mRNA_P-littoralis_Contig153.26.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-littoralis_Contig153.26.1
Unique Name	mRNA_P-littoralis_Contig153.26.1
Type	mRNA
Organism	Pylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))

Homology

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BLAST of mRNA_P-littoralis_Contig153.26.1 vs. uniprot
Match: A0A6H5KTX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTX6_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 4.750e-34
Identity = 64/108 (59.26%), Postives = 83/108 (76.85%), Query Frame = 2

Query:  203 HLSGHQLVRCRGGFLAVLHETHWVGLLTPCWARESDLARFRRNILLY*TSDTCHFRQGNRSNHLSRSLVARRELSRSDGDRYLAPGFELVSYDSWMRRFSASPLPAGA 526
            ++SGHQLVR R G LAVL++THWVGL TP W RESDL  FRR+ILLY + + C  +QGNR+  ++R+  A+REL+R+ G+RYL PG +LV   +W+RRFS SPLP GA
Sbjct: 1282 YISGHQLVRGRSGALAVLYQTHWVGLTTPSWERESDLDLFRRHILLYLSREACQSKQGNRTYRVARTRAAQRELARNRGERYLPPGADLVLNATWLRRFSTSPLPVGA 1389

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BLAST of mRNA_P-littoralis_Contig153.26.1 vs. uniprot
Match: A0A6H5KDL4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDL4_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 8.570e-34
Identity = 63/111 (56.76%), Postives = 83/111 (74.77%), Query Frame = 2

Query:  203 HLSGHQLVRCRGGFLAVLHETHWVGLLTPCWARESDLARFRRNILLY*TSDTCHFRQGNRSNHLSRSLVARRELSRSDGDRYLAPGFELVSYDSWMRRFSASPLPAGASFC 535
            ++SGHQLVR R G LAVL++THWVGL TP W RESDL  FRR+ILLY + + C  ++ NR+  ++R+  A+REL+R+ G+RYL PG +LV   +W+RRFS SPLP GA  C
Sbjct:  864 YISGHQLVRGRSGVLAVLYQTHWVGLTTPSWERESDLDLFRRHILLYWSREACQSKRDNRTYRVARTRAAQRELARNRGERYLPPGADLVLNATWLRRFSTSPLPVGARLC 974

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BLAST of mRNA_P-littoralis_Contig153.26.1 vs. uniprot
Match: A0A6H5KL08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL08_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 3.760e-33
Identity = 61/108 (56.48%), Postives = 83/108 (76.85%), Query Frame = 2

Query:  203 HLSGHQLVRCRGGFLAVLHETHWVGLLTPCWARESDLARFRRNILLY*TSDTCHFRQGNRSNHLSRSLVARRELSRSDGDRYLAPGFELVSYDSWMRRFSASPLPAGA 526
            ++SGHQLVR R G LAVL+ THW+GL TP W RESDL + RR+ILLY + +    +QGNR+   +R+  A+REL+R+ G+RYL PG +LV +++W+RRFS+SPLP GA
Sbjct:  212 YISGHQLVRGRRGVLAVLYHTHWIGLATPSWERESDLEQSRRHILLYWSREISQSKQGNRAYRNTRTRAAQRELARTRGERYLPPGADLVLHETWLRRFSSSPLPVGA 319

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BLAST of mRNA_P-littoralis_Contig153.26.1 vs. uniprot
Match: A0A6H5JVY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVY6_9PHAE)

HSP 1 Score: 134 bits (336), Expect = 5.720e-33
Identity = 62/108 (57.41%), Postives = 81/108 (75.00%), Query Frame = 2

Query:  203 HLSGHQLVRCRGGFLAVLHETHWVGLLTPCWARESDLARFRRNILLY*TSDTCHFRQGNRSNHLSRSLVARRELSRSDGDRYLAPGFELVSYDSWMRRFSASPLPAGA 526
            ++SGHQLVR R G LAVL++THWVGL TP W RESDL  FRR+ILLY + + C  +QGNR+  ++R+  A+REL+R+ G+RY  PG + V   +W+RRFS SPLP GA
Sbjct: 1612 YISGHQLVRGRSGVLAVLYQTHWVGLTTPSWERESDLDLFRRHILLYWSREACQSKQGNRTYRVARTRAAQRELARNRGERYFPPGADFVLSATWLRRFSTSPLPIGA 1719

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BLAST of mRNA_P-littoralis_Contig153.26.1 vs. uniprot
Match: A0A6H5J9W8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9W8_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 1.890e-32
Identity = 61/108 (56.48%), Postives = 83/108 (76.85%), Query Frame = 2

Query:  203 HLSGHQLVRCRGGFLAVLHETHWVGLLTPCWARESDLARFRRNILLY*TSDTCHFRQGNRSNHLSRSLVARRELSRSDGDRYLAPGFELVSYDSWMRRFSASPLPAGA 526
            ++SGHQLVR R G LAVL+ THW+GL TP W RESDL + RR+ILLY + +    +QGNR+   +R+  A+REL+R+ G+RYL PG +LV +++W+RRFS+SPLP GA
Sbjct:  994 YISGHQLVRGRSGVLAVLYHTHWIGLATPSWERESDLEQSRRHILLYWSREISQSKQGNRAYRNTRTRAAQRELARTRGERYLPPGADLVLHETWLRRFSSSPLPVGA 1101

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BLAST of mRNA_P-littoralis_Contig153.26.1 vs. uniprot
Match: A0A6H5JK47_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK47_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 2.000e-32
Identity = 61/108 (56.48%), Postives = 83/108 (76.85%), Query Frame = 2

Query:  203 HLSGHQLVRCRGGFLAVLHETHWVGLLTPCWARESDLARFRRNILLY*TSDTCHFRQGNRSNHLSRSLVARRELSRSDGDRYLAPGFELVSYDSWMRRFSASPLPAGA 526
            ++SGHQLVR R G LAVL+ THW+GL TP W RESDL + RR+ILLY + +    +QGNR+   +R+  A+REL+R+ G+RYL PG +LV +++W+RRFS+SPLP GA
Sbjct: 2008 YISGHQLVRGRSGVLAVLYHTHWIGLATPSWERESDLEQSRRHILLYWSREISQSKQGNRAYRNTRTRAAQRELARTRGERYLPPGADLVLHETWLRRFSSSPLPVGA 2115

[Close]

BLAST of mRNA_P-littoralis_Contig153.26.1 vs. uniprot
Match: A0A6H5KZ08_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ08_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 2.920e-31
Identity = 59/108 (54.63%), Postives = 80/108 (74.07%), Query Frame = 2

Query:  203 HLSGHQLVRCRGGFLAVLHETHWVGLLTPCWARESDLARFRRNILLY*TSDTCHFRQGNRSNHLSRSLVARRELSRSDGDRYLAPGFELVSYDSWMRRFSASPLPAGA 526
            ++SGHQLVR R G LAVL++THWVGL TP W RESDL  FRR+ILLY + + C  +QG+ +  + R+  A++EL+R+ G+RY+ PG +LV   +W+ RFS SPLP GA
Sbjct:  372 YISGHQLVRGRSGVLAVLYQTHWVGLTTPSWERESDLDLFRRHILLYWSREACQSKQGHHTYRVGRTRAAQQELARNRGERYVHPGDDLVLNATWLHRFSTSPLPVGA 479

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BLAST of mRNA_P-littoralis_Contig153.26.1 vs. uniprot
Match: A0A6H5KRJ7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRJ7_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 7.690e-31
Identity = 61/108 (56.48%), Postives = 79/108 (73.15%), Query Frame = 2

Query:  203 HLSGHQLVRCRGGFLAVLHETHWVGLLTPCWARESDLARFRRNILLY*TSDTCHFRQGNRSNHLSRSLVARRELSRSDGDRYLAPGFELVSYDSWMRRFSASPLPAGA 526
            + SGHQLVR R G LAVL++THW+GL TP W RESDL RFRR+ILL    + C  +QGNR+  ++R+  A+REL+RS G+ YL  G +LV + +W+R FS SPLP GA
Sbjct:  878 YTSGHQLVRGRSGVLAVLYQTHWLGLTTPSWERESDLDRFRRHILLRWFREVCQSKQGNRAYRVARTRAAQRELARSRGEHYLPHGADLVLHATWLRGFSTSPLPVGA 985

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BLAST of mRNA_P-littoralis_Contig153.26.1 vs. uniprot
Match: A0A6H5JZB2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZB2_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 2.690e-30
Identity = 59/108 (54.63%), Postives = 80/108 (74.07%), Query Frame = 2

Query:  203 HLSGHQLVRCRGGFLAVLHETHWVGLLTPCWARESDLARFRRNILLY*TSDTCHFRQGNRSNHLSRSLVARRELSRSDGDRYLAPGFELVSYDSWMRRFSASPLPAGA 526
            ++SGHQLVR R G LAVL++THWVGL TP W  ESDL +FRR I+L  + + C  +QGN +  ++R+  A+REL+R+ G+R+L PG +LV   +W+RRFS SPLP GA
Sbjct:  964 YISGHQLVRGRSGVLAVLYQTHWVGLTTPSWEGESDLDQFRRRIILNWSREACQSKQGNCTYRVARTRAAQRELARNRGERFLPPGADLVLNVTWLRRFSTSPLPVGA 1071

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BLAST of mRNA_P-littoralis_Contig153.26.1 vs. uniprot
Match: A0A6H5K2S7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2S7_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 9.090e-24
Identity = 52/105 (49.52%), Postives = 72/105 (68.57%), Query Frame = 2

Query:  203 HLSGHQLVRCRGGFLAVLHETHWVGLLTPCWARESDLARFRRNILLY*TSDTCHFRQGNRSNHLSRSLVARRELSRSDGDRYLAPGFELVSYDSWMRRFSASPLP 517
            ++SGHQLVR R G LAVL+ THW+GL TP W RESDL + RR+ILLY + +    +QGNR+   +R+  A+REL+R+ G+RYL PG +LV +++        P P
Sbjct:  519 YISGHQLVRGRSGVLAVLYHTHWIGLATPSWERESDLEQSRRHILLYWSREISQSKQGNRAYRNTRTRAAQRELARTRGERYLPPGADLVLHETGFAVSVLRPYP 623

The following BLAST results are available for this feature:

BLAST of mRNA_P-littoralis_Contig153.26.1 vs. uniprot

BLAST of mRNA_P-littoralis_Contig153.26.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24


Match Name	E-value	Identity	Description
A0A6H5KTX6_9PHAE	4.750e-34	59.26	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KDL4_9PHAE	8.570e-34	56.76	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KL08_9PHAE	3.760e-33	56.48	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JVY6_9PHAE	5.720e-33	57.41	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5J9W8_9PHAE	1.890e-32	56.48	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JK47_9PHAE	2.000e-32	56.48	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KZ08_9PHAE	2.920e-31	54.63	Integrase catalytic domain-containing protein n=2 ...	[more]
A0A6H5KRJ7_9PHAE	7.690e-31	56.48	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JZB2_9PHAE	2.690e-30	54.63	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K2S7_9PHAE	9.090e-24	49.52	Integrase catalytic domain-containing protein n=1 ...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-littoralis_Contig153	contig	P-littoralis_Contig153:94615..95156 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Pylaiella littoralis U1_48 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	1
Start	0
Model size	544
Hectar predicted targeting category	other localisation
Exons	1
Cds size	309

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680789730.3350122-UTR-P-littoralis_Contig153:94614..94847	1680789730.3350122-UTR-P-littoralis_Contig153:94614..94847	Pylaiella littoralis U1_48	UTR	P-littoralis_Contig153 94615..94847 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680789730.3478577-CDS-P-littoralis_Contig153:94847..95156	1680789730.3478577-CDS-P-littoralis_Contig153:94847..95156	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig153 94848..95156 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-littoralis_Contig153.26.1	prot_P-littoralis_Contig153.26.1	Pylaiella littoralis U1_48	polypeptide	P-littoralis_Contig153 94848..95156 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-littoralis_Contig153:94615..95156-
coding sequence from alignment at P-littoralis_Contig153:94615..95156-

protein sequence of mRNA_P-littoralis_Contig153.26.1

>prot_P-littoralis_Contig153.26.1 ID=prot_P-littoralis_Contig153.26.1|Name=mRNA_P-littoralis_Contig153.26.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=103bp
PIVVGEPRGRRRGVPSRRSEAVGLQVVLRCLFPELLEELERLQFRRPSSP
SSRRRRSGLRPGLDADDPPLRPPTRSLSRRLSSCATRDALGRPSHPVLGT
RI*

mRNA from alignment at P-littoralis_Contig153:94615..95156-

Legend: polypeptideCDSUTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-littoralis_Contig153.26.1 ID=mRNA_P-littoralis_Contig153.26.1|Name=mRNA_P-littoralis_Contig153.26.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=542bp|location=Sequence derived from alignment at P-littoralis_Contig153:94615..95156- (Pylaiella littoralis U1_48)
CCCATCGTAGTGGGTGAGCCTCGTGGGAGGCGCAGGGGCGTCCCGAGTCG
AAGGTCCGAAGCTGTCGGGCTTCAGGTGGTGTTGCGTTGCCTTTTCCCCG
AATTGTTGGAAGAGCTCGAGCGGCTCCAGTTCCGGCGACCCTCATCTCCA
TCCTCGCGGCGGCGGCGGTCCGGGCTCCGTCCGGGGCTGGACGCCGACGA
TCCACCTCTCCGGCCACCAACTCGTTCGTTGTCGCGGAGGCTTTCTAGCT
GTGCTACACGAGACGCACTGGGTCGGCCTTCTCACCCCGTGCTGGGCACG
AGAATCTGACCTGGCACGCTTTCGTCGGAACATCCTGCTGTACTAGACTT
CCGACACCTGCCACTTTCGCCAGGGCAACCGCTCCAACCATCTCTCCCGT
TCACTTGTCGCCCGTCGTGAGCTTTCGCGCTCCGATGGTGACCGCTATCT
TGCGCCGGGATTTGAGCTCGTCTCGTACGACTCCTGGATGCGCCGCTTCA
GCGCTTCCCCCCTTCCTGCTGGCGCCAGCTTTTGCACAAGGC

Coding sequence (CDS) from alignment at P-littoralis_Contig153:94615..95156-

>mRNA_P-littoralis_Contig153.26.1 ID=mRNA_P-littoralis_Contig153.26.1|Name=mRNA_P-littoralis_Contig153.26.1|organism=Pylaiella littoralis U1_48|type=CDS|length=309bp|location=Sequence derived from alignment at P-littoralis_Contig153:94615..95156- (Pylaiella littoralis U1_48)
CCCATCGTAGTGGGTGAGCCTCGTGGGAGGCGCAGGGGCGTCCCGAGTCG
AAGGTCCGAAGCTGTCGGGCTTCAGGTGGTGTTGCGTTGCCTTTTCCCCG
AATTGTTGGAAGAGCTCGAGCGGCTCCAGTTCCGGCGACCCTCATCTCCA
TCCTCGCGGCGGCGGCGGTCCGGGCTCCGTCCGGGGCTGGACGCCGACGA
TCCACCTCTCCGGCCACCAACTCGTTCGTTGTCGCGGAGGCTTTCTAGCT
GTGCTACACGAGACGCACTGGGTCGGCCTTCTCACCCCGTGCTGGGCACG
AGAATCTGA