mRNA_P-littoralis_Contig152.39.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig152.39.1
Unique NamemRNA_P-littoralis_Contig152.39.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig152.39.1 vs. uniprot
Match: D8LRG1_ECTSI (HNH endonuclease family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRG1_ECTSI)

HSP 1 Score: 465 bits (1197), Expect = 1.040e-152
Identity = 239/338 (70.71%), Postives = 276/338 (81.66%), Query Frame = 2 
Query:  107 MVHPKRTRTS-----SWFLGACVVSSAVHGGAGYLIPATSFFSAADRSERCPRQDDSFRGNRIAAVPRAAAALWRVAPQQARRQEKSITMKQKQARKKTTRVRLRRAGPRTDVEGYSHSAFLKMRDEVALQVATTKQGTRRSRKINFSGGLDSCPCLVLNADYQPLSYLPLSLWGWQDVIKAVFSEKVVVLATYGDRSIRSPSVVVQLPSVIALKEFVNNHRSDPPFTRRNLFLRDSHRCQYCMKYFPPHNLSFDHVVPKKLGGKGAWDNVVTACGRCNNRKSDCHPRDLRSIGMTLAKYPRTPSFSELQSKARRYPPSEIHETWEDYLYFESEIVED 1105
            M H KR R +     +WFLGACV+++A  G + +   A S +SA+  S R  + D + RG  +        A   VAP  A R E  ++MK K+A KK   VR RR+GP  +VEGYSH+AF+KM++EVALQVAT K+G+RR+R +NF+GG+DSCPCLVLNADYQPLSYLPLSLWGWQDVIKAVFSEKVVVLATYGDRS+RSPSVVVQLPSVIALKEFVNNHR+ PPFTRRNLFLRDSH+CQYC KYF PHNLSFDHVVPKKLGGKG WDNVVTACGRCNNRKSDCHPRDL+SIGM+LAKYP TP+FS+LQ+KARRYPP EIHETW DYLYFESEI+E+
Sbjct:    1 MAHRKRARNNGARAKTWFLGACVMNAAAQGASAF---AFSSYSASSFSLR-GQADPASRGTVL--------AKQAVAP--AGRAENLLSMKIKKAGKKP--VRSRRSGPPANVEGYSHAAFVKMKNEVALQVATNKKGSRRTRTVNFNGGIDSCPCLVLNADYQPLSYLPLSLWGWQDVIKAVFSEKVVVLATYGDRSVRSPSVVVQLPSVIALKEFVNNHRTHPPFTRRNLFLRDSHQCQYCQKYFAPHNLSFDHVVPKKLGGKGTWDNVVTACGRCNNRKSDCHPRDLKSIGMSLAKYPVTPTFSQLQAKARRYPPLEIHETWGDYLYFESEILEE 322
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BLAST of mRNA_P-littoralis_Contig152.39.1 vs. uniprot
Match: A0A836CK35_9STRA (HNH endonuclease family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK35_9STRA)

HSP 1 Score: 253 bits (646), Expect = 2.710e-73
Identity = 118/185 (63.78%), Postives = 144/185 (77.84%), Query Frame = 2 
Query:  542 LDSCPCLVLNADYQPLSYLPLSLWGWQDVIKAVFSEKVVVLATYGDRSIRSPSVVVQLPSVIALKEFVNNHRSDPPFTRRNLFLRDSHRCQYCMKYFPPHNLSFDHVVPKKLGGKGAWDNVVTACGRCNNRKSDCHPRDLRSIGMTLAKYPRTPSFSELQSKARRYPPSEIHETWEDYLYFESEI 1096
            L+SCP LVLNADYQPLSYLPLSLW WQ+ IKAV+ ++VVVLAT+ DR +RS +V ++LPSVIALK +VN H   P FTRRNL+LRD ++C YC K F   +LSFDHV P+KLGG  +W NVVT+C RCNN K DCHP+ L  IGM L K P  P+F ELQ++ARRYPP  IH+TW +YLY++S I
Sbjct:   78 LESCPALVLNADYQPLSYLPLSLWPWQEAIKAVWMDRVVVLATH-DRYVRSANVELKLPSVIALKGYVNQHAKVPSFTRRNLYLRDGYQCAYCSKQFQAGDLSFDHVTPRKLGGPTSWTNVVTSCHRCNNAKGDCHPKSLSRIGMRLNKAPHIPTFYELQNQARRYPPKLIHKTWAEYLYYDSAI 261
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BLAST of mRNA_P-littoralis_Contig152.39.1 vs. uniprot
Match: A0A7S2S5X4_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S5X4_9STRA)

HSP 1 Score: 234 bits (598), Expect = 7.970e-65
Identity = 107/198 (54.04%), Postives = 143/198 (72.22%), Query Frame = 2 
Query:  485 VATTKQGTRRSRKINFSGGLDSCPCLVLNADYQPLSYLPLSLWGWQDVIKAVFSEKVVVLATYGDRSIRSPSVVVQLPSVIALKEFVNNHRSDPPFTRRNLFLRDSHRCQYCMKYFPPHNLSFDHVVPKKLGGKGAWDNVVTACGRCNNRKSDCHPRDLRSIGMTLAKYPRTPSFSELQSKARRYPPSEIHETWEDYL 1078
            V+T  +     + +N+   L+ CP LVLNAD+QPLSY+PLS+W WQD IKAVF+E+VVV+A Y +  +RS SV VQ+PSVIALK++V   R+ P FTRRN+FLRDS+ CQYC       +L+FDHV+P+  GG  +W+NVVTAC RCNN+K D  P+ L  +G++L + PR PS  ELQ+ AR++PP  +H TW DYL
Sbjct:  190 VSTILEECMVKKSVNYFNNLEQCPVLVLNADFQPLSYIPLSIWSWQDAIKAVFAERVVVVANY-EHEVRSASVAVQVPSVIALKQYVPQARATPTFTRRNVFLRDSYCCQYCGTCAQTQHLTFDHVLPRSKGGDTSWNNVVTACHRCNNKKKDMMPQQLHHLGLSLLREPRVPSHYELQAAARKFPPKVMHHTWRDYL 386
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BLAST of mRNA_P-littoralis_Contig152.39.1 vs. uniprot
Match: A0A2E4F2L9_9PROT (HNH endonuclease n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E4F2L9_9PROT)

HSP 1 Score: 214 bits (545), Expect = 1.930e-60
Identity = 100/185 (54.05%), Postives = 135/185 (72.97%), Query Frame = 2 
Query:  542 LDSCPCLVLNADYQPLSYLPLSLWGWQDVIKAVFSEKVVVLATYGDRSIRSPSVVVQLPSVIALKEFVNNHRSDPPFTRRNLFLRDSHRCQYCMKYFPPHNLSFDHVVPKKLGGKGAWDNVVTACGRCNNRKSDCHPRDLRSIGMTLAKYPRTPSFSELQSKARRYPPSEIHETWEDYLYFESEI 1096
            +D+CP LVLNADY+PLSY PLSLW WQ+ +KAVF ++V ++A Y ++ +RSPS  ++LPSVI+LK +V ++R  P FTR N+FLRD   CQYC KYF  H+L+FDHV+PK  GG   W NV+TAC  CN RK +   R +  +GM L   PR P+  ELQ+  RRYPP+ +HE+W D+LY++SE+
Sbjct:    3 VDTCPALVLNADYRPLSYFPLSLWSWQETVKAVFLDRVHIVAEY-EQEVRSPSWQMRLPSVISLKRYVQSNRR-PAFTRFNVFLRDGFTCQYCRKYFDTHDLTFDHVLPKSRGGFTNWTNVITACASCNLRKGN---RLMAEVGMHLVYMPRVPTVYELQNVGRRYPPNYLHESWSDFLYWDSEL 182
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BLAST of mRNA_P-littoralis_Contig152.39.1 vs. uniprot
Match: UPI001B298D4B (HNH endonuclease n=1 Tax=Rhodospirillales bacterium TMPK1 TaxID=2812848 RepID=UPI001B298D4B)

HSP 1 Score: 213 bits (542), Expect = 7.900e-60
Identity = 103/191 (53.93%), Postives = 134/191 (70.16%), Query Frame = 2 
Query:  524 INFSGGLDSCPCLVLNADYQPLSYLPLSLWGWQDVIKAVFSEKVVVLATYGDRSIRSPSVVVQLPSVIALKEFVNNHRSDPPFTRRNLFLRDSHRCQYCMKYFPPHNLSFDHVVPKKLGGKGAWDNVVTACGRCNNRKSDCHPRDLRSIGMTLAKYPRTPSFSELQSKARRYPPSEIHETWEDYLYFESEI 1096
            +  S  LDSCP LVLNAD++PLSY PLSLW WQD +KAVF ++V +L+ Y D+++RSP+  ++LPSVI+LKE+V   R  P FTR N+FLRDS  CQYC   FP H L+FDHV+P+  GG+  WDNV+TAC  CN RK D   +  R  GM     P  PS  ELQ   R++PP+ +HE+W DYLY++SE+
Sbjct:   12 LRLSPPLDSCPALVLNADFRPLSYFPLSLWSWQDTVKAVFLDRVNILSHY-DQTVRSPNFEMRLPSVISLKEYVQATRR-PAFTRFNVFLRDSFTCQYCGTGFPTHELTFDHVIPRSRGGRTTWDNVLTACSACNLRKGD---KLCRECGMHPRLEPFQPSAFELQENGRQFPPNFLHESWRDYLYWDSEL 197
[Close]
BLAST of mRNA_P-littoralis_Contig152.39.1 vs. uniprot
Match: A0A6M8VNA4_9PROT (HNH endonuclease n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A6M8VNA4_9PROT)

HSP 1 Score: 211 bits (537), Expect = 2.510e-59
Identity = 101/185 (54.59%), Postives = 131/185 (70.81%), Query Frame = 2 
Query:  542 LDSCPCLVLNADYQPLSYLPLSLWGWQDVIKAVFSEKVVVLATYGDRSIRSPSVVVQLPSVIALKEFVNNHRSDPPFTRRNLFLRDSHRCQYCMKYFPPHNLSFDHVVPKKLGGKGAWDNVVTACGRCNNRKSDCHPRDLRSIGMTLAKYPRTPSFSELQSKARRYPPSEIHETWEDYLYFESEI 1096
            LD+CP LVLNAD++PLSY PLSLW WQ+ +KAVF ++V +L+ Y DRS+ SPS  ++LPSVIALKE+V  H   P FTR N+FLRD  +CQYC + F  H L+FDHV+P+  GG   W+N+V AC  CN RKSD  PR+     M   + P TPS  ELQ   R +PP+ +HE+W DYLY++SE+
Sbjct:    5 LDNCPTLVLNADFRPLSYFPLSLWSWQEAVKAVFMDRVHILSEY-DRSVHSPSFEMRLPSVIALKEYVMPHHK-PAFTRFNVFLRDMWQCQYCGETFKTHELTFDHVIPRSRGGDTTWENIVAACNDCNVRKSDKLPRECH---MHPLRNPTTPSIYELQENGRAFPPNFLHESWGDYLYWDSEL 184
[Close]
BLAST of mRNA_P-littoralis_Contig152.39.1 vs. uniprot
Match: UPI00167299FA (HNH endonuclease n=1 Tax=Thalassobaculum fulvum TaxID=1633335 RepID=UPI00167299FA)

HSP 1 Score: 211 bits (536), Expect = 5.440e-59
Identity = 102/189 (53.97%), Postives = 134/189 (70.90%), Query Frame = 2 
Query:  539 GLDSCPCLVLNADYQPLSYLPLSLWGWQDVIKAVFSEKVVVLATYGDRSIRSPSVVVQLPSVIALKEFVNNHRSDPPFTRRNLFLRDSHRCQYCMKYFPPHNLSFDHVVPKKLGGKGAWDNVVTACGRCNNRKSDCHPRDLRSIGMTLAKYPRTPSFSELQSKARRYPPSEIHETWEDYLYFESEIVED 1105
            G D+ P LVLNAD++PLSY PLSLW WQD +KAVF ++V +++ Y D  +RSPS  ++LPSVIALKE+V+  R  P FTR N+FLRD   CQYC   FP H L+FDHVVP+  GG+ +W+NVVTACG CN RK +  PR   +IGM     PR P+  +LQ   R +PP+ +HE+W DYLY++ E+ +D
Sbjct:    3 GPDNAPALVLNADFRPLSYFPLSLWSWQDAVKAVFLDRVNIVSHY-DTVVRSPSFEMKLPSVIALKEYVHQSRK-PAFTRFNVFLRDRFACQYCGDRFPTHELTFDHVVPRSRGGRTSWENVVTACGACNLRKGNHMPR---AIGMVPQVTPRQPTAYDLQDAGRGFPPNYLHESWRDYLYWDIELEQD 186
[Close]
BLAST of mRNA_P-littoralis_Contig152.39.1 vs. uniprot
Match: A0A6I7P8K3_9PROT (HNH endonuclease n=1 Tax=Geminicoccaceae bacterium TaxID=2448052 RepID=A0A6I7P8K3_9PROT)

HSP 1 Score: 210 bits (535), Expect = 5.950e-59
Identity = 102/185 (55.14%), Postives = 132/185 (71.35%), Query Frame = 2 
Query:  542 LDSCPCLVLNADYQPLSYLPLSLWGWQDVIKAVFSEKVVVLATYGDRSIRSPSVVVQLPSVIALKEFVNNHRSDPPFTRRNLFLRDSHRCQYCMKYFPPHNLSFDHVVPKKLGGKGAWDNVVTACGRCNNRKSDCHPRDLRSIGMTLAKYPRTPSFSELQSKARRYPPSEIHETWEDYLYFESEI 1096
            LD+CP LVLNADYQPLSY PLSLWGWQD +KA+F ++V V++ Y DR IRSPS  ++LPSV+ALKE+V      PPFTR NLFLRD   CQYC   F   +L+FDHVVP+  GG+ +WDN+VTAC RCN +K +  P +    GM     PR P+  ELQ   R +PP+ +HE+W D+LY+++E+
Sbjct:   12 LDACPALVLNADYQPLSYFPLSLWGWQDAVKAMFLDRVAVVSYY-DREIRSPSFRLRLPSVVALKEYVQQSHY-PPFTRFNLFLRDRFGCQYCGTRFRAEDLTFDHVVPRSRGGQTSWDNIVTACTRCNLQKGNKLPAEC---GMPPRTKPRRPTNYELQRAGRAFPPNYLHESWRDFLYWDTEL 191
[Close]
BLAST of mRNA_P-littoralis_Contig152.39.1 vs. uniprot
Match: A0A7W6WA90_9PROT (5-methylcytosine-specific restriction endonuclease McrA n=2 Tax=Roseospira visakhapatnamensis TaxID=390880 RepID=A0A7W6WA90_9PROT)

HSP 1 Score: 210 bits (534), Expect = 6.710e-59
Identity = 103/189 (54.50%), Postives = 131/189 (69.31%), Query Frame = 2 
Query:  530 FSGGLDSCPCLVLNADYQPLSYLPLSLWGWQDVIKAVFSEKVVVLATYGDRSIRSPSVVVQLPSVIALKEFVNNHRSDPPFTRRNLFLRDSHRCQYCMKYFPPHNLSFDHVVPKKLGGKGAWDNVVTACGRCNNRKSDCHPRDLRSIGMTLAKYPRTPSFSELQSKARRYPPSEIHETWEDYLYFESEI 1096
              GG    P LVLNADY+PLSY PLSLW WQD +K+VF ++V V+  Y D  IRSPS+ V+LPSVI+LKEFV+  R  P FTR N+FLRD   CQYC + FP H L+FDHVVP+  GG+  W+NVVTAC  CN RKS+  P+   +  M L + PR P+   LQ   R +PP+ +HE+W DYLY++SE+
Sbjct:    1 MEGGPPHAPALVLNADYRPLSYFPLSLWPWQDAVKSVFLDRVHVVCEY-DTVIRSPSLEVRLPSVISLKEFVSTARM-PAFTRFNVFLRDRFTCQYCGRRFPTHELTFDHVVPRSWGGRTTWENVVTACAACNLRKSNRTPK---TASMPLMREPRVPTHHALQDVGRAFPPNFLHESWRDYLYWDSEL 184
[Close]
BLAST of mRNA_P-littoralis_Contig152.39.1 vs. uniprot
Match: A0A7S3AAW0_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3AAW0_9RHOD)

HSP 1 Score: 212 bits (540), Expect = 1.290e-58
Identity = 99/196 (50.51%), Postives = 136/196 (69.39%), Query Frame = 2 
Query:  500 QGTRRSRKINFSGGLDSCPCLVLNADYQPLSYLPLSLWGWQDVIKAVFSEKVVVLATYGDRSIRSPSVVVQLPSVIALKEFVNNHRSDPPFTRRNLFLRDSHRCQYCMKYFPPHNLSFDHVVPKKLGGKGAWDNVVTACGRCNNRKSDCHPRDLRSIGMTLAKYPRTPSFSELQSKARRYPPSEIHETWEDYLYFE 1087
            + T   +  N    LD CP LVLN++YQPLSY+PLSLW WQ+V+KAV+ ++VV+LATY D  +RSPSV ++LPSVIALK + +     P FTR N+F+RD+  CQYC +  P  +L+FDHV+P+  GG   W+NVVTAC  CN +K    P+ ++   + L K P  PS+++LQS AR+Y P  IH TWEDY+Y++
Sbjct:   73 EATTAVQDPNTGSRLDQCPALVLNSNYQPLSYVPLSLWPWQEVVKAVYLDRVVILATY-DIQVRSPSVSLELPSVIALKRYQSLGGKRPAFTRYNVFIRDNFTCQYCRQKLPDRDLTFDHVIPRSRGGTSGWENVVTACVDCNYKKG---PKLIKETDLKLRKVPVEPSYAQLQSMARKYRPKHIHPTWEDYVYWD 264
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig152.39.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRG1_ECTSI1.040e-15270.71HNH endonuclease family protein n=1 Tax=Ectocarpus... [more]
A0A836CK35_9STRA2.710e-7363.78HNH endonuclease family protein n=1 Tax=Tribonema ... [more]
A0A7S2S5X4_9STRA7.970e-6554.04Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A2E4F2L9_9PROT1.930e-6054.05HNH endonuclease n=1 Tax=Rhodospirillaceae bacteri... [more]
UPI001B298D4B7.900e-6053.93HNH endonuclease n=1 Tax=Rhodospirillales bacteriu... [more]
A0A6M8VNA4_9PROT2.510e-5954.59HNH endonuclease n=1 Tax=Proteobacteria bacterium ... [more]
UPI00167299FA5.440e-5953.97HNH endonuclease n=1 Tax=Thalassobaculum fulvum Ta... [more]
A0A6I7P8K3_9PROT5.950e-5955.14HNH endonuclease n=1 Tax=Geminicoccaceae bacterium... [more]
A0A7W6WA90_9PROT6.710e-5954.505-methylcytosine-specific restriction endonuclease... [more]
A0A7S3AAW0_9RHOD1.290e-5850.51Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig152contigP-littoralis_Contig152:160439..166722 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LRG1
PFAMsHNH_5
Model size3124
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons5
Evalue4.91e-163
EggNOG OGsCOG1403@1|root,2QQI3@2759|Eukaryota
Ec32 ortholog descriptionHNH endonuclease family protein
Ec32 orthologEc-18_004400.1
DescriptionHNH endonuclease
Cds size1041
COG categoryV
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig152.39.1prot_P-littoralis_Contig152.39.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig152 162416..166616 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789727.0938096-UTR-P-littoralis_Contig152:160438..1624151680789727.0938096-UTR-P-littoralis_Contig152:160438..162415Pylaiella littoralis U1_48UTRP-littoralis_Contig152 160439..162415 -
1680789727.1575923-UTR-P-littoralis_Contig152:166616..1667221680789727.1575923-UTR-P-littoralis_Contig152:166616..166722Pylaiella littoralis U1_48UTRP-littoralis_Contig152 166617..166722 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789727.1085467-CDS-P-littoralis_Contig152:162415..1626411680789727.1085467-CDS-P-littoralis_Contig152:162415..162641Pylaiella littoralis U1_48CDSP-littoralis_Contig152 162416..162641 -
1680789727.119622-CDS-P-littoralis_Contig152:163253..1634381680789727.119622-CDS-P-littoralis_Contig152:163253..163438Pylaiella littoralis U1_48CDSP-littoralis_Contig152 163254..163438 -
1680789727.130768-CDS-P-littoralis_Contig152:164125..1642551680789727.130768-CDS-P-littoralis_Contig152:164125..164255Pylaiella littoralis U1_48CDSP-littoralis_Contig152 164126..164255 -
1680789727.1398437-CDS-P-littoralis_Contig152:164581..1647321680789727.1398437-CDS-P-littoralis_Contig152:164581..164732Pylaiella littoralis U1_48CDSP-littoralis_Contig152 164582..164732 -
1680789727.1488278-CDS-P-littoralis_Contig152:166267..1666161680789727.1488278-CDS-P-littoralis_Contig152:166267..166616Pylaiella littoralis U1_48CDSP-littoralis_Contig152 166268..166616 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig152.39.1

>prot_P-littoralis_Contig152.39.1 ID=prot_P-littoralis_Contig152.39.1|Name=mRNA_P-littoralis_Contig152.39.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=347bp
MVHPKRTRTSSWFLGACVVSSAVHGGAGYLIPATSFFSAADRSERCPRQD
DSFRGNRIAAVPRAAAALWRVAPQQARRQEKSITMKQKQARKKTTRVRLR
RAGPRTDVEGYSHSAFLKMRDEVALQVATTKQGTRRSRKINFSGGLDSCP
CLVLNADYQPLSYLPLSLWGWQDVIKAVFSEKVVVLATYGDRSIRSPSVV
VQLPSVIALKEFVNNHRSDPPFTRRNLFLRDSHRCQYCMKYFPPHNLSFD
HVVPKKLGGKGAWDNVVTACGRCNNRKSDCHPRDLRSIGMTLAKYPRTPS
FSELQSKARRYPPSEIHETWEDYLYFESEIVEDDEENEEEDAESAA*
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mRNA from alignment at P-littoralis_Contig152:160439..166722-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig152.39.1 ID=mRNA_P-littoralis_Contig152.39.1|Name=mRNA_P-littoralis_Contig152.39.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=6284bp|location=Sequence derived from alignment at P-littoralis_Contig152:160439..166722- (Pylaiella littoralis U1_48)
TACACGACCTGTTTGCACACTTTCCTTTTGCTGCTGTACATCCGTCCTTT
CTGCTGCCTCTATCTCTATCTCTCTCTCTCTCACACACACACCTCGGTCT
CTCGCAATGGTGCACCCGAAGAGAACGAGAACTAGTTCATGGTTCCTTGG
AGCGTGCGTGGTAAGCTCAGCTGTGCATGGCGGGGCAGGATACCTGATCC
CCGCTACGTCTTTCTTCTCCGCTGCTGATCGATCTGAGCGGTGTCCCCGC
CAAGACGATTCCTTCCGAGGAAATCGAATAGCAGCAGTGCCCAGAGCAGC
TGCAGCACTTTGGCGGGTGGCTCCGCAGCAGGCTAGGAGGCAGGAGAAAT
CGATTACAATGAAGCAGAAACAGGCCCGGAAGAAGACGACGAGAGTTCGA
CTAAGGCGAGCTGGTCCACGGACCGATGTGGAAGGGTACTCTCACTCTGC
CTTCCGTGAGTTGATCCTAGTGTGCCAGATTCAGTTCGTTCTCTATCTAC
AAGCTGCCTAATGCTGCTGTGCAATAGGGACATCAGTGGTTTGACGTGAG
GATCGGTCGGGTGTGTTTGCCGCTCTGCGCGTCTTTGTGAACACGTTATG
GGCACCGTTCCGATGCTCGAGGCAGCGGCCGTTTTCATCTGATCGAAACA
TCCACCGTTTGGATTCGAGTACGTACAAAAAGCAAAAGTTCTGTGATACC
ACAGGGGAGAGATTCCATTCAAGAACGATTTTTCTCTTTACAGCAGTAGA
CTAATTCACCTATACACGGGTACAGCAGGTATGTACTGGAAGTTGAGGTC
CAGGATTTAAATGTAATCAAATAATTACGAAGTCATAATTTGTTGACACC
GCCCTCAGGAAATACACCGCTGCGGGATCAAGCAGGACAGCACGTAAAGC
TGCACCTAGTACAGCTGAACGTAGCAGTATAGTCTGATACAAGAGTACAT
AGGTATGATACATGATTTACTTGTAACATGTATGGGACGGCTGTACCCCG
ATAAAAAAATAAGGCAAGTACCGCCGTGGGGAGTAAAGAAAAAAAAAAAT
CCTGTCTTGACGACTTCCTATCGTATGTACTGCTGTGAGACCCCGGTTGG
AGCGTCTACCTACCCGAAAGGGGTAGAGTGGCGTCCAATTCAAGGGATGA
CAAGACACACACATGTATCATATCATTATACGATAATCCTATGTATCGTA
CATATATTTCTGCTGGTCAATCACGCGCTGGTATATGGATACGTATGCGT
TTAGTACCTGGTAATTTTTTTGATTGCAGTAACGTATATACATGCGGCTC
TGCCGTGTGTTATGTAACGTCGGCGGTTTATTGATCGTCCACTGCGTGCC
CGACAATATAGCGGAACAAAAGTACCGGGTCGCGACGCGTCGCATTGCAC
TGGTTTCGTTATTTATCCGCCCCCCCCCCACATTTGATGTACTTCTTGTA
CCCAAACCATGACAAACATATACTTGTGCACTGCGAAGCGTATCATAGTG
AAGCTGTGGCGAGATGTCATCACACAACCGAAAATAAAGCACCAGGTATC
AACCCACCCACCTGCGAAGGAGGATCCAAGGAGGGTTCATACACCGCTGG
CCCGAACAAGAACACCCTTAACAGCAGCTACACTGCTCTTAGCTGAACTC
CAGTCTCTAAGAAATGTACCAAGTATCATATAATCCCTCCCCGCCACTGC
TGCTGCTGCTGCGCTCAAACAACGAGCCTCCTGCACAGAACGGCGCACTA
CCTGTCACAGGATACCTTTACGTCTCACGGTTGAATATGTTTATGCCTGG
TGCACCGCTGCTGCACTGGTGTGAAGTTCAAGGGAGCGTATGCAGTAGTC
GCCGACCCAAACCTTGCGCAAGTTCTCGCTCAAATTCTTTACGACATCCT
TGTGATTTGCGCACGCGCCCTCTCTCGTTACCCCCCCCCCCACCCTCCAC
TCCTCAATCTCCTCCCCGTCGTCGCCATTTATCTCCGCAGTCAAGATGAG
GGACGAGGTGGCTCTCCAGGTGGCGACCACCAAGCAGGGCACCCGCAGGT
CGAGAAAGATCAACTTCAGCGGGGGGCTGGACTCTTGCCCGTGCCTCGTG
CTCAACGCAGACTACCAGCCCCTGTCCTATCTCCCCCTCAGGTATCACAA
GTTTGCAGGCGTGCGTGACACCGCCGACACAGTGGAGATATCATAGGTCC
AAGAGGCTTTGCTTGAACGTCGTCGGGAATGCTGGCCCCTCTCAAAACTG
CTGCTCTTGTTGCGAACGATGTTTTCGGGGCATTAATAGTTTTCCTTGTA
CAGGAGGCTTTTTCGGGTGGTGGGGGAGGGGGGGGGACGAAGGGTGTCTG
GGGGGTCTTGTGGTTCAAATATTACGCCGCCCCCGATTGGTCAACTTGCC
GCCTCTCTTTGCTGACTGATCACGTCGACCTCCCGACCGCCGCGCCCGCC
ACCCCCGTCTGTTGCAGTTTATGGGGATGGCAGGACGTAATTAAGGCGGT
GTTCAGTGAAAAGGTGGTCGTCTTGGCCACCTACGGGGACCGCTCTATTC
GTTCTCCAAGCGTGGTGGTTCAGCTCCCCAGCGTGATCGCTCTTAAGGTG
GGGATACTGCTGTTGTTTCGACCGTTTTTTGCCTCTTTTGTGCCCCTTGT
GCGCTGCTGCTGTGTGTTAGTGCAACCGCTGTGACTCTGTGTTGACTCTT
ACCCGTGGTCACAAACCAGAAGCATTTTGTAAGTGTGTGTGCGACCGCGG
GCGTGTGTGCGTGTGTTTGTGTCTTTGGCAGCGGGCCGGGCGCGTCTTGC
ATTGATGGCATTTTCGTTTCCTCAGACGGACCAGTATCGATCAAGGCTCG
ATAGAAGACACACACAGCCGCGCCAGAAGCACAGCACGCTCAGGGCTGCT
CGTTGCCCAACAACAATCTTATTCGGCGACAAAAACGGGATGACACCCCC
TCTTCTGTCTGTTGGCTGGACCCCACGGCATCGGGTTGCACGCGTTTGTG
TGAATGGGAGCCTCAGGGCAAATAACAACGAGTCCTACGCAAGTCACGAA
CGGGTTCATTTCTTGCCTTCACCCCCTGTATTAATTACAGCACGGCCGCA
TTACGCTTGTCGTGTTGTTCCTCATCTACCAAGTAAAACTGGGATTTTCA
CGTGTGATGCTCCGACCGTGCCTCCCCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCGTCCCCCGCTCTGCGCTACGCCGCCCTCGCGTCGCCTGTCCTA
CCCTACACTATCCTTTCCTATCCCCACCCCGCAGGAGTTCGTGAACAACC
ACAGGAGCGACCCGCCGTTCACGCGGCGCAACCTGTTCCTGAGGGACTCG
CACAGGTGCCAGTATTGCATGAAGTATTTCCCTCCGCACAACCTCAGCTT
CGACCACGTCGTGCCCAAGAAGCTCGGCGGAAAGGGCGCGTGGGATAACG
TCGTCACCGCGTGCGGGAGGTGCGTGGCCAGAGCTGCCGTCTTCTCCGTG
TGCCCTGTATGTGTGCTTGCTTCCTTGCTTCCTTGCTTTCGTTTCGTGTT
GCTGTTGCTGCTGTTGCTGCTGCTTTTGTGCGCGGTGGGGCTGGTTTCCG
ACTGCTGTGCACATATGCACAGCGTCGGGTTTGGTTACCAGTTTCCTCCG
TGTTTTGTGGTGCCCCGGCGCACTGCCCGATCAGAGTGCACTGGAATCAT
GTGCGCCGTTTGTTTTGTGTACACATTAATTCAAGATTACATTGTATACG
ATAGGAGTGGAACGTCCAGTACAGAGGGGGAGGAGCCGACGGTACAGGCT
GCTTCCCGCTGACGGCGGGGGTGGACGCCGAATGACACATCAGTATGACA
GGGGGGAGTCTGAATTGGTCGCTGCAAAACTCTGGCGCTTCGTGCGCCAA
CCAACCAACCAACCAACCGACACCTTGTAGTAACGCTTTCCTCACGTTTG
TTAAAAACTCAACGCCAAAGATGCGAAATACTATTCTTAAAAGCGAGAAC
GTTAAACGTTACAGTAACGTTACACGGGTCCCCTCTATTTTCGCTCCGAA
ACCGCCCTTCCTTGTTGTCCTCCACGCGAAGATGTAACAACCGCAAGAGC
GACTGCCACCCCCGGGACCTGCGCTCCATCGGGATGACCCTCGCGAAGTA
CCCCAGGACGCCCTCCTTCAGCGAGCTGCAGAGCAAGGCCCGGAGGTACC
CGCCCAGCGAGATTCACGAAACCTGGGAAGACTACCTCTACTTTGAGAGC
GAGATTGTTGAGGACGACGAGGAGAATGAGGAAGAGGATGCGGAATCTGC
GGCATAGCGGGGGGGAGGTGGGGGGTGGAGAGAGGTCGCGCTGGAGTATT
GTTCCGCCCGATTGTTTTCCCGCTTTGAACTAGTTTTTCTTTCGTCCCTC
TCTGATTTCCGTCCGATTGACGAAAGAGAGGCGAGACGAGAGGGTGCAGA
TATTGTTTATTTTGTAAAAGGAAGTTGTTGTAGATAGATCTATTGGCGCA
TTTGCCTTTTTGGTCTCTCACGGTGATGGGGCGTTAATGAAGGAAACGAA
AGAGTCGATCGACGGTCGTTGTGCAGATGTTTTTTTGGAGACCGTCATCA
TTTAGTTGTTCATTTTTTCCGTGGGTATTGCTGTGTGGGAGATTTGTGGA
TAACAAGAGAGAAAAAATTGGTTCCATGTTGTACTGGATGAAAAAACTGG
AGGGTTTTTTTCCGAGAGGGCGTTGAGACGCGCGCGGGGGTGTGGGATGT
TAAGGTTGGACCCCGCAACCTGTAAAGGAAGGAAGCGAAGTTATTTGGAA
CGGCGAGGCTGAGAGAGAGATGTAGCGAAGCGTGTGTAAGATGGGTGCTG
CTGCTGGCGTGCCGAGGGAGTGTATCATGGTGCGGAGAAGCATGTTTCGA
GGGGTCGGGTCGAGGCGAAAGCATGGAGGAGAGGGCGAGTGTTTATATAT
ACCATACCTGCACATTGTTCCTGTTGTTTGCTGTGGTATCTGTTTTGGAA
AGTGTATTATTGATTGTCCGCCCGCAAGAGAAAGGACCCACCTTGTGCCA
AGCCTTTCACTTCGCTCTATCCAACATTATTTCGAGCTGACATTGTAAGG
GTTCTGCTGTCGGAAGTCTCCCCCATGTATGATGATCATATATATGTATA
CTTCGTATGATATTTGGACGGAAGTTTGCTGGCGGTAAGGCTGCAATTTC
CACGGCGCTATGGTGTATCAAGTTCCCTTGTCGGCGTTATGGTCTCAAGG
GGGGGGGGTTGCTGTTTTTTTTTTTTGTCTATGCGGGCATGCAAACTGCC
TCAACTTCTGATGTATGATACGTACGATACGACAACGGGGGTATATGATA
CTTCGTACCAGTGTGTGATATCATAGCAGCAATGTTGTTGCGTTGTTTCT
AGCTGTGCGCCCCCAATTTCTGAGAGTATGTGTCAATTGTAGTGACGGCG
GTGCCCCCCTGCACGTACGTCCTGTGTTTTTGTAACCTTATCCCAAAGGT
CGTGGTCCAGGTTGTGGGCGCTGTCTCGACGAAGTGGGCCCTTGAGCGTA
TGTTGGGTGTGACGTATCATGTGTAGCCTGGTGTTTGGAAATTTGGCGGC
TTGGCTTGGGGGCCCATGTATTCGTCAGGGCTGATTTTTCGGGTGCGCTG
TTTCCTTTACAAAGCGATGCTTGTGGCATGCTTTGAAAAGTACTTGGCTC
CATGAAACCAACTCACCGGTAGGGTTCGGGTCCCAAACTTTTATTTTTCC
TTCACCTGCCCCGACGCGCCTATCATAGTGTGCCTGCGGGCTACGATTTG
AAGCTTTCGGTATGCAGCCGTCACCAGCAGCATTATTGTCTGAAATGAAG
ACCACCGCAAAGTGTGTTGCCGGCACTCCGTGAAGATTGAGGGGCGCCGC
AGCCGTGCTGCGCCGTGTTGGTTGGCCACATCGGGACATCGGGACCGAAG
GGCGCGTGCCTGTGAACCAGCTGCAAAAATGAACAAGGAAAAATTTCAGG
CTTCTTTCTGGAGAAATTTGAGTGGTGACCCCCCGAAGCTGCGGCGATCA
GGCATCAAATGCGACTGTAGGTCACGTGATACTTGACGTGAAGCGCTGCA
ATAATACGAGGAGATTTTTCACCAGCAGGCCAGAAATTCTTACTCGCGAG
GCACAACAACAGGCGCTCATGCAAGAGCCTCTCTTTCGCTTTCTCGGACC
CCGCCTCCCCTCCCCCAAAAAAACGTTTCAGCCGTAGAATGCCACTCCGC
TGCCGTATCGGCTCGCCCCCGTAAGAGCCGCGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig152:160439..166722-

>mRNA_P-littoralis_Contig152.39.1 ID=mRNA_P-littoralis_Contig152.39.1|Name=mRNA_P-littoralis_Contig152.39.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1041bp|location=Sequence derived from alignment at P-littoralis_Contig152:160439..166722- (Pylaiella littoralis U1_48)
ATGGTGCACCCGAAGAGAACGAGAACTAGTTCATGGTTCCTTGGAGCGTG
CGTGGTAAGCTCAGCTGTGCATGGCGGGGCAGGATACCTGATCCCCGCTA
CGTCTTTCTTCTCCGCTGCTGATCGATCTGAGCGGTGTCCCCGCCAAGAC
GATTCCTTCCGAGGAAATCGAATAGCAGCAGTGCCCAGAGCAGCTGCAGC
ACTTTGGCGGGTGGCTCCGCAGCAGGCTAGGAGGCAGGAGAAATCGATTA
CAATGAAGCAGAAACAGGCCCGGAAGAAGACGACGAGAGTTCGACTAAGG
CGAGCTGGTCCACGGACCGATGTGGAAGGGTACTCTCACTCTGCCTTCCT
CAAGATGAGGGACGAGGTGGCTCTCCAGGTGGCGACCACCAAGCAGGGCA
CCCGCAGGTCGAGAAAGATCAACTTCAGCGGGGGGCTGGACTCTTGCCCG
TGCCTCGTGCTCAACGCAGACTACCAGCCCCTGTCCTATCTCCCCCTCAG
TTTATGGGGATGGCAGGACGTAATTAAGGCGGTGTTCAGTGAAAAGGTGG
TCGTCTTGGCCACCTACGGGGACCGCTCTATTCGTTCTCCAAGCGTGGTG
GTTCAGCTCCCCAGCGTGATCGCTCTTAAGGAGTTCGTGAACAACCACAG
GAGCGACCCGCCGTTCACGCGGCGCAACCTGTTCCTGAGGGACTCGCACA
GGTGCCAGTATTGCATGAAGTATTTCCCTCCGCACAACCTCAGCTTCGAC
CACGTCGTGCCCAAGAAGCTCGGCGGAAAGGGCGCGTGGGATAACGTCGT
CACCGCGTGCGGGAGATGTAACAACCGCAAGAGCGACTGCCACCCCCGGG
ACCTGCGCTCCATCGGGATGACCCTCGCGAAGTACCCCAGGACGCCCTCC
TTCAGCGAGCTGCAGAGCAAGGCCCGGAGGTACCCGCCCAGCGAGATTCA
CGAAACCTGGGAAGACTACCTCTACTTTGAGAGCGAGATTGTTGAGGACG
ACGAGGAGAATGAGGAAGAGGATGCGGAATCTGCGGCATAG
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