mRNA_P-littoralis_Contig1515.11.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1515.11.1
Unique NamemRNA_P-littoralis_Contig1515.11.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig1515.11.1 vs. uniprot
Match: A0A6H5J557_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J557_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 8.280e-20
Identity = 39/75 (52.00%), Postives = 52/75 (69.33%), Query Frame = 1 
Query:   46 SKENSRHLAMVQNAAVYYQCLVTKRKIGTTNTEGRDAHAKQNYLDHTVPGFFAWWNKSCKLPIPTWLTPKLMGQS 270
            +K+  +HL+++QNAA YYQCLVTKR+ GT +T+ RDAHA+ NY + TVP F  WW        P+WLT  LMG +
Sbjct:   24 TKQTPKHLSLIQNAAAYYQCLVTKREAGTMSTQQRDAHARTNYKNFTVPSFLCWWKTVVIQTPPSWLTQDLMGMT 98
[Close]
BLAST of mRNA_P-littoralis_Contig1515.11.1 vs. uniprot
Match: A0A6H5KNK2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNK2_9PHAE)

HSP 1 Score: 48.9 bits (115), Expect = 6.880e-6
Identity = 19/33 (57.58%), Postives = 28/33 (84.85%), Query Frame = 1 
Query:   46 SKENSRHLAMVQNAAVYYQCLVTKRKIGTTNTE 144
            +K+  +HL+++QNAA YYQCLVTKR+ GT +T+
Sbjct:   24 TKQTPKHLSLIQNAAAYYQCLVTKREAGTMSTQ 56
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1515.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J557_9PHAE8.280e-2052.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNK2_9PHAE6.880e-657.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1515contigP-littoralis_Contig1515:7245..7514 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size272
Hectar predicted targeting categoryother localisation
Exons1
Cds size252
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789725.2236214-CDS-P-littoralis_Contig1515:7244..74961680789725.2236214-CDS-P-littoralis_Contig1515:7244..7496Pylaiella littoralis U1_48CDSP-littoralis_Contig1515 7245..7496 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789725.232934-UTR-P-littoralis_Contig1515:7496..75141680789725.232934-UTR-P-littoralis_Contig1515:7496..7514Pylaiella littoralis U1_48UTRP-littoralis_Contig1515 7497..7514 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1515.11.1prot_P-littoralis_Contig1515.11.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1515 7245..7496 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1515.11.1

>prot_P-littoralis_Contig1515.11.1 ID=prot_P-littoralis_Contig1515.11.1|Name=mRNA_P-littoralis_Contig1515.11.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=84bp
MLLTTIGNCSKENSRHLAMVQNAAVYYQCLVTKRKIGTTNTEGRDAHAKQ
NYLDHTVPGFFAWWNKSCKLPIPTWLTPKLMGQS
back to top

mRNA from alignment at P-littoralis_Contig1515:7245..7514-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1515.11.1 ID=mRNA_P-littoralis_Contig1515.11.1|Name=mRNA_P-littoralis_Contig1515.11.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=270bp|location=Sequence derived from alignment at P-littoralis_Contig1515:7245..7514- (Pylaiella littoralis U1_48)
ACTAATGACCTCTCGGCTATGCTGCTCACAACCATCGGGAATTGTTCCAA
GGAGAACTCGAGGCATCTAGCGATGGTTCAAAACGCGGCTGTGTACTATC
AGTGCCTCGTCACGAAGCGCAAGATCGGCACCACCAACACCGAAGGACGG
GATGCGCACGCAAAGCAGAACTACCTCGACCACACCGTTCCTGGTTTCTT
TGCCTGGTGGAATAAGTCCTGCAAGCTGCCGATTCCTACGTGGCTGACGC
CGAAGCTCATGGGCCAGAGC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig1515:7245..7514-

>mRNA_P-littoralis_Contig1515.11.1 ID=mRNA_P-littoralis_Contig1515.11.1|Name=mRNA_P-littoralis_Contig1515.11.1|organism=Pylaiella littoralis U1_48|type=CDS|length=252bp|location=Sequence derived from alignment at P-littoralis_Contig1515:7245..7514- (Pylaiella littoralis U1_48)
ATGCTGCTCACAACCATCGGGAATTGTTCCAAGGAGAACTCGAGGCATCT
AGCGATGGTTCAAAACGCGGCTGTGTACTATCAGTGCCTCGTCACGAAGC
GCAAGATCGGCACCACCAACACCGAAGGACGGGATGCGCACGCAAAGCAG
AACTACCTCGACCACACCGTTCCTGGTTTCTTTGCCTGGTGGAATAAGTC
CTGCAAGCTGCCGATTCCTACGTGGCTGACGCCGAAGCTCATGGGCCAGA
GC
back to top