCCGGTAAGCACGCT
TGCTCCCGTCTGCGCCGCGCCTCATCGTGCTGTATACCATGCCCGTCGTA
CGCGTTAGCTGTAATTTTTGGTGGGTTTTCTTCGTAGCATGTGGTGTATA
TTTCGGGAGAGTTCCATTATGTAATTTTTGTGTGTCTTATTTTTCGTTAC
GTGACCAAACCTGCGGGGAATTGTTGAGAAAACATGCGCGCGTAAGTGTC
GCTGAACTGGTTGGGTTTCACATGTTACTGTCACTTGGATCGGTGACACC
TGGGTGAAGCCTGTGCTCATGGTTTGAGTAATGTGGTGTTGCTTTTCGTT
GATTTCGGCCTGCTCCGACTGTGGGGACATTCCACCCGCATGAGAGAAAA
AAAAATGTGCTTCAGTTGTGTCATCTCGCCCCGGTTGTTCCGTGGATAGT
CCCATAGTTGAATCTTCATATAAGACTTGTACCTCAAGTGCACAGTGGAG
TTTTTTAGGGAACTGATTGGGAAGGAACAACAAGAAAGAGCTGTTATGTG
AGAGAGCGGCGGTGATGGAGGTGACCTAAGGCAACGCCGGCAGTGAAGAA
GCATTACGAGAGCATGTTGCTGGTGATGTGGCCTTGGGCAACGCCAACAG
CAACGTGGACC
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Coding sequence (CDS) from alignment at P-littoralis_Contig153:579..4689-

>mRNA_P-littoralis_Contig153.1.2 ID=mRNA_P-littoralis_Contig153.1.2|Name=mRNA_P-littoralis_Contig153.1.2|organism=Pylaiella littoralis U1_48|type=CDS|length=960bp|location=Sequence derived from alignment at P-littoralis_Contig153:579..4689- (Pylaiella littoralis U1_48)
ATGTTCCTCCGGCACGCGTTGCGCTGCACATCATCATCATCAGCAGCAGC
AGCCGCAGCAGCACCTTTGAAACACGAAGGTTGCGACCTGTCGGGTTCCC
CACTCTCTCTCCGGGCTGCGATGAGAAACGGCAACAACAGCATGTCTTCC
GCAGCAGCCACAGCCAGCGAGCCCTCCAATGCCACAAGCTCCGGTGCGAT
TCCGTGGGAAGAATACGAGGACGACGAGGACGTACTCGACGAGTCACACC
TCGAGGGACGTTCAAGGATGGGAGCAGCAGTTAGAGCTCTCTCCCGAGCT
CGCGCAGAGACTGACGCATCGGACCTTGCTGAGAACAACTGCGGCGCGGA
TATCCGACGGCAGGGTATCTCTATTGATATGCGGATAGAAGCGACGCCGC
TTCAGGAGTTTGACCACCCGGCGCTCACACCCGTCGTTGCAGCCCTTCAC
GGGTACGCAGCCAGTGGGGGTGACACTGTTTTTCTCGAAAGGGGTTACGA
ACTGGCGAGGGCGGTGGCGGCATCGAAGCACGACCTTGGCGTGGCCGTCG
ACGCATGCCGCTTGGCTTTGGCAGTGGGGTACGTGCACACGCTCATCAAG
GGCGCACCCAGCATGGCTAACACCTTCGCCCTGAAGTACAGCCTTCCCAA
GCTGGCGCACTCGCTGTCGCAGTTCTGGTCTTGCTCTCCCTTCTCCGCCG
GCGAGGCGGAAGCGGGATGGGAAGAGTGCGTGGCTTCGCTTCTTGAGGTT
ACCTCCAGCGTTGCCCTCATGACGGAAGAGGAAAATATCTTGGCCGTTCT
GGACGCCAACGTCTACGGGGGTGTGGCAGAGGCGATCGGGTTATACGTTC
TGCACAGACCACATGCTCTCCAGCGGTATCACGATGTCGGAAGCGTGTGC
TTGCGACGTCACTCTTATTTGGTTGTTCCATACGTGCTGTGCTTCGTAAT
TACGCTCTAG
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