mRNA_P-littoralis_Contig152.41.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig152.41.1
Unique NamemRNA_P-littoralis_Contig152.41.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig152.41.1 vs. uniprot
Match: D8LRG0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRG0_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 2.720e-29
Identity = 66/88 (75.00%), Postives = 73/88 (82.95%), Query Frame = 1 
Query:    1 MTKSALKFLAAATLATTAPSHAG-RNGSGLDLLKHVQDRDQRVAKQDIWLEKRSAGRLQNTRG-HLDSSVF-DQWQGYYSAEVAAFSC 255
            MTKSA+K + AATLA  APS A  RNGSGLDLL +V  ++QRVAKQDIWLE+RSAGRLQNTR  HL  S+F DQWQGYYSAEVAAFSC
Sbjct:    1 MTKSAIKCITAATLAFAAPSAAASRNGSGLDLLHNVGGKNQRVAKQDIWLEERSAGRLQNTRQEHLAPSIFFDQWQGYYSAEVAAFSC 88
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig152.41.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LRG0_ECTSI2.720e-2975.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig152contigP-littoralis_Contig152:166949..169016 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size936
Hectar predicted targeting categorysignal peptide
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-18_004390.1
Cds size258
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789727.1939611-CDS-P-littoralis_Contig152:166948..1670721680789727.1939611-CDS-P-littoralis_Contig152:166948..167072Pylaiella littoralis U1_48CDSP-littoralis_Contig152 166949..167072 +
1680789727.203753-CDS-P-littoralis_Contig152:168204..1683381680789727.203753-CDS-P-littoralis_Contig152:168204..168338Pylaiella littoralis U1_48CDSP-littoralis_Contig152 168205..168338 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789727.2157261-UTR-P-littoralis_Contig152:168338..1690161680789727.2157261-UTR-P-littoralis_Contig152:168338..169016Pylaiella littoralis U1_48UTRP-littoralis_Contig152 168339..169016 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig152.41.1prot_P-littoralis_Contig152.41.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig152 166949..168338 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig152.41.1

>prot_P-littoralis_Contig152.41.1 ID=prot_P-littoralis_Contig152.41.1|Name=mRNA_P-littoralis_Contig152.41.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=86bp
MTKSALKFLAAATLATTAPSHAGRNGSGLDLLKHVQDRDQRVAKQDIWLE
KRSAGRLQNTRGHLDSSVFDQWQGYYSAEVAAFSC*
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mRNA from alignment at P-littoralis_Contig152:166949..169016+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig152.41.1 ID=mRNA_P-littoralis_Contig152.41.1|Name=mRNA_P-littoralis_Contig152.41.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2068bp|location=Sequence derived from alignment at P-littoralis_Contig152:166949..169016+ (Pylaiella littoralis U1_48)
ATGACTAAGTCCGCCCTCAAATTCTTGGCTGCTGCCACCCTGGCCACCAC
CGCCCCATCACACGCGGGGAGAAACGGAAGCGGGCTGGATCTGTTGAAAC
ATGTTCAGGACCGTGATCAGAGAGGTGGGTTTGCCCGAATCATGGATTCA
GAAAGATGCAGCCACCGCCGTACGTGAGGATGGGGATTCACATGAGCAGG
CAACGGCCTCCCAACGCCAACCCAATAACAGTAGCGCCACGTTGTCACAC
AGCGACAAGTATCAACTTTGTCGTTTGTGGCTTGCGACAAACAAGCGTGT
GGTTTTTGTTTCCAAGAGAAACGAAGAATTCGCATAGAACTTCTGCACGC
CTGTAGAATCACTTGTATCGGTGATTCGGTGACCCAGGGTCCTCACCTTG
AGAACGGGTCATTGCCAAACAGGCCGCCTCCTGATTTCTGACTCTAACTG
CTAATATCTCTCCGTGTCGGGGTTTATTCGTGACTGACTAACCGTATCAT
CCTCTCTAAAGCAATGCGCTCTACTGCCGCTGTATGATGATCAAATAAGT
GCATGTATGCGTACGTACTAGTCCAGCGTTTATGAGCGTGTGCATATCTG
TTCGACCTAGGTGCAGCTGCTTTGCGAGCGTATGATGCATGGTCGCGAAC
CAAAGAAGTACACCAGTTTGGACGACATTTGTTTTGTGTGTGCGCATGAA
TGTATGGACTCATTCTAACAGCAGGCCTAAGCTCACACCAACTGAACGCC
GAGCAGCTCTGTAGACTACGTACAGCGGTACTGCTTCTGCTGTATTGCTG
TCATCGTCGCATCACGCAGAACTTCGTTGCAAGTACAGGGTACTTGAGTG
ATGATAGGTTGAGATTATCAGACCAACACGGAGAAATTGTGATACCAATT
ATACTACCACATACGATGAATGCGGCAAACGGAAACGTTGCCACAAGAAG
GATTCAGTTGTTGGTGAGAACTTGGAACTGTCAGTACGGATTTCCCCGCC
CCGCGCTCTCCCCTTATTGATCACGCAAATGTCTCATGATCGAATGCTGT
CGTTTGGAGCAACCATCACTAGTCCTACCTACGGTGAACAACTCGTGTCC
TGCTGCCGTAGACCTGCTTCATCCGATGCACGAGTTACTTCGAAGTGTTA
TGTACGAAGTAATACCGTTACAGCAGTAGCAATTGGCTTGGTCTCACACA
CTGCCTTCCCCCCCCTCCGCCTCCTCTCGAACTCCTGTGTTTTCATCGGC
CCACAGTCGCCAAGCAAGACATCTGGTTGGAGAAGCGCTCCGCCGGCAGG
CTACAAAACACGAGAGGGCACCTCGATTCCTCGGTGTTTGACCAATGGCA
AGGGTACTACAGCGCAGAAGTGGCTGCATTTTCCTGCTGACCAAGCGAGC
AGGAAAAAAAAAAGAAGGAGTGGCCCGTGCTTCTTTCGGTGCTTGCTTGC
TTGCTTTGTGATCCCAAATACAAATAGTCGCGTTTCCGTGGCTCTCCCGC
GCGCGTATGGCGATTGTGGGGGCTTTGTGTTGGATGTGCTGTTGTCAACC
ACCAAGTTCGGCAAAGGCTTTTCTTGTTCGGGTTGTCCAGAGATACCAGG
TGTGCATGATGAAAACCCCCCTTAATGAGGCCATGGCGGGTGCTGTAGTC
GGCTGTTCGCACTCTCGTTGAAAACCTTTTCATAATAGGCTAGTGAGTAA
TGTTTTCATCTTATTTCTGTTCCGTGCTCGGGTCCGATCGGAAGGGACAC
GATATGATAGCTAGTGAGTGTTGCGTGTGTGAAGAGTATTAGTACGATTA
CAGCAGTAGTAGTATTCGTTGTGCGTTCTTTTTGTGAAGTCGCCGATGTT
TTCACTCCCGCAAACCCCTGGATGCACCTCGAACGTTCACGTACGCACCG
GTGTGGTTGGTGTTGAGATTTGTGAAAAGACACATCTCGAGATTCCCTTG
AGTAACGACGAAAGGGAGCCGAAGGAGTCAGGGCGTCATGTGTGGTCCTG
ATTCGATTTATTAAGTTGTTCCTTGTTGGGTGTACAAAAAAGCAAAATAT
CTGTAGTCGAATCTTGAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig152:166949..169016+

>mRNA_P-littoralis_Contig152.41.1 ID=mRNA_P-littoralis_Contig152.41.1|Name=mRNA_P-littoralis_Contig152.41.1|organism=Pylaiella littoralis U1_48|type=CDS|length=258bp|location=Sequence derived from alignment at P-littoralis_Contig152:166949..169016+ (Pylaiella littoralis U1_48)
ATGACTAAGTCCGCCCTCAAATTCTTGGCTGCTGCCACCCTGGCCACCAC
CGCCCCATCACACGCGGGGAGAAACGGAAGCGGGCTGGATCTGTTGAAAC
ATGTTCAGGACCGTGATCAGAGAGTCGCCAAGCAAGACATCTGGTTGGAG
AAGCGCTCCGCCGGCAGGCTACAAAACACGAGAGGGCACCTCGATTCCTC
GGTGTTTGACCAATGGCAAGGGTACTACAGCGCAGAAGTGGCTGCATTTT
CCTGCTGA
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