mRNA_P-littoralis_Contig152.84.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig152.84.1
Unique NamemRNA_P-littoralis_Contig152.84.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig152.84.1 vs. uniprot
Match: A0A6H5JXP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXP5_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 9.150e-7
Identity = 32/83 (38.55%), Postives = 47/83 (56.63%), Query Frame = 1 
Query:    1 RMRDERLRQVALLGDWTGGGARYPGGQEFDWLKRLQEDLEAFGIIIDNKKG-WEATAERVDEWDGKIDENVGRLMHEWFKRRG 246
            RM D RL +  LL    GG   Y GGQE DW+ RL+EDL AF +  + + G W+ +A+  + W  K+++   RLM +   + G
Sbjct:    2 RMEDNRLPKRMLLRAMAGG-VGYRGGQESDWVSRLEEDLVAFNMGDEKEGGKWKESAKDPEVWYNKVEDGAVRLMRKQMAQAG 83
[Close]
BLAST of mRNA_P-littoralis_Contig152.84.1 vs. uniprot
Match: A0A6H5JPM0_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPM0_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 9.500e-7
Identity = 34/97 (35.05%), Postives = 52/97 (53.61%), Query Frame = 1 
Query:    1 RMRDERLRQVALLGDWTGGGARYPGGQEFDWLKRLQEDLEAFGIIIDNKKG-WEATAERVDEWDGKIDENVGRLMHEWFKRRGEFKETRRLKRERDA 288
            RM D RL +  LLG   GG   Y GGQE DW+ RL +DL AF +  + + G W+ +A+  + W  K+++     M +W ++  E     +  RE +A
Sbjct: 1474 RMEDNRLPKHMLLGGMAGG-VGYRGGQESDWVSRLDQDLVAFNMGEEKEGGKWKESAKDPEVWYNKVEDGAAWFMRKWHRQEAEASAKHQRAREAEA 1569
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig152.84.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JXP5_9PHAE9.150e-738.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPM0_9PHAE9.500e-735.05Reverse transcriptase domain-containing protein n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig152contigP-littoralis_Contig152:382969..384022 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1054
Hectar predicted targeting categoryother localisation
Exons1
Cds size888
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789728.8695896-UTR-P-littoralis_Contig152:382968..3831311680789728.8695896-UTR-P-littoralis_Contig152:382968..383131Pylaiella littoralis U1_48UTRP-littoralis_Contig152 382969..383131 -
1680789728.889698-UTR-P-littoralis_Contig152:384019..3840221680789728.889698-UTR-P-littoralis_Contig152:384019..384022Pylaiella littoralis U1_48UTRP-littoralis_Contig152 384020..384022 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789728.8789945-CDS-P-littoralis_Contig152:383131..3840191680789728.8789945-CDS-P-littoralis_Contig152:383131..384019Pylaiella littoralis U1_48CDSP-littoralis_Contig152 383132..384019 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig152.84.1prot_P-littoralis_Contig152.84.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig152 383132..384019 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig152.84.1

>prot_P-littoralis_Contig152.84.1 ID=prot_P-littoralis_Contig152.84.1|Name=mRNA_P-littoralis_Contig152.84.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=296bp
MRDERLRQVALLGDWTGGGARYPGGQEFDWLKRLQEDLEAFGIIIDNKKG
WEATAERVDEWDGKIDENVGRLMHEWFKRRGEFKETRRLKRERDAPEGQA
LAKRGRMDSGDEREEGCGRPKGQQGCSGVHVARQREQPKAKLRCGRIGKP
VGQKSRSGVAAAPQLLCTVVAVTGGMRVRMRRASVNRQTSCEASLRLMAC
FLFIFPFPISHVSLCSQCLSLILFSASALLTLPRSLSPFLPPFSYPRLSS
PLFPGLLLLTLFSFFVVLSDCNNICWAPRSGLHWFCLGYVLWLVG*
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mRNA from alignment at P-littoralis_Contig152:382969..384022-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig152.84.1 ID=mRNA_P-littoralis_Contig152.84.1|Name=mRNA_P-littoralis_Contig152.84.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1054bp|location=Sequence derived from alignment at P-littoralis_Contig152:382969..384022- (Pylaiella littoralis U1_48)
CGCATGAGAGACGAGAGACTCCGGCAAGTTGCTCTGCTGGGAGATTGGAC
GGGGGGGGGTGCGAGGTACCCGGGGGGACAAGAGTTTGACTGGCTGAAGC
GACTGCAGGAGGACCTCGAAGCGTTCGGCATCATCATCGACAATAAAAAG
GGGTGGGAGGCAACTGCCGAGAGAGTGGATGAATGGGACGGCAAGATCGA
CGAGAATGTGGGGAGGTTAATGCACGAGTGGTTTAAGAGACGGGGAGAAT
TCAAAGAGACACGTCGACTGAAGAGGGAGCGGGACGCACCTGAGGGACAG
GCCTTGGCCAAGAGAGGGAGAATGGATAGCGGGGATGAACGAGAGGAGGG
GTGCGGGCGGCCAAAAGGGCAGCAGGGTTGTAGTGGGGTTCACGTTGCGA
GGCAGAGAGAGCAACCAAAAGCCAAGCTGCGATGTGGCAGGATTGGAAAA
CCTGTAGGGCAGAAATCGCGGAGCGGTGTAGCTGCTGCCCCGCAACTGCT
GTGTACGGTGGTGGCAGTGACAGGAGGCATGCGAGTGCGCATGAGGAGAG
CAAGCGTGAACAGGCAGACCTCGTGCGAGGCAAGTCTGCGATTGATGGCA
TGTTTTTTGTTTATTTTTCCCTTTCCGATTTCCCACGTTTCGCTATGCTC
TCAGTGTCTTTCACTAATTTTGTTTTCTGCTTCCGCTTTGTTAACCCTCC
CTCGCTCCTTGTCCCCCTTCCTTCCGCCGTTTTCGTATCCCCGCCTTTCA
TCTCCTCTTTTTCCAGGTCTTCTTTTGCTTACCTTATTTTCATTTTTTGT
TGTTCTCTCAGACTGCAATAATATTTGCTGGGCTCCGCGCTCCGGTTTGC
ATTGGTTTTGTCTTGGTTATGTGCTCTGGCTGGTTGGTTAATATGGTTTG
TCTTGGTGTTGTTCGTTTCAAATTTTGTTTCCAAGCCTGTATTTCTGTAT
TTGTGTGCTTTGGCTACCAAAGGAGGTACCCCAACGGCACCATCTCTGAT
TTTTGTTCGGATGGCCATCGTTTAGTTCCTTCTTTCGTTTATTTTTCACT
TTCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig152:382969..384022-

>mRNA_P-littoralis_Contig152.84.1 ID=mRNA_P-littoralis_Contig152.84.1|Name=mRNA_P-littoralis_Contig152.84.1|organism=Pylaiella littoralis U1_48|type=CDS|length=888bp|location=Sequence derived from alignment at P-littoralis_Contig152:382969..384022- (Pylaiella littoralis U1_48)
ATGAGAGACGAGAGACTCCGGCAAGTTGCTCTGCTGGGAGATTGGACGGG
GGGGGGTGCGAGGTACCCGGGGGGACAAGAGTTTGACTGGCTGAAGCGAC
TGCAGGAGGACCTCGAAGCGTTCGGCATCATCATCGACAATAAAAAGGGG
TGGGAGGCAACTGCCGAGAGAGTGGATGAATGGGACGGCAAGATCGACGA
GAATGTGGGGAGGTTAATGCACGAGTGGTTTAAGAGACGGGGAGAATTCA
AAGAGACACGTCGACTGAAGAGGGAGCGGGACGCACCTGAGGGACAGGCC
TTGGCCAAGAGAGGGAGAATGGATAGCGGGGATGAACGAGAGGAGGGGTG
CGGGCGGCCAAAAGGGCAGCAGGGTTGTAGTGGGGTTCACGTTGCGAGGC
AGAGAGAGCAACCAAAAGCCAAGCTGCGATGTGGCAGGATTGGAAAACCT
GTAGGGCAGAAATCGCGGAGCGGTGTAGCTGCTGCCCCGCAACTGCTGTG
TACGGTGGTGGCAGTGACAGGAGGCATGCGAGTGCGCATGAGGAGAGCAA
GCGTGAACAGGCAGACCTCGTGCGAGGCAAGTCTGCGATTGATGGCATGT
TTTTTGTTTATTTTTCCCTTTCCGATTTCCCACGTTTCGCTATGCTCTCA
GTGTCTTTCACTAATTTTGTTTTCTGCTTCCGCTTTGTTAACCCTCCCTC
GCTCCTTGTCCCCCTTCCTTCCGCCGTTTTCGTATCCCCGCCTTTCATCT
CCTCTTTTTCCAGGTCTTCTTTTGCTTACCTTATTTTCATTTTTTGTTGT
TCTCTCAGACTGCAATAATATTTGCTGGGCTCCGCGCTCCGGTTTGCATT
GGTTTTGTCTTGGTTATGTGCTCTGGCTGGTTGGTTAA
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