mRNA_P-littoralis_Contig1528.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1528.2.1
Unique NamemRNA_P-littoralis_Contig1528.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1528.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1528contigP-littoralis_Contig1528:202..534 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size314
Hectar predicted targeting categoryother localisation
Exons2
Cds size186
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789729.9362326-UTR-P-littoralis_Contig1528:201..2491680789729.9362326-UTR-P-littoralis_Contig1528:201..249Pylaiella littoralis U1_48UTRP-littoralis_Contig1528 202..249 +
1680789729.9727364-UTR-P-littoralis_Contig1528:454..5341680789729.9727364-UTR-P-littoralis_Contig1528:454..534Pylaiella littoralis U1_48UTRP-littoralis_Contig1528 455..534 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789729.949995-CDS-P-littoralis_Contig1528:249..3471680789729.949995-CDS-P-littoralis_Contig1528:249..347Pylaiella littoralis U1_48CDSP-littoralis_Contig1528 250..347 +
1680789729.9611783-CDS-P-littoralis_Contig1528:366..4541680789729.9611783-CDS-P-littoralis_Contig1528:366..454Pylaiella littoralis U1_48CDSP-littoralis_Contig1528 367..454 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1528.2.1prot_P-littoralis_Contig1528.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1528 250..454 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1528.2.1

>prot_P-littoralis_Contig1528.2.1 ID=prot_P-littoralis_Contig1528.2.1|Name=mRNA_P-littoralis_Contig1528.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=62bp
MESSTSPDAKRARKSTRLHQSFSHKREVDATKQSSSSSSSSPRESALADQ
TTQPWWLSRAP*
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mRNA from alignment at P-littoralis_Contig1528:202..534+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1528.2.1 ID=mRNA_P-littoralis_Contig1528.2.1|Name=mRNA_P-littoralis_Contig1528.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=333bp|location=Sequence derived from alignment at P-littoralis_Contig1528:202..534+ (Pylaiella littoralis U1_48)
CGTCAAGCAGGGCTGATACTGCCACGCAACGAGCGCGGAGGTGAACAAAT
GGAGTCTAGCACTAGTCCCGATGCCAAGCGGGCGCGCAAGTCCACCCGCT
TACACCAAAGCTTCTCCCACAAAAGAGAGGTAGACGCAACGAAACAGCAG
AAAGAGCAGCAGCAGGAGCAGCAGCAGCAGCAGCAGCAGCCCGCGGGAGA
GCGCCCTTGCGGATCAAACGACTCAGCCGTGGTGGCTGAGCCGCGCTCCA
TGACCGCACGCCCCGATGGTGCTGCAGTGGAGGGCAAAGAGGATGCCATC
TTCGACGAGTCCGCGGTGGGGGAGGAGCTAGAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1528:202..534+

>mRNA_P-littoralis_Contig1528.2.1 ID=mRNA_P-littoralis_Contig1528.2.1|Name=mRNA_P-littoralis_Contig1528.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=186bp|location=Sequence derived from alignment at P-littoralis_Contig1528:202..534+ (Pylaiella littoralis U1_48)
ATGGAGTCTAGCACTAGTCCCGATGCCAAGCGGGCGCGCAAGTCCACCCG
CTTACACCAAAGCTTCTCCCACAAAAGAGAGGTAGACGCAACGAAACAGA
GCAGCAGCAGCAGCAGCAGCAGCCCGCGGGAGAGCGCCCTTGCGGATCAA
ACGACTCAGCCGTGGTGGCTGAGCCGCGCTCCATGA
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