mRNA_P-littoralis_Contig1511.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1511.2.1
Unique NamemRNA_P-littoralis_Contig1511.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1511.2.1 vs. uniprot
Match: A0A6H5K8U3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8U3_9PHAE)

HSP 1 Score: 321 bits (822), Expect = 5.080e-105
Identity = 168/206 (81.55%), Postives = 179/206 (86.89%), Query Frame = 2 
Query:    8 VGVDVRGDGGKRGVDSPSSVMGTTDSYTSFTIRVPDESLRCRLVRGRRYRAGTPGGVSRQIFRRHLAALHQVLAEINPPPEPPVCRWTNKSVVFGAVYLAAAIACALAYGFTIAFAVFVATSIWAAVASLLFPVDHARAEAVSVDEPPITCLEVDRYFMGGRRRAPCRKTRRRHGRRRGNRGYLKKVSAYHAEPSSGRPGLWSVRG 625
            VG++   DGG+ GVDSPSSVMGTTDSY SFTIRVPDESLRCRLVRGRRYRAG PGGVSRQIFRRHLAALHQVLAEI+PP   PVCRWTNK+V+ GA+Y AAAIA A+ YGF  A A FVAT IWAAVASL+FPVDH R+EAV VD+P IT LE DRYFMG R R PCRKTRRRHGRR GNRGYLKKVSAYHAEPSSGRPGLWSVRG
Sbjct:  305 VGMEAAADGGESGVDSPSSVMGTTDSYASFTIRVPDESLRCRLVRGRRYRAGLPGGVSRQIFRRHLAALHQVLAEIDPPRVSPVCRWTNKTVMVGAMYPAAAIASAVGYGF--ATAAFVATCIWAAVASLMFPVDHTRSEAVGVDKPLITRLEADRYFMGDRHRVPCRKTRRRHGRR-GNRGYLKKVSAYHAEPSSGRPGLWSVRG 507
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BLAST of mRNA_P-littoralis_Contig1511.2.1 vs. uniprot
Match: A0A6H5K4R3_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4R3_9PHAE)

HSP 1 Score: 337 bits (863), Expect = 2.150e-103
Identity = 172/206 (83.50%), Postives = 178/206 (86.41%), Query Frame = 2 
Query:    8 VGVDVRGDGGKRGVDSPSSVMGTTDSYTSFTIRVPDESLRCRLVRGRRYRAGTPGGVSRQIFRRHLAALHQVLAEINPPPEPPVCRWTNKSVVFGAVYLAAAIACALAYGFTIAFAVFVATSIWAAVASLLFPVDHARAEAVSVDEPPITCLEVDRYFMGGRRRAPCRKTRRRHGRRRGNRGYLKKVSAYHAEPSSGRPGLWSVRG 625
            VG++   DGG RGVD P SVMGTTDSYTSFTIRVPDESLRCRLVRGRRYRAGTPGGV RQIFRRHLAALHQVLAEI+PPPEPPVCRW NKSVV GAVYLAAA+              FVATSIWAAVASLLFPVDHARA+AV VD+PPIT LE DRYFMGGR R PCRKTRRRHGRRRGNRGYLKKVSAYHAEPSSGRPGLWSVRG
Sbjct:  231 VGMEAAADGGVRGVDRPPSVMGTTDSYTSFTIRVPDESLRCRLVRGRRYRAGTPGGVRRQIFRRHLAALHQVLAEIDPPPEPPVCRWANKSVVVGAVYLAAAVXXXXXXXXXXXXXXFVATSIWAAVASLLFPVDHARAQAVGVDKPPITRLEADRYFMGGRHRVPCRKTRRRHGRRRGNRGYLKKVSAYHAEPSSGRPGLWSVRG 436
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BLAST of mRNA_P-littoralis_Contig1511.2.1 vs. uniprot
Match: A0A6H5KZG6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZG6_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 1.530e-30
Identity = 67/119 (56.30%), Postives = 82/119 (68.91%), Query Frame = 2 
Query:   44 GVDSPSSVMGTTDSYTSFTIRVPDESLRCRLVRGRRYRAGTPGGVSRQIFRRHLAALHQVLAEINPPPEPPVCRWTNKSVVFGAVYLAAAIACALAYGFTIAFAVFVATSIWAAVASLL 400
            G  + SS  G   +YT F   +P ES RCRL+RGRRYRAGT  G+SRQ  RR  A++ Q+LA  +PPPEPP CRWTNKSVV GAVY+ + +A AL+ GF IA  +FV+  IWAAV   L
Sbjct:  297 GGHASSSPAGILFAYTGFAPGLPGESRRCRLIRGRRYRAGTSSGLSRQALRRTAASVRQILAMRHPPPEPPACRWTNKSVVLGAVYITSVMAPALSCGFAIAPIIFVSMLIWAAVGFFL 415
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1511.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K8U3_9PHAE5.080e-10581.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4R3_9PHAE2.150e-10383.50PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KZG6_9PHAE1.530e-3056.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1511contigP-littoralis_Contig1511:13286..13910 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size625
Hectar predicted targeting categorysignal anchor
Exons1
Cds size558
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789724.7881095-UTR-P-littoralis_Contig1511:13285..133521680789724.7881095-UTR-P-littoralis_Contig1511:13285..13352Pylaiella littoralis U1_48UTRP-littoralis_Contig1511 13286..13352 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789724.8011608-CDS-P-littoralis_Contig1511:13352..139101680789724.8011608-CDS-P-littoralis_Contig1511:13352..13910Pylaiella littoralis U1_48CDSP-littoralis_Contig1511 13353..13910 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1511.2.1prot_P-littoralis_Contig1511.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1511 13353..13910 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1511.2.1

>prot_P-littoralis_Contig1511.2.1 ID=prot_P-littoralis_Contig1511.2.1|Name=mRNA_P-littoralis_Contig1511.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=186bp
MGTTDSYTSFTIRVPDESLRCRLVRGRRYRAGTPGGVSRQIFRRHLAALH
QVLAEINPPPEPPVCRWTNKSVVFGAVYLAAAIACALAYGFTIAFAVFVA
TSIWAAVASLLFPVDHARAEAVSVDEPPITCLEVDRYFMGGRRRAPCRKT
RRRHGRRRGNRGYLKKVSAYHAEPSSGRPGLWSVRG
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mRNA from alignment at P-littoralis_Contig1511:13286..13910+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1511.2.1 ID=mRNA_P-littoralis_Contig1511.2.1|Name=mRNA_P-littoralis_Contig1511.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=625bp|location=Sequence derived from alignment at P-littoralis_Contig1511:13286..13910+ (Pylaiella littoralis U1_48)
TTGACAGGTTGGTGTGGATGTGAGAGGGGATGGCGGAAAAAGGGGGGTGG
ACAGTCCTTCTTCCGTGATGGGCACGACGGACAGCTACACGAGCTTCACG
ATTCGCGTGCCGGACGAGTCCCTCCGGTGCAGACTCGTGCGCGGCAGGCG
TTATCGCGCCGGGACACCCGGTGGCGTGAGTCGACAGATCTTTCGGAGGC
ACTTGGCAGCCCTCCACCAGGTCCTCGCCGAGATCAATCCACCGCCGGAG
CCACCTGTCTGTCGTTGGACCAACAAGTCGGTCGTGTTTGGCGCGGTGTA
CCTCGCTGCCGCCATAGCGTGTGCGCTCGCGTACGGTTTTACGATAGCTT
TCGCCGTCTTCGTGGCCACGTCCATCTGGGCTGCCGTCGCCTCCTTGTTG
TTCCCCGTCGATCACGCCCGCGCGGAAGCAGTCAGTGTCGATGAACCCCC
CATCACTTGCCTCGAGGTCGATCGGTACTTCATGGGTGGCCGGCGCCGAG
CACCTTGTCGCAAAACTCGTCGTCGCCACGGGAGGAGGAGGGGCAACAGG
GGATATCTCAAGAAGGTCTCCGCTTATCACGCAGAGCCCAGTTCTGGTCG
GCCCGGGCTATGGTCCGTCCGCGGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1511:13286..13910+

>mRNA_P-littoralis_Contig1511.2.1 ID=mRNA_P-littoralis_Contig1511.2.1|Name=mRNA_P-littoralis_Contig1511.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=558bp|location=Sequence derived from alignment at P-littoralis_Contig1511:13286..13910+ (Pylaiella littoralis U1_48)
ATGGGCACGACGGACAGCTACACGAGCTTCACGATTCGCGTGCCGGACGA
GTCCCTCCGGTGCAGACTCGTGCGCGGCAGGCGTTATCGCGCCGGGACAC
CCGGTGGCGTGAGTCGACAGATCTTTCGGAGGCACTTGGCAGCCCTCCAC
CAGGTCCTCGCCGAGATCAATCCACCGCCGGAGCCACCTGTCTGTCGTTG
GACCAACAAGTCGGTCGTGTTTGGCGCGGTGTACCTCGCTGCCGCCATAG
CGTGTGCGCTCGCGTACGGTTTTACGATAGCTTTCGCCGTCTTCGTGGCC
ACGTCCATCTGGGCTGCCGTCGCCTCCTTGTTGTTCCCCGTCGATCACGC
CCGCGCGGAAGCAGTCAGTGTCGATGAACCCCCCATCACTTGCCTCGAGG
TCGATCGGTACTTCATGGGTGGCCGGCGCCGAGCACCTTGTCGCAAAACT
CGTCGTCGCCACGGGAGGAGGAGGGGCAACAGGGGATATCTCAAGAAGGT
CTCCGCTTATCACGCAGAGCCCAGTTCTGGTCGGCCCGGGCTATGGTCCG
TCCGCGGA
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