mRNA_P-littoralis_Contig153.63.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig153.63.1
Unique NamemRNA_P-littoralis_Contig153.63.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig153.63.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig153contigP-littoralis_Contig153:199867..200357 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size491
Hectar predicted targeting categoryother localisation
Exons1
Cds size312
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789730.380382-CDS-P-littoralis_Contig153:199866..2001781680789730.380382-CDS-P-littoralis_Contig153:199866..200178Pylaiella littoralis U1_48CDSP-littoralis_Contig153 199867..200178 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789730.3914623-UTR-P-littoralis_Contig153:200178..2003571680789730.3914623-UTR-P-littoralis_Contig153:200178..200357Pylaiella littoralis U1_48UTRP-littoralis_Contig153 200179..200357 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig153.63.1prot_P-littoralis_Contig153.63.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig153 199867..200178 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig153.63.1

>prot_P-littoralis_Contig153.63.1 ID=prot_P-littoralis_Contig153.63.1|Name=mRNA_P-littoralis_Contig153.63.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=104bp
MQSAMFGNNLSDIPSDIIRAVTARVGVDCLAIMRRPLHTAAAANRATTLA
QAESFVVNTQLLNTSSRICAWTEFFPEKRKKIRPCRRNLNITPRVFRAMN
KLT*
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mRNA from alignment at P-littoralis_Contig153:199867..200357-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig153.63.1 ID=mRNA_P-littoralis_Contig153.63.1|Name=mRNA_P-littoralis_Contig153.63.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=491bp|location=Sequence derived from alignment at P-littoralis_Contig153:199867..200357- (Pylaiella littoralis U1_48)
CCGGTCTGAGAATCAAAAACCAACCAAGTCGATTACGCAAGCAGCGCTTT
GTCCACACGATAAACCCCTTTTCACCCGCTGCCCTATGTCGCAAACGTTT
GTTAGGGCAAGTTGAGAAGGCTTGTGATGCTGTAGTACGAGAAATTAAGT
TTTGCCGAATGAGGTTGTGAGTTGTGCCAATGCAAAGTGCCATGTTTGGA
AACAACCTCTCCGACATACCGAGTGATATCATACGTGCTGTAACGGCGAG
GGTGGGTGTCGATTGCTTGGCCATCATGCGAAGGCCACTGCATACAGCAG
CAGCAGCGAACAGGGCGACAACACTCGCCCAAGCAGAGAGCTTTGTCGTG
AATACCCAGCTGCTGAATACCTCTTCGCGGATATGCGCTTGGACTGAGTT
CTTCCCGGAGAAGCGAAAAAAGATACGGCCATGTCGCAGAAACCTTAATA
TCACCCCCCGCGTGTTCCGCGCCATGAACAAACTCACGTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig153:199867..200357-

>mRNA_P-littoralis_Contig153.63.1 ID=mRNA_P-littoralis_Contig153.63.1|Name=mRNA_P-littoralis_Contig153.63.1|organism=Pylaiella littoralis U1_48|type=CDS|length=312bp|location=Sequence derived from alignment at P-littoralis_Contig153:199867..200357- (Pylaiella littoralis U1_48)
ATGCAAAGTGCCATGTTTGGAAACAACCTCTCCGACATACCGAGTGATAT
CATACGTGCTGTAACGGCGAGGGTGGGTGTCGATTGCTTGGCCATCATGC
GAAGGCCACTGCATACAGCAGCAGCAGCGAACAGGGCGACAACACTCGCC
CAAGCAGAGAGCTTTGTCGTGAATACCCAGCTGCTGAATACCTCTTCGCG
GATATGCGCTTGGACTGAGTTCTTCCCGGAGAAGCGAAAAAAGATACGGC
CATGTCGCAGAAACCTTAATATCACCCCCCGCGTGTTCCGCGCCATGAAC
AAACTCACGTGA
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