mRNA_P-littoralis_Contig153.74.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig153.74.1
Unique NamemRNA_P-littoralis_Contig153.74.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig153.74.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig153contigP-littoralis_Contig153:254496..255226 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size732
Hectar predicted targeting categoryother localisation
Exons1
Cds size390
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789730.4237921-UTR-P-littoralis_Contig153:254495..2548361680789730.4237921-UTR-P-littoralis_Contig153:254495..254836Pylaiella littoralis U1_48UTRP-littoralis_Contig153 254496..254836 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789730.43343-CDS-P-littoralis_Contig153:254836..2552261680789730.43343-CDS-P-littoralis_Contig153:254836..255226Pylaiella littoralis U1_48CDSP-littoralis_Contig153 254837..255226 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig153.74.1prot_P-littoralis_Contig153.74.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig153 254837..255226 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig153.74.1

>prot_P-littoralis_Contig153.74.1 ID=prot_P-littoralis_Contig153.74.1|Name=mRNA_P-littoralis_Contig153.74.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=130bp
MRERRDGGRGTQWVRQIRELTRNGLFECRRNSLSLSPALPSSVDQEESGR
ILTYCEGCSNKVQERPVSETTTSFSRFQSLDGFCIVLSLILTLAHYRRSL
ARGHKPGTYRARRKKNKNKIYSGVWTMITD
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mRNA from alignment at P-littoralis_Contig153:254496..255226+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig153.74.1 ID=mRNA_P-littoralis_Contig153.74.1|Name=mRNA_P-littoralis_Contig153.74.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=731bp|location=Sequence derived from alignment at P-littoralis_Contig153:254496..255226+ (Pylaiella littoralis U1_48)
ACGCCAGATGCGCCAGAGGATGCTCCCGAAGATGGCATGCCCGGCCGGAA
ACGATCAGCACCTTGAGCGGACAAAAGAAAATGACGGCGATGGAACACAA
AGAATTGGACACCAAGGTGTCGCGATCGAGACAGAACACACAACCTAAAT
GAATCGCAGACGACCTGGGAAGAGATGGAGGAGAGAGGGGGACTGTACCC
GGCACGTGCGATCTCGTCTACGCTAAACAAGGGGCCGTGAACTGAGAGCT
TTGATGAGTGTACGCTGGGGGGTGCCACGTCTTGATTTGTCTGCTTTACA
CCCAGAGTGCTGATAGACACCAGAGCTTTAGTCCATTTTTCATGCGAGAG
AGGCGCGATGGGGGAAGAGGAACACAGTGGGTTCGACAAATACGAGAACT
TACTCGTAACGGCTTGTTCGAATGCCGGAGAAACTCGCTCTCACTGTCAC
CTGCACTGCCATCGTCTGTCGACCAGGAAGAAAGTGGTCGTATTCTCACC
TACTGCGAAGGGTGTTCGAATAAGGTTCAAGAGCGCCCTGTTTCCGAGAC
AACGACATCATTCTCCCGGTTCCAAAGTTTAGACGGTTTTTGTATTGTTT
TGTCGTTGATTCTCACATTAGCTCACTACCGCCGCAGTCTAGCCCGTGGT
CACAAACCAGGCACATATCGTGCTAGGAGGAAAAAAAATAAAAATAAAAT
ATACTCCGGAGTATGGACTATGATCACCGAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig153:254496..255226+

>mRNA_P-littoralis_Contig153.74.1 ID=mRNA_P-littoralis_Contig153.74.1|Name=mRNA_P-littoralis_Contig153.74.1|organism=Pylaiella littoralis U1_48|type=CDS|length=390bp|location=Sequence derived from alignment at P-littoralis_Contig153:254496..255226+ (Pylaiella littoralis U1_48)
ATGCGAGAGAGGCGCGATGGGGGAAGAGGAACACAGTGGGTTCGACAAAT
ACGAGAACTTACTCGTAACGGCTTGTTCGAATGCCGGAGAAACTCGCTCT
CACTGTCACCTGCACTGCCATCGTCTGTCGACCAGGAAGAAAGTGGTCGT
ATTCTCACCTACTGCGAAGGGTGTTCGAATAAGGTTCAAGAGCGCCCTGT
TTCCGAGACAACGACATCATTCTCCCGGTTCCAAAGTTTAGACGGTTTTT
GTATTGTTTTGTCGTTGATTCTCACATTAGCTCACTACCGCCGCAGTCTA
GCCCGTGGTCACAAACCAGGCACATATCGTGCTAGGAGGAAAAAAAATAA
AAATAAAATATACTCCGGAGTATGGACTATGATCACCGAC
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