mRNA_P-littoralis_Contig152.22.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig152.22.1
Unique NamemRNA_P-littoralis_Contig152.22.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig152.22.1 vs. uniprot
Match: A0A6H5K2Z8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2Z8_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 1.720e-14
Identity = 77/227 (33.92%), Postives = 100/227 (44.05%), Query Frame = 2 
Query:  542 MPRAFGSGDDSPHEDATTRRAGXXXXXXXSDSFAGVMRALLK--SSPSXXXXXXXAE-------------KVVWQPRTALDLSGHSFSKALKAEISRSKQQSREARAAKKCSEMQRTTXXXXXXXXXXXXSVSSRAYTKPSWWAKNGGRDLGDAALSRVSPTSTLPPSPMWLHLDGAPLGSESGCRDESGADGVIDLQQRHNRQYPGSVCGSRSHDEGLNGSLAVGV 1177
            +PR  G+    P    ++ R+          +FAGV+RALLK  SSP+        E                WQPRTALDLSGHSFSKALKAEI+RSK++    + +K  S                  S SS    K SWW K   ++  ++  SRVS TST+P SP  LH                        QQ   ++ PG  C +RS  +    SLAVG+
Sbjct:   36 IPRRKGN---KPSHTGSSSRSHENERAASGKTFAGVLRALLKPSSSPADASAGSGDEGDGEAPPVGRSGVAGGWQPRTALDLSGHSFSKALKAEINRSKEKKMALKKSKTRS------------MNNLGSSSSSNLAVKDSWWEK---QESEESWFSRVSSTSTIPASPPELH------------------------QQHQQQRKPGPGCHARSFGDLDEMSLAVGL 220
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BLAST of mRNA_P-littoralis_Contig152.22.1 vs. uniprot
Match: D8LRG6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRG6_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 2.110e-5
Identity = 38/70 (54.29%), Postives = 43/70 (61.43%), Query Frame = 2 
Query:  635 SFAGVMRALLK--SSPSXXXXXXXAEKVV--------------WQPRTALDLSGHSFSKALKAEISRSKQ 796
            +FAGV+RALLK  SSP+        E                 WQPRTALDLSGHSFSKALKAEI+RSK+
Sbjct:   63 TFAGVLRALLKTSSSPADASAGSGDEGEEGEAPPVGRSGVAGGWQPRTALDLSGHSFSKALKAEINRSKE 132
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig152.22.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K2Z8_9PHAE1.720e-1433.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRG6_ECTSI2.110e-554.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig152contigP-littoralis_Contig152:87964..94178 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2573
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-18_004460.1
Cds size720
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789726.569655-UTR-P-littoralis_Contig152:87963..893471680789726.569655-UTR-P-littoralis_Contig152:87963..89347Pylaiella littoralis U1_48UTRP-littoralis_Contig152 87964..89347 -
1680789726.611157-UTR-P-littoralis_Contig152:93709..941781680789726.611157-UTR-P-littoralis_Contig152:93709..94178Pylaiella littoralis U1_48UTRP-littoralis_Contig152 93710..94178 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789726.5799844-CDS-P-littoralis_Contig152:89347..897641680789726.5799844-CDS-P-littoralis_Contig152:89347..89764Pylaiella littoralis U1_48CDSP-littoralis_Contig152 89348..89764 -
1680789726.5932693-CDS-P-littoralis_Contig152:90713..909891680789726.5932693-CDS-P-littoralis_Contig152:90713..90989Pylaiella littoralis U1_48CDSP-littoralis_Contig152 90714..90989 -
1680789726.6025527-CDS-P-littoralis_Contig152:93682..937091680789726.6025527-CDS-P-littoralis_Contig152:93682..93709Pylaiella littoralis U1_48CDSP-littoralis_Contig152 93683..93709 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig152.22.1prot_P-littoralis_Contig152.22.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig152 89348..93709 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig152.22.1

>prot_P-littoralis_Contig152.22.1 ID=prot_P-littoralis_Contig152.22.1|Name=mRNA_P-littoralis_Contig152.22.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=240bp
MPCGMIATERGMGDGNDSAGNSFHMPRAFGSGDDSPHEDATTRRAGAASS
SSSSDSFAGVMRALLKSSPSPSPSPSPAEKVVWQPRTALDLSGHSFSKAL
KAEISRSKQQSREARAAKKCSEMQRTTTNTTTTTTTTSTSVSSRAYTKPS
WWAKNGGRDLGDAALSRVSPTSTLPPSPMWLHLDGAPLGSESGCRDESGA
DGVIDLQQRHNRQYPGSVCGSRSHDEGLNGSLAVGVGFQ*
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mRNA from alignment at P-littoralis_Contig152:87964..94178-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig152.22.1 ID=mRNA_P-littoralis_Contig152.22.1|Name=mRNA_P-littoralis_Contig152.22.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=6215bp|location=Sequence derived from alignment at P-littoralis_Contig152:87964..94178- (Pylaiella littoralis U1_48)
AGAGACAAACAATTACGCCGCATGTTCCACTTCCTCTCTACCTTTTTTTT
TTACTGCAGCTCACCCGTATGAACGTATGAACACAACAACGACAACACCC
CGGGCATTCCCACTCGCCATACTACACTCCTTGCTACGTTCGCAATCCCC
CAAGAACAGCAAGGTCGGCGAACTAGCTAGCTAGGAAGCCAGCCAGCCAC
CCGTTGAGGCGCGTGTGCCTGCTGCTGAACGCCAGGCTTTCTTTCTGGTG
TGCTCTTCTTGCCCCCCGCAGATCTCCTTGGAAGTACAAATTCCAAAACA
AACTTCAAACTTCAGCACCGAACAGACACGATCACGAGCGATCGACAGGG
GGTTCGATCCGTTCGAGCAGGAGGAGCAGCTGCCTCCTCGGTGACAGCAG
TTAGTTCGTCCTCACACCAAGGACCCCGATCAAGACAGAGCAGTGAATAT
CGTTACTAGCTCCGGAGTGATGCCGTGCGGAATGATTGCGACCGAGGTGA
GAACCCCCGGGGTTGATTGGCGTTGTGTTCGCGTCCCATAATATCGCACC
GTCAAACCTACCATATCACACCGCCTAGCGGAATCAACAACACACACTTC
TTACGAGGATGACACAAAACGTCCACGTGCTTCATGTCATGACCTCAACT
CTTGATATTTTATAAGGGGTCTCAAATGGTCTTCTTGTCGCCCTTCCTCA
GCGGAGCTTCGACCACATGTGTCACCTACCTGCTGAGTTTGTCATATATA
TGTAGACGTAGGGTACTTACACCTCGGTGTGCGTCGTTAGTCTGCCGCTA
TGATGATAGATCCCTCCCTCTCGGGGCAAGACGAACAACACCACGCTCCT
GTATACCGAAGTGACTTGAGGGCTTCTCTTTCCCATACATGCATACGACA
GCAAAGTATTCCGTACCCCTCCCATACACACAGCAAAAGTGTGGATATGA
TTCAAATCATACAACATACATACCTACGTAGTATGTTCGTACGTGTGATC
ATCTCATGGCGGTGTTTCTCAGTTCTCGCACACCGGAAGAAGAGTATTGC
TGCGCAAGTATTGCTTCCTAGTTTCGCTTGCGTTATCCTTGTTGTCTCGC
ATGGTTGTAGATCGCGAAAGAAGAGAGAAAGCGAGGAGAGGCAGTGTCTT
TTTTCCGTTTCGTCTTTTTTTTGCAAAACGGCGGTCCATTTTATTATCGG
ATAATAATACTTCGAGTGTACAACTATCGAACGCGAAGCATCTAACAGCA
GCCCTGACATGTACGTACACTGCCATATCTTTCAGCAGTAAGTCGTGTGT
GTGCACATAAATGCACCGTACGTAATATATTGTGTCGAATCAGGCCACAG
CTTTGCCGAAGGGCCTTGTGACATGAGCAGGTCCTAGGCAATAGTATTAC
ATCGCGGAGAGGTGGCAGGCAGAAGTGCCGAAGGAGATCCTGGGCGTGTG
CAGTGTAAATCATACTGCTGTACATACATCCATTACTGTAGCATCCCGAA
AACTTATCCCTAATTCCCCGCTTCGCACGATGTTCGATATTGGAACTCAA
AATCCTCGTAAATTTAGCGGAATTTTACAGCCCCCCAACACAACAGCAGC
GTCCTATGGTACAGCAGCAACAGCACAGCAGTGTTACTCTGTCGCCCTGC
GTGTGAGCTTGCCTCGTAGCACTTTCGGCTGACTACAACTGTACCAGCGT
CCAGTCGGAATGTACTTCGTGCTCGCCCGCTGCTTCTCGGCCTTCGTGTT
CGTAAACTAGCACTGCTGCCGTTCTGTATTCTGTACTTCAACACAAGACT
GCTCGTTGTTTTCTTTTTATCCCTCGCTATGATGATAATGACCCCGGCTG
GTGCACCAACTTCATCCCGAAAGTGGCCGGTGACATCGTGCCCAGAACAA
TCGGTGGTTCAGTCGGTCATCCACCAAACCTTCTGACTTTCACGCGTGAG
TTCGAATCTCAGTGCAGTAACACGATCTGGGTTTTTTTCTCTCACATTGC
GCGTGAAAGTGGAAAGCGATCAATTCGTGTGAGTAAACAAAATTCGATCG
TACCATCGACGAGGGAAAGAGATTGCTGTCGCCTTTCTCGCGATCTAAGC
TCGACCAAAAAGGCAAGCACCGCAGAGAAAAGTGGAGGAAAAAAAAAACT
CCTGTGTTGACTTCCCCCTGTGTGACCCCGGTAGGAGCGTCTACCTACCC
GAGGGGTGTAGAGTGGCGTCCAATAGAAGGGATGACAACACACACAACAA
CACACACATGATATCTAGCGGAATTGTGTTTGTACACGGATTATTTTACT
GTCTCCATCGTATGATACGATATCCGTTCACTGGGTTCCGGTCGCCCCGG
TGAATCAGGTGGTCATCCACGCAACCTTCTGACATCCACGCGTGAGGTCG
AATCCCAGTGCAGTAACACGATCTGGGTTTTTTTCTCTCACATTGCGCGT
GAAGGTGGAAAGCGATCAATTCGTGTGAGTAAACAAATTTCGATCGTACC
ATCGACGAGGGAAAGAGATTGCTGTACCCTTTCTCGCGATCTAAGCTCAA
CCAAAAAAGCAAGCACCGCAGAGAAAAGTGGAGGAAAAAAAAAACTCCTG
TATTGACTTCCCCCTGTGTGACCCCGGTAGGAGCGTCTACCTACTACCCG
AGAGGTGTAGAGTGGCGTCCAATGAAAGGGATGACAACACACACACTTTC
CACTATCCTCCCAATACCAGTACTTGGAAAAAAACACAGTTGTTGTGTAA
CCCCGGCCCATGAACCTGCAGCGACTTATTCCTGAAAGGTCAACACAGAC
GGATGACAGCCAGTACACACACATATAAGTGCACAAGCACACAGCGGACA
CACGGCACATCTCTCTGGAGGACAAAATTAAAAAGTACGCTCCAAAAGAA
CAAAACACTGCTGTATTTTACTTCGTACAAGTGTATTTTGTTGGGTTTTT
TTACTTTCGCGCATATCACATACCTGGCACGATGTATACGAAATCTAATC
GACCGATCCCCGACGCTGCTGCCCTCAAGAGTTAAAAATTATCCGTACTT
TGTTGTAATATCTTTGTACATGAGAAAAATAAAAAATAAAAATAAAAGTT
CACCTCGACCCCCCCCCCCCTCAAAACTCCCGGCCTACCCCTACCCCACC
GTTGTGTTTGTTCTCGTGCGCGGCTGTTCTTTGTCGCAGAGAGGTATGGG
AGACGGCAACGACAGCGCGGGTAACTCGTTCCACATGCCCCGGGCGTTCG
GCAGCGGGGACGACTCCCCCCACGAGGACGCGACGACGAGAAGAGCAGGA
GCTGCTTCTTCTTCTTCTTCCTCGGACTCATTCGCTGGAGTAATGCGAGC
CCTGTTGAAGTCCTCCCCGTCACCGTCACCGTCACCGTCTCCTGCCGAGA
AGGTGGTCTGGCAGCCGAGAACTGCTCTGGACCTCAGCGGTCATTCGTTC
AGCAAAGCTTTGAAGGTGCGTTGCGCACCGTATCCCAGACTGCCGTAGAC
AGCAGCAGCAGCAGCACTCGCTTCATCTTCGTACGCATATCAATGTCTAC
ACTGTAGCAGTTGTAGTGCGTGTCTGTGTGTGTGTGTTTTAGTCCCATTG
ATTCCGGGCACCATTCCACACCTTTCGGTATAAAGTGGGTGCACCAGCCC
GGGTCAAACAGTGAAGGAAGGTCACACACGAGTTTATTATTCATACCAGT
AGATATTCCTCCACCTACTTTGCGTCAGCAATGCTTTGTCTTTTTTGCCT
TTTTGAGCTTTGTATCGCGAGAAGGGTTCAAACGTCCCTTAACCTTGTCA
ACGGTTGAGTCGAATCACAAAGGTTCATTATTCGAAAAGAAGACAGGCGC
CATGTTGACTGCTTCAGTTTTTTTGCATGCTAGGTATCTCATGTATACGT
ACAGGATAAGCATCATATCATACTCGAAGTATTGATCAATTTTTACGCCC
ACTGCAGCTGCTGCGTGTTGTTTTTCACCTGGTACAAATGTAATGTTGCA
CGTTAATTGTTCTCGCCCGGGTAGGCACAGCAGTTCGGAATCGTGATGGG
CAGAGTCACAATCCCCAGACCTCCTGTTTCATAGTGCCGAGCGAAAGGCC
GAGTAGAGTACCGTCACAATGGCCCGGCCCAACCGCGGTGCCCCCCTTGG
CGTGCGTACTGTCGTCGCAATCAACTACAGTAAGTCGACGCCCGCACTAG
GAAAACACTATTCAAGGGGAAAACACAGCACTGTTCGTACTTCGTGTATC
ATCCTCTCCCCAGGACTCGACTGCTGCCTATAGCTGTATGAGGTTCCCGT
CTCGTACTCGCTTATGACTCGGAGCACTCCTTCCTCTCTTAAGAACCTAT
CATACGGTAACGACTCGCCCTCCTCTCCCCTCACACTTCACATGCCTCGC
AACGCCCCCAACAGGCTGAGATTAGCCGATCAAAGCAGCAGAGCCGGGAA
GCCCGGGCCGCCAAAAAATGCAGCGAAATGCAACGCACGACCACCAACAC
GACCACCACCACCACCACCACTAGTACGAGCGTCAGCAGCAGGGCCTACA
CGAAGCCCTCCTGGTGGGCGAAGAACGGAGGCCGGGACCTAGGCGATGCG
GCGCTCTCGCGCGTGTCCCCGACGTCCACCCTCCCCCCGTCCCCGATGTG
GCTACACTTGGACGGGGCCCCGCTCGGTTCCGAGAGCGGCTGTCGCGACG
AAAGCGGAGCCGACGGTGTCATCGACCTTCAGCAGCGTCACAACAGGCAG
TACCCGGGCTCGGTCTGCGGATCGAGGTCTCACGACGAAGGCTTGAACGG
TTCGCTCGCGGTCGGGGTGGGCTTTCAATAGCGCGGGCACCATGATGATG
AACAAACACTTTTATGGTTTATGCGTTTATTTTTTGAAGCTAGTGTGAGA
GCAATGACGTTATGTTGGTAATGGTGGAGAACGAGTAAATACCCGATACA
CTTAGTCTGACTGCTGCTTCTGCTGTTCGCGTTGACGGGATACCCGAGGA
GGGGGGGGGGGGCAGATGGGAAATATATCTGTGAAATGGATACCGGTACG
GGCTGGCTGTAGAGAAGAAGGGCACCACCCCCGCACCCCCCTACATTGCG
ACAAGAAGTTTCCGCTTGTGTTTGGTTTGATGGTTGGGAATGGTGGACGC
TGCCACTGCTGCTGTTATGTTGGTACAACAACGTCAGTCATTATTGAAAT
ATTTGGGAGAGGTTGGGAGAGGAGTCGGGGTGTGCTGCGGGGGGGAATAT
GGTTTGTTTTGTATCAAACGAGTCTGGTGTTTTGGTACGTACAATACAAT
TTTACGGTGCAACACGCGCGTTGCGTTAGAATTGATTTTACGGCGGGCGC
GCCCGGGCGATGGCGGGGACGAGAGTAAAAAAAACGAGCAATGGCGTTCG
CGTTAGTTGCTTTTTCGTCCCAGCACACGAGATCGCGCCTGGTGGGAGAT
GGGAGGGGGTGCGCGTGGTTCTTGTGTAACCGAATGTGTCTAGTACATAT
CAATAGCGTCACCCAGTGGGTGAAAAGAGAGGGGAGACATCCTCAGGTTG
CGACGGGCGGCTGTATCGTCCTGGTACCTACACGCGAGTGTGAAAAAAGG
GACAGCACATGCAGTACGTACAAACCTTTTAACTCGCAGTCCCCGCCCAC
GACGATAGCACGCGTCCTCTGCCCCTTGATGCGAAAAGCTCTTCGACGAA
AGTTTCAATAGACGAGCTGGTTGCATTGTGCACGCACATCCTCCGAGTTC
TTCTTTTTTGAGAGGAGATATTGTCTGATGTTTCTCGCCGCGCGCGCGGT
GTTTGTTTTTTCTTTATTTTCGTTTTTGCTGTGCTGCTGCTATAGAGCTT
GAGGGACGGGGGGAGGGGCGAGCTGCGACTGACGGGCAGCACAGCGCAGA
AAGAGAACAGCGTTTAGCTGCCCGCCCCGCAGCTTTCCTATCGGTCAGCG
TTTATGATGTTTTCGGGGGTTGGCTTGTATCCATTCACAGCAGCTGCTGC
CCGTTCGTTTTTTGTTTATGTGTGTGTTGTGCATAGAAGTGGAGCCCGAG
CGGTTCTCTGACGACACACGTTCCTTCGTCTGGTACAAACACGGAGGCGT
GAGACTTGTTGTGACTTCTTTACGCGTTTGTTCCCTCGTCTGGTGCGCAC
ATCATGCAGGCGTGGGTCGTCGTTGTGCTTTTTTTTATAGCGTTGATAAG
TGCAGGGGTCCGGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig152:87964..94178-

>mRNA_P-littoralis_Contig152.22.1 ID=mRNA_P-littoralis_Contig152.22.1|Name=mRNA_P-littoralis_Contig152.22.1|organism=Pylaiella littoralis U1_48|type=CDS|length=720bp|location=Sequence derived from alignment at P-littoralis_Contig152:87964..94178- (Pylaiella littoralis U1_48)
ATGCCGTGCGGAATGATTGCGACCGAGAGAGGTATGGGAGACGGCAACGA
CAGCGCGGGTAACTCGTTCCACATGCCCCGGGCGTTCGGCAGCGGGGACG
ACTCCCCCCACGAGGACGCGACGACGAGAAGAGCAGGAGCTGCTTCTTCT
TCTTCTTCCTCGGACTCATTCGCTGGAGTAATGCGAGCCCTGTTGAAGTC
CTCCCCGTCACCGTCACCGTCACCGTCTCCTGCCGAGAAGGTGGTCTGGC
AGCCGAGAACTGCTCTGGACCTCAGCGGTCATTCGTTCAGCAAAGCTTTG
AAGGCTGAGATTAGCCGATCAAAGCAGCAGAGCCGGGAAGCCCGGGCCGC
CAAAAAATGCAGCGAAATGCAACGCACGACCACCAACACGACCACCACCA
CCACCACCACTAGTACGAGCGTCAGCAGCAGGGCCTACACGAAGCCCTCC
TGGTGGGCGAAGAACGGAGGCCGGGACCTAGGCGATGCGGCGCTCTCGCG
CGTGTCCCCGACGTCCACCCTCCCCCCGTCCCCGATGTGGCTACACTTGG
ACGGGGCCCCGCTCGGTTCCGAGAGCGGCTGTCGCGACGAAAGCGGAGCC
GACGGTGTCATCGACCTTCAGCAGCGTCACAACAGGCAGTACCCGGGCTC
GGTCTGCGGATCGAGGTCTCACGACGAAGGCTTGAACGGTTCGCTCGCGG
TCGGGGTGGGCTTTCAATAG
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