mRNA_P-littoralis_Contig152.36.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig152.36.1 vs. uniprot
Match: D8LRG2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRG2_ECTSI) HSP 1 Score: 1159 bits (2999), Expect = 0.000e+0 Identity = 694/1067 (65.04%), Postives = 774/1067 (72.54%), Query Frame = 1
Query: 697 MQSFATQLLAPDN--SSGWFFLENQMREKVVTNRISPSSRYHNRPGVESYKPLDNMFPHSLKGFKWDVGKLVAKLKVKLREQARGIAGYQFLAACKLFRAEVPPNRRQGGRISVEDFRRVVEYKFGMKLDPGEILALFDFLVPGTGENIEIAAMVRVLEPDDYAGSWFNTRESTDMFGFTKPGPEQVVLQAKKMNVGGSWNLKLIEDKIREKIHERVGGTNLFEVQAAYTLFQDGRNTGLTKKGFQAQMHDKFAVVLSQKDVDDVFRKYDPKGTGKLDVHSFVLRLISPAAEPEPWFRDRDTYEFHVLNRAPMKKDPMKADCWKRTNWTFRQFETTLRDKLFAKSNQDGGRFAFKSAVNLMRSANPDHLDSSNMDRKALKFVVFRRFDIVMDDHLLDEVFSRFDPEGTGKMPVHRLVQHLLPTNEDGSHHLVPKTDEQGQATKKLLGKIFGMTGKRREMISLNGSGVEDPQGKSLLERMAAGDKGDGEKIKDQLAQKAKRAXXXXXXXXXTAVEAARNGTKVSPAALXXXXXXXXRESSPLAFSGEVPAAPGATGATVLRGTAARPETTSTNSGGSSEAGYGERVRGDRGXXXXXXXXGNEPRGESRQSWSGSFLL-EREKLLDAREIALREWEDTIVA-NGGGQVPPTAVATNTTRAAVPRESTGKRSAPSLNPRPPRRERERPASATALRRHAGGHRQPQLVRGN----RPASA-GRTTGCSVGDSSG-RSNSAQSSRNSPRMSRAKEEEAALITKCRALGAARRXXXXXXXXRRQ--SLGIAPDRPEHRVHRSPQADPPRHPGKGTDV--------------VADANIIGLGYHGSGGDGPTSAVPRPEAGDRATRVEAAVGSTAAAAARIPRRPQSAAAARGGGVCPRTSSRPRSATASR------SSGTGSSEARAGHWSAPEGDEAGPEKVKPKS-GSADGDKPSGTGGPGHGSVRRHAPTSLDAGDSRGERFRKRLDSAYAVQMRAMQRLHKRRAQSSHRRSPERPASGGCEGVFPGQFKSRYSGLDRFVLARTGEGGRERGPAALTGASRYGSGVAFYG 3798
MQSFAT+LLAPD S+GWFFL+NQMREKVVTNRISPSSRYHNRPGVESYKPLDN+FP LKGFKWD+GKLVAKLKVKLREQA+GIAGYQFLAACKLFR+EV NR+ G RIS EDFR VVEYKFGMKLD E+L+LF +LVPGTG++I+I++MVRVLEPDDY SWFNTRESTDMFGFTKPGPE+VVLQAKKMNVGGSWNLKLIE KIREKI+ERVGGT+LFEVQAAYTLFQDGRNTGLTKKGFQAQMHDKFAVVLS KDVDDVFRKYDPKGTGKLDVHSFV+RLISP AEPEPWF ++DTYEFHVLNRAPMKKDPMKA+ W+RT WTFRQFETTLRDKL AKSNQDGGRFAFKSAVNL+RSANPDHLDSS MDR+A KFV+FRRFDIVMDDHLLDE+F+RFDPE TGKM VHRLVQ+LLP+ +D SHHLVPKTDEQGQATK LLGK+FGMTGKRREMISLNGSGV+DPQG+SLLERMAAGD+GDGEKIK +LA+KAK A AVEAAR+G A XXXXXXXXR++SPL F+G++ PGATG AARPET+STN XX RG SRQS +G F L EREK LDARE ALR ED I+A + QV P +V T T RA + G R+A PRPP RERERPASATALRR+ G RPASA GR G G ++ R +A SR +P S + EEA I +CRAL AARR RQ + G RPE V+R+ QA PPRHPG D V A G G G T+ PR EA +AT EAA G A RIP RPQSAA+AR + SRP S S+G G+ R W G E ++++PKS GS ++ G P H R A SL GD RG R+R RLDS YA+QMRAMQRL KRRAQS+H+RSPERPASGGCEG+ GQFKSRYSGLDRFVLARTGEG R+ G AA GASR+G GV FYG
Sbjct: 1 MQSFATRLLAPDRAGSNGWFFLDNQMREKVVTNRISPSSRYHNRPGVESYKPLDNVFPQCLKGFKWDMGKLVAKLKVKLREQAKGIAGYQFLAACKLFRSEVSSNRK-GDRISAEDFRGVVEYKFGMKLDHDEVLSLFHYLVPGTGDSIDISSMVRVLEPDDYTDSWFNTRESTDMFGFTKPGPEKVVLQAKKMNVGGSWNLKLIEGKIREKIYERVGGTSLFEVQAAYTLFQDGRNTGLTKKGFQAQMHDKFAVVLSSKDVDDVFRKYDPKGTGKLDVHSFVVRLISPTAEPEPWFGNKDTYEFHVLNRAPMKKDPMKAESWQRTKWTFRQFETTLRDKLLAKSNQDGGRFAFKSAVNLLRSANPDHLDSSYMDREAFKFVIFRRFDIVMDDHLLDEIFARFDPERTGKMAVHRLVQYLLPSKDDCSHHLVPKTDEQGQATKTLLGKVFGMTGKRREMISLNGSGVDDPQGESLLERMAAGDRGDGEKIKAELARKAKAAAVAATAREMAAVEAARSGGPAVTPAXXXXXXXXXRDNSPLVFNGDLVPTPGATGTAAQHAAAARPETSSTNXXXXXXXXXXXXXX----------XXXXVGRGGSRQSSTGEFSLREREKHLDAREAALRRREDAIMAADKSDQVSPASV-TTTNRAVDSGAANGGRAA--ARPRPPSRERERPASATALRRYMGNXXXXXXXXXXXXXXRPASAAGRERGTMSGHNNDCRPTNANRSRGAPGASPRQREEADSIARCRALDAARRKAAATVAAGRQRSTPGDRQHRPEDGVNRAAQAVPPRHPGTANDADKRPVSASLPSREGVRQAGETGTST-GRGDGNLTTGGPRAEASGKATGTEAAGG-----AERIPARPQSAASARR-----KADSRPPSGXXXXXXXXXXSAGGGARRPRQERWGGEGGGEIRSKQIEPKSQGSGRREEYFDRGVPKHEPSPRPASASLAEGD-RGVRYRTRLDSVYALQMRAMQRLQKRRAQSAHKRSPERPASGGCEGISTGQFKSRYSGLDRFVLARTGEGARDGGAAAQVGASRFGDGVPFYG 1041
BLAST of mRNA_P-littoralis_Contig152.36.1 vs. uniprot
Match: A0A835YQE8_9STRA (EF-hand domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQE8_9STRA) HSP 1 Score: 592 bits (1525), Expect = 1.720e-188 Identity = 315/646 (48.76%), Postives = 426/646 (65.94%), Query Frame = 1
Query: 265 VQNQFAIVLSWEEIRALHKLYGDPDSGVIDFMKFAGALGRSSGQEPDKSRRAYNFLPKNTTEHDLKAIEKKIMHKLEDRCEVAGNYQYQWARRILCDPTSTLAGGMSKEQLKLRLSGLLGVELSDGEMNVLFKKYADPATGRVHMQSFATQLLAPDNSSGWFFLENQMRE---KVVTNRISPSSRYHNRPGVESYKPL--DNMFPHSLKGFKWDVGKLVAKLKVKLREQARGIAGYQFLAACKLFRAEVPPNRRQGGRISVEDFRRVVEYKFGMKLDP----------------GEILALFDFLVPGTGENIEIAAMVRVLEPDDYAG-SWFNTRESTDMFGFTKPGPEQVVLQAKKMNVGGSWNLKLIEDKIREKIHERVGGT-NLFEVQAAYTLFQDGRNTGLTKKGFQAQMHDKFAVVLSQKDVDDVFRKYDPKGTGKLDVHSFVLRLISPAAEPEPWFRDRDTYEFHVLNRAPMKKDPMKADCWKRTNWTFRQFETTLRDKLFAKSNQDGGRFAFKSAVNLMRSANPDHLDSSNMDRKALKFVVFRRFDIVMDDH---------------LLDEVFSRFDPEGTGKMPVHRLVQHLLPTNEDGSHHLVPKTDEQGQATKKLLGKIFGMTGKRREMISLNGSG 2088
V++QFA+ L+ EE+ AL Y G +DF++FA AL ++ D++R +NFLP + DL+ +E+ + K+ DR +AGNYQYQ A R+LCD LAGGM +E LKLR+S LLGVE++D E++ LF KY A G V ++S +LL P GWF L Q+R K RIS S+R+ + PGV + P+ + FP SL+GFKWDV KLV KLK K+ E A+G AGY FLAACK+FR E+P R+G I+ +FR VV KF + D E + LF+ L PG G ++ I +VR L P DY SWF+TR+STDM G+ P++VVLQA++MN +W + ++EDKIREK+HER GGT NL++VQA Y LF DGRN G+T++ F+A +HDKFA++L+ +VD +FR++DP+ TG+LD++ FV+RL+ A PEPWF+ R++Y+F RAP K+D M A WKRT W+ E L K++AKSNQDGGRFAFKSAVNL+RSANPDHLD ++ R A K VVFR+FDIVMDD L+D++F+++ T K+ +H+LV+ LLP DGSHHLVPKT Q ATK LL K+F MTGKRR++++LNG+G
Sbjct: 2 VESQFALALTVEEMVALQTRYPGNQPGTVDFLQFAEALSKTPQYGLDRTRGCFNFLPASKGNRDLQGLERDMRQKITDRLHLAGNYQYQSAYRMLCDANYQLAGGMGREDLKLRVSELLGVEINDREVDALFSKYKG-ANGLVDVRSMVRRLLQPAPEDGWFMLSAQLRADACKEAETRISESARFKHTPGVVAQDPVPTNEEFPASLRGFKWDVNKLVQKLKCKINEHAQGHAGYLFLAACKIFRHELP--ERKGDMITAREFRDVVRAKFSLVCDEQGVTAAHXXXXXXXXXXECIDLFEMLEPGCGGSMPITELVRRLVPRDYIERSWFSTRDSTDMPGYEHGKPDKVVLQAQEMNKH-NWTVDILEDKIREKLHERSGGTGNLYQVQATYRLFLDGRNNGVTRERFKAHLHDKFAILLTDDEVDALFRRHDPENTGQLDLYKFVMRLVGVQAPPEPWFQGRESYDFRCGRRAPHKEDLMGAPEWKRTKWSLHHLEQELIKKMWAKSNQDGGRFAFKSAVNLLRSANPDHLDRTSFTRAAAKMVVFRQFDIVMDDEWMXXXXXXXXXXXXXLVDQLFAKYADPRTDKISIHKLVRTLLPPAFDGSHHLVPKTSAQQAATKTLLHKVFEMTGKRRDIVNLNGAG 643
BLAST of mRNA_P-littoralis_Contig152.36.1 vs. uniprot
Match: A0A3F2RPW7_9STRA (EF-hand domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RPW7_9STRA) HSP 1 Score: 65.5 bits (158), Expect = 9.980e-8 Identity = 55/219 (25.11%), Postives = 103/219 (47.03%), Query Frame = 1
Query: 466 IEKKIMHKLEDRCEVAGNYQYQWARRILCDPTSTLAGGMSKEQLKLRLSGLLGVELSDGEMNVLFKKYADPATGRVHMQSFATQLLAPDNSSG--WFFLENQMREKVVTNRISPSSRYHNRP--GVESYKPLDNMFPHSLKGFKWDVGKLVAKLKVKLREQARGIAGYQFLAACKLFRAEVPPNRRQGGRISVEDFRRVVEYKFGMKLDPGEILALFDF 1110
+E+K+ K++++ ++AGN+ YQ A R+L G+ + +L G+ L D E+ +LF KY + G + +Q F ++L PD + G WF + E+ T R+ +R+ G+ S ++N S W + L +++ K+ ++ Q+ A K+ R+ R QG I + + ++ KFG+ ++ LF F
Sbjct: 55 VERKLQEKIQEKTQIAGNFVYQQAYRLL---EGNRGEGIDFPSFREQLRVKFGIILDDSELQLLFDKYDEDGNGTIDLQEFIRRVLPPDYNYGRQWFEVSQLESEERAT-RLKNEARHEFLACQGLVSEHEVNNTGDTS----HWTIETLKKQIQAKVVQKTPS-GEDQYRRAFKMLRS----GRDQG--IMMNGLQFNLKTKFGIYASDEQMRQLFSF 258 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig152.36.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig152.36.1 >prot_P-littoralis_Contig152.36.1 ID=prot_P-littoralis_Contig152.36.1|Name=mRNA_P-littoralis_Contig152.36.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=1267bp LTHAAVPTHAHTTALPNSMSFGRPASSSGTHSSHGGSRKAAISAAQFVPRback to top mRNA from alignment at P-littoralis_Contig152:144840..160495+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig152.36.1 ID=mRNA_P-littoralis_Contig152.36.1|Name=mRNA_P-littoralis_Contig152.36.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=15656bp|location=Sequence derived from alignment at P-littoralis_Contig152:144840..160495+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig152:144840..160495+ >mRNA_P-littoralis_Contig152.36.1 ID=mRNA_P-littoralis_Contig152.36.1|Name=mRNA_P-littoralis_Contig152.36.1|organism=Pylaiella littoralis U1_48|type=CDS|length=3801bp|location=Sequence derived from alignment at P-littoralis_Contig152:144840..160495+ (Pylaiella littoralis U1_48)back to top |