mRNA_P-littoralis_Contig1528.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1528.1.1
Unique NamemRNA_P-littoralis_Contig1528.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1528.1.1 vs. uniprot
Match: A0A6H5KHG3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG3_9PHAE)

HSP 1 Score: 181 bits (458), Expect = 2.830e-52
Identity = 105/182 (57.69%), Postives = 121/182 (66.48%), Query Frame = 2 
Query:  437 MTARPDGAAVEGKEDAIFDE--SAVGEELESLMG-EPPSVSNECALALIKKHATTHPETIRDFIAETAARLAIESGCVHEAPLVRWKDNSALAETCGQHQSRLLGQVDQRVLDRQTKHGSARGYLLAKR*GTEVTTTLSTDLLCVG*GNQCPAGASMFAALKVFAGQGENGIPREIVSTMCK 973
            MTARPDGAA EG ED +FD+    VGEELE L+   PPS S+   LA+I +HA   PETIRDFI ETAARLA ESGC HEAPLV WK +   A TCG+ Q+   G + ++VLDRQ  H    GY LAKR   +V    S DL C G GNQC AG  M AAL+VFAG+  +GIP EIV  MCK
Sbjct:    1 MTARPDGAAEEGGEDTLFDDPVEVVGEELEGLLRLSPPSTSSTPVLAIITQHAIDSPETIRDFIEETAARLAKESGCQHEAPLVTWKQDREAATTCGRLQA---GVLSRKVLDRQMTHDGDPGYCLAKRVRNQVYYDTSIDLDCHGKGNQCSAGTCMKAALQVFAGEARDGIPSEIVRAMCK 179
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BLAST of mRNA_P-littoralis_Contig1528.1.1 vs. uniprot
Match: A0A6H5KC65_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC65_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 8.550e-32
Identity = 65/111 (58.56%), Postives = 80/111 (72.07%), Query Frame = 2 
Query:  428 PRSMTARPDGAAVEGKEDAIFDESAVGEELESLMGEPPSVSNECALALIKKHATTHPETIRDFIAETAARLAIESGCVHEAPLVRWKDNSALAETCGQHQSRLLGQVDQRV 760
            P SMTAR  GAA EG+ D IFD+  VGEE+E LMG+PPSVS++  LA ++KHA   PET+R FI E A  LAI +GC H  PLV WKD+ A A TCG+HQ+ L+G VD +V
Sbjct:   51 PGSMTARSRGAAPEGEPDPIFDDPVVGEEIEGLMGDPPSVSDDEELAAVRKHAIESPETVRAFIKERARSLAIGAGCPHSLPLVTWKDDPASAVTCGKHQAHLIGNVDLQV 161
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BLAST of mRNA_P-littoralis_Contig1528.1.1 vs. uniprot
Match: A0A6H5L174_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L174_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 1.270e-31
Identity = 65/116 (56.03%), Postives = 82/116 (70.69%), Query Frame = 2 
Query:  413 AVVAEPRSMTARPDGAAVEGKEDAIFDESAVGEELESLMGEPPSVSNECALALIKKHATTHPETIRDFIAETAARLAIESGCVHEAPLVRWKDNSALAETCGQHQSRLLGQVDQRV 760
            A+ +   SMTAR  GAA EG+ D IFD+  VGEE+E LMG+PPSVS++  LA ++KHA   PET+R FI E A  LAI +GC H  PLV WKD+ A A TCG+HQ+ L+G VD +V
Sbjct:   50 AIESPEXSMTARSRGAAPEGEPDPIFDDPVVGEEIEGLMGDPPSVSDDEELAAVRKHAIESPETVRAFIKERARSLAIGAGCPHSLPLVTWKDDPASAVTCGKHQAHLIGNVDLQV 165
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BLAST of mRNA_P-littoralis_Contig1528.1.1 vs. uniprot
Match: A0A6H5KC02_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC02_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 6.860e-31
Identity = 62/108 (57.41%), Postives = 77/108 (71.30%), Query Frame = 2 
Query:  428 PRSMTARPDGAAVEGKEDAIFDESAVGEELESLMGEPPSVSNECALALIKKHATTHPETIRDFIAETAARLAIESGCVHEAPLVRWKDNSALAETCGQHQSRLLGQVD 751
            P SMTAR  GAA EG+ D IFD+  VGEE+E LMG+PPSVS++  LA ++KHA   PET+R FI E A  +AI +GC H  PLV WKD+ A A TCG+HQ+ L+G  D
Sbjct:    8 PGSMTARSRGAAPEGEPDPIFDDPVVGEEIEGLMGDPPSVSDDEELAAVRKHAIESPETVRAFIKERARSVAIGAGCPHSLPLVTWKDDPASAVTCGKHQAHLVGNAD 115
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BLAST of mRNA_P-littoralis_Contig1528.1.1 vs. uniprot
Match: A0A6H5KG83_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG83_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 5.930e-26
Identity = 74/182 (40.66%), Postives = 97/182 (53.30%), Query Frame = 2 
Query:  437 MTARPDGAAVEGKEDAIFDESAVGEELES--LMGEPPSVSNECALALIKKHATTHPETIRDFIAETAARLAIESGCVHEAPLVRWKDNSALAETCGQHQSRLLGQVDQRVLDRQTKHGSARGYLLAKR*GTEVTTTLSTDLLCVG*GNQCPAGASMFAALKVFAGQGENGIPREIVSTMCKY 976
            MTA   GA  EG+ D +FD      EL S  +  EPPS+S+E     I +HA  HPETI  FI + A  LA E  C H  P V W+++ +   +CG HQS        R+ D  T++    GY +AKR   +     + DL C G GNQ  AG  M AA KVFAG G +G+P E+V  M ++
Sbjct:    1 MTAPSRGAVAEGEYDPLFDSPVDAGELCSGLVRVEPPSLSSEDTAVAILQHARLHPETIGSFIQKKAEELA-EGVCDHHQPPVSWQEDPSTT-SCGLHQSASAVLAAVRLQDVFTRYKDDPGYCVAKRVRNQGYYDTAKDLGCFGRGNQLKAGECMCAATKVFAGDGNDGLPTEVVKAMLQH 180
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BLAST of mRNA_P-littoralis_Contig1528.1.1 vs. uniprot
Match: A0A6H5JMB2_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMB2_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 4.510e-12
Identity = 38/70 (54.29%), Postives = 41/70 (58.57%), Query Frame = 2 
Query:  767 RQTKHGSARGYLLAKR*GTEVTTTLSTDLLCVG*GNQCPAGASMFAALKVFAGQGENGIPREIVSTMCKY 976
            RQ K     GY LAKR   +V     TDLL  G GNQC A   M AALKVF+G+G  GIP EIV  MC Y
Sbjct:    9 RQLKLDGDPGYCLAKRVRNQVYYDTPTDLLAKGAGNQCTAAECMVAALKVFSGKGNKGIPTEIVRAMCMY 78
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BLAST of mRNA_P-littoralis_Contig1528.1.1 vs. uniprot
Match: A0A6H5J8W1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8W1_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 7.540e-12
Identity = 41/72 (56.94%), Postives = 51/72 (70.83%), Query Frame = 2 
Query:  410 SAVVAEPRSMTARPDGAAVEGKEDAIFDESAVGEELESLMGEPPSVSNECALALIKKHATTHPETIRDFIAE 625
            S   A P SMTAR  G+A EG+ D IFD+  VGEE+E LMG+PPSVS++  LA ++KHA   PET+R FI E
Sbjct:  685 SGGAAAPGSMTARSRGSAPEGEPDPIFDDPVVGEEIEGLMGDPPSVSDDEELAAVRKHAIESPETVRAFIKE 756
[Close]
BLAST of mRNA_P-littoralis_Contig1528.1.1 vs. uniprot
Match: A0A6H5KKJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKJ8_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 9.540e-9
Identity = 34/77 (44.16%), Postives = 43/77 (55.84%), Query Frame = 2 
Query:  746 VDQRVLDRQTKHGSARGYLLAKR*GTEVTTTLSTDLLCVG*GNQCPAGASMFAALKVFAGQGENGIPREIVSTMCKY 976
            V  R  D  T++    GY +AKR   +V    + DL C G GNQ  AG  M AA KVFAG G +G+P E+V  M +Y
Sbjct:   13 VTPRQQDVCTRYKDDPGYCVAKRVRNQVYYDTAKDLGCFGRGNQLKAGECMRAATKVFAGDGNDGLPTEVVKAMLQY 89
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1528.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5KHG3_9PHAE2.830e-5257.69Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KC65_9PHAE8.550e-3258.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L174_9PHAE1.270e-3156.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KC02_9PHAE6.860e-3157.41Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KG83_9PHAE5.930e-2640.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMB2_9PHAE4.510e-1254.29Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J8W1_9PHAE7.540e-1256.94Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KKJ8_9PHAE9.540e-944.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1528contigP-littoralis_Contig1528:2..1891 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size983
Hectar predicted targeting categoryother localisation
Exons3
Cds size381
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789730.0073042-UTR-P-littoralis_Contig1528:1..3561680789730.0073042-UTR-P-littoralis_Contig1528:1..356Pylaiella littoralis U1_48UTRP-littoralis_Contig1528 2..356 +
1680789730.0174785-UTR-P-littoralis_Contig1528:369..4501680789730.0174785-UTR-P-littoralis_Contig1528:369..450Pylaiella littoralis U1_48UTRP-littoralis_Contig1528 370..450 +
1680789730.0532792-UTR-P-littoralis_Contig1528:1725..18911680789730.0532792-UTR-P-littoralis_Contig1528:1725..1891Pylaiella littoralis U1_48UTRP-littoralis_Contig1528 1726..1891 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789730.0298307-CDS-P-littoralis_Contig1528:450..7681680789730.0298307-CDS-P-littoralis_Contig1528:450..768Pylaiella littoralis U1_48CDSP-littoralis_Contig1528 451..768 +
1680789730.0421352-CDS-P-littoralis_Contig1528:1662..17251680789730.0421352-CDS-P-littoralis_Contig1528:1662..1725Pylaiella littoralis U1_48CDSP-littoralis_Contig1528 1663..1725 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1528.1.1prot_P-littoralis_Contig1528.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1528 451..1725 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1528.1.1

>prot_P-littoralis_Contig1528.1.1 ID=prot_P-littoralis_Contig1528.1.1|Name=mRNA_P-littoralis_Contig1528.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=127bp
MTARPDGAAVEGKEDAIFDESAVGEELESLMGEPPSVSNECALALIKKHA
TTHPETIRDFIAETAARLAIESGCVHEAPLVRWKDNSALAETCGQHQSRL
LGQVDQRVLDRQTKHGSARGYLLAKR*
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mRNA from alignment at P-littoralis_Contig1528:2..1891+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1528.1.1 ID=mRNA_P-littoralis_Contig1528.1.1|Name=mRNA_P-littoralis_Contig1528.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1890bp|location=Sequence derived from alignment at P-littoralis_Contig1528:2..1891+ (Pylaiella littoralis U1_48)
TAAGGGTTGCCTGACAAGGGCGGTAAAAGACACCCTCTGAACCGTAACAT
TTTTGTGCGGGACAACTGAAAAAAAAATGCGTTCTTGTAGGGGGGACGAA
TAAGGGGTTCTGTTAGCATATAAAAATGGACCCCCCCTATGCACAGCACA
TGTGGTTCAATACCACCACACGACGCTGCTGGGACTGCAACCAGGGTCCA
CGTCAAGCAGGGCTGATACTGCCACGCAACGAGCGCGGAGGTGAACAAAT
GGAGTCTAGCACTAGTCCCGATGCCAAGCGGGCGCGCAAGTCCACCCGCT
TACACCAAAGCTTCTCCCACAAAAGAGAGGTAGACGCAACGAAACAGCAG
AAAGAGCAGCAGCAGGAGCAGCAGCAGCAGCAGCAGCAGCCCGCGGGAGA
GCGCCCTTGCGGATCAAACGACTCAGCCGTGGTGGCTGAGCCGCGCTCCA
TGACCGCACGCCCCGATGGTGCTGCAGTGGAGGGCAAAGAGGATGCCATC
TTCGACGAGTCCGCGGTGGGGGAGGAGCTAGAGAGTTTGATGGGAGAGCC
GCCGAGTGTCAGCAATGAGTGCGCACTGGCTCTCATCAAGAAGCATGCCA
CGACCCACCCTGAGACCATCCGCGACTTCATCGCGGAGACAGCTGCTCGG
CTTGCGATCGAGTCGGGTTGTGTACACGAGGCGCCGCTCGTTAGGTGGAA
GGATAACTCGGCCCTGGCAGAAACGTGCGGCCAACACCAGTCTCGTCTCC
TCGGACAGGTTGACCAGGTGATTCACCACAGCAAATAAATCCCATGTTGT
GCAGCCTACTGCTGTAGTGTACAAGTATGCAAGAAAGAAAGTCGCATTCT
ATATTCGGTAGTACTCTCTTCCTTTCTTCGTTGCCTGGTATGTCTTTGCT
TGCCCTGTTCACACGACCGCTGCTTGCCCGTAATGTACAAGTGAACCACG
TGCATAATACTTACCCGTAGTCTGTATTTGTATGGTAGAATCCTAAGGAT
TGTCGAGTAACACACACCACTGGAACCCACCAGCCAGCCCTACTGCGTGC
TTGCCTCGAAATCAACCCATAACTTTCTACAGCATACCTGTACGACATCC
AAGGTCGGATGGTCCTGCTGTTTGGCGTTCGTGTTCGTTGTAATTTCTGT
GATATTTATGCTGCTGTTGTTGCTTTAGCTTTGGTTTCCTACGCCAACAC
CACCAGAGCAGCAGCAGTAGGAGCACCTCGATGAAAAGTGCTGCTACTGC
TGCTGCTGGTGTTGTTGTTTATGACACTTTCGTGCGGCAACAAAAATCGC
CATAAGCCAGCCAGCACTATGATGACAGCAGTAGCAGCAGTACTTGTAGG
AAGATAGGATTGAGACGCCGCTGGATATACTACAGCCGGATGTGTACAGC
TGGGACTGTCTGCGGGCCGAGGATAGGGTAAGTCCGGGCAATCACCAACC
GACCCGCTGCGGCTTTCTTTTTTGCTGAAAGTTAGCAGTAATTTTTCCTT
GTCCGTTCTTTCTTGTGACATGGTCAAACGAAAGTTGTATAACTGCGGGA
AACCCATGACCACAGGCAAAGTATTTCAGCATGCTCTCACCTGCCCCCCC
CCCCTCTCCATCTCCCCGCCCACTTCCCTCCCCTGTTCTTGATTAACGTT
GAATTATTTAGCGTGTGCTCGACAGGCAAACCAAACACGGCAGCGCCCGT
GGTTACCTCCTTGCGAAACGGTGAGGAACCGAAGTTACTACGACACTTTC
TACAGACTTGCTCTGCGTCGGGTAGGGGAACCAATGTCCGGCGGGGGCTT
CCATGTTCGCCGCTCTGAAGGTGTTCGCGGGGCAGGGGGAGAATGGTATC
CCCCGCGAGATTGTCTCCACCATGTGCAAGTACTAAAAAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1528:2..1891+

>mRNA_P-littoralis_Contig1528.1.1 ID=mRNA_P-littoralis_Contig1528.1.1|Name=mRNA_P-littoralis_Contig1528.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=381bp|location=Sequence derived from alignment at P-littoralis_Contig1528:2..1891+ (Pylaiella littoralis U1_48)
ATGACCGCACGCCCCGATGGTGCTGCAGTGGAGGGCAAAGAGGATGCCAT
CTTCGACGAGTCCGCGGTGGGGGAGGAGCTAGAGAGTTTGATGGGAGAGC
CGCCGAGTGTCAGCAATGAGTGCGCACTGGCTCTCATCAAGAAGCATGCC
ACGACCCACCCTGAGACCATCCGCGACTTCATCGCGGAGACAGCTGCTCG
GCTTGCGATCGAGTCGGGTTGTGTACACGAGGCGCCGCTCGTTAGGTGGA
AGGATAACTCGGCCCTGGCAGAAACGTGCGGCCAACACCAGTCTCGTCTC
CTCGGACAGGTTGACCAGCGTGTGCTCGACAGGCAAACCAAACACGGCAG
CGCCCGTGGTTACCTCCTTGCGAAACGGTGA
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