prot_P-littoralis_Contig1511.3.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig1511.3.1
Unique Nameprot_P-littoralis_Contig1511.3.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length87
Homology
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BLAST of mRNA_P-littoralis_Contig1511.3.1 vs. uniprot
Match: A0A6H5K4R3_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4R3_9PHAE)

HSP 1 Score: 138 bits (348), Expect = 3.740e-36
Identity = 80/83 (96.39%), Postives = 82/83 (98.80%), Query Frame = 0 
Query:    1 QAEREEAERIFGEEQLEQXXXXXXXXXXXXRQAEESDQACWKCGEVDHRSDGDLIILCDGADCSGASHVGCCDPPLQGVPNGD 83
            QAEREEAERIFGEEQLE XXXXXXXXXXXXRQAEESD+ACWKCGEVDHRSDGDLIILCDGADCSGASHVGCCDPPLQGVP+GD
Sbjct:  505 QAEREEAERIFGEEQLEXXXXXXXXXXXXXRQAEESDRACWKCGEVDHRSDGDLIILCDGADCSGASHVGCCDPPLQGVPDGD 587
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BLAST of mRNA_P-littoralis_Contig1511.3.1 vs. uniprot
Match: A0A812TNR4_9DINO (Baz2a protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812TNR4_9DINO)

HSP 1 Score: 50.8 bits (120), Expect = 2.110e-5
Identity = 22/46 (47.83%), Postives = 29/46 (63.04%), Query Frame = 0 
Query:   40 CWKCGEVDHRSDGDLIILCDGA--DCSGASHVGCCDPPLQGVPNGD 83
            C  CG  DH    + ++LCDG    C G +H+GCC+PPL+ VP GD
Sbjct:  164 CSVCGRSDHP---ETLLLCDGGLPGCEGTTHLGCCNPPLKAVPEGD 206
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1511.3.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K4R3_9PHAE3.740e-3696.39PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
A0A812TNR4_9DINO2.110e-547.83Baz2a protein n=1 Tax=Symbiodinium sp. KB8 TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 2..39
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..34
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 3..84
e-value: 2.7E-10
score: 42.1
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 30..82

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1511contigP-littoralis_Contig1511:14307..14567 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1511.3.1mRNA_P-littoralis_Contig1511.3.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig1511 14307..14567 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig1511.3.1 ID=prot_P-littoralis_Contig1511.3.1|Name=mRNA_P-littoralis_Contig1511.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=87bp
QAEREEAERIFGEEQLEQEQREEEEAAERERQAEESDQACWKCGEVDHRS
DGDLIILCDGADCSGASHVGCCDPPLQGVPNGDVSI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR011011Znf_FYVE_PHD