mRNA_P-littoralis_Contig1511.1.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig1511.1.1 vs. uniprot
Match: A0A6H5K8U3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8U3_9PHAE) HSP 1 Score: 517 bits (1332), Expect = 4.800e-178 Identity = 286/415 (68.92%), Postives = 305/415 (73.49%), Query Frame = 2
Query: 125 ARRVQDVYCTPEGAMFVRLHNGGFRNNCGPISLLQRSMVRDGVPIPAIIEATHDELAADVRDALQRIRDATVSNSHGRDIFDGHSSDINDELLSFDDLVHNASAPIVTKPMWDAIMRFSHGYFDGRAVMGGSEALYLDGLVIVKLNSDGLLEPVDGSSTPIAEAKHLIFFDGHAHFEALVSLEELLAVTDDVEEAGVAAEKCEQEGVAVE*WGPRISKLGVEXXXXXXXXXXTRTFTVGLLDGAIDYAAGGGVRGAGDTTSSLLSTLLFACAILALLRIVVAFSRCIGDVVRAWMVGVEVTADGGERGVDSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPSSVMGTTDSYTSFTIRVPDESLRCRLVRGRRYRAGTPGGVSRQIFRRHLAALHQVLAEINPPPEPPVCRWTNK 1369
A++VQ VYCTP+GAMFVRL GGF NNCGP+SL+QR MV DG PIPAIIEAT+ ELA DV+DALQ IRDATVSNSHGRD+FDGHSSDI +E+LSFDDLVHNAS+PI+TKPMWDAIMR HGYFDGRAVMGG EAL LDGLVI +LN DGLLEPVDGS+TPIAEAKHLIFFDGHAHFEALVSLEELL VTD VEE+ PR LGVE LDGAI Y AGG AG+T SSLLS LFAC +LALLRIVV FSR IGDVVR MVG+E ADGGE GVDS PSSVMGTTDSY SFTIRVPDESLRCRLVRGRRYRAG PGGVSRQIFRRHLAALHQVLAEI+PP PVCRWTNK
Sbjct: 42 AKKVQRVYCTPKGAMFVRLRKGGFHNNCGPLSLIQRDMVGDGFPIPAIIEATNGELAGDVKDALQCIRDATVSNSHGRDVFDGHSSDIKEEILSFDDLVHNASSPILTKPMWDAIMRCPHGYFDGRAVMGGGEALDLDGLVIAQLNRDGLLEPVDGSTTPIAEAKHLIFFDGHAHFEALVSLEELLPVTDAVEESE-----------------PRTITLGVEEEGVAVP-----------LDGAISYVAGG----AGETASSLLSAHLFACVVLALLRIVVVFSRYIGDVVRTHMVGMEAAADGGESGVDS------------------------------PSSVMGTTDSYASFTIRVPDESLRCRLVRGRRYRAGLPGGVSRQIFRRHLAALHQVLAEIDPPRVSPVCRWTNK 394
BLAST of mRNA_P-littoralis_Contig1511.1.1 vs. uniprot
Match: A0A6H5K4R3_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4R3_9PHAE) HSP 1 Score: 478 bits (1230), Expect = 3.580e-150 Identity = 271/378 (71.69%), Postives = 282/378 (74.60%), Query Frame = 2
Query: 236 MVRDGVPIPAIIEATHDELAADVRDALQRIRDATVSNSHGRDIFDGHSSDINDELLSFDDLVHNASAPIVTKPMWDAIMRFSHGYFDGRAVMGGSEALYLDGLVIVKLNSDGLLEPVDGSSTPIAEAKHLIFFDGHAHFEALVSLEELLAVTDDVEEAGVAAEKCEQEGVAVE*WGPRISKLGVEXXXXXXXXXXTRTFTVGLLDGAIDYAAGGGVRGAGDTTSSLLSTLLFACAILALLRIVVAFSRCIGDVVRAWMVGVEVTADGGERGVDSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPSSVMGTTDSYTSFTIRVPDESLRCRLVRGRRYRAGTPGGVSRQIFRRHLAALHQVLAEINPPPEPPVCRWTNK 1369
MVRDGVPIPAIIEAT+ ELA DVRDALQ IRDATVSNSHGRDIFD HSSDINDE LSFDDLVH+ASA I+TKPMWDAIMR SHGYFDGRAVMGG EAL LDGLVIV+LNSDGLLEPVDGSSTPIAEAKHLIF DGHAHFEALVSLEE+L VT+DV+ VAVE W PR S LGVE LD IDYAAGG AG+T+SSLLS LLFACAILA LRI V FSR IGDVVR MVG+E ADGG RGVD P SVMGTTDSYTSFTIRVPDESLRCRLVRGRRYRAGTPGGV RQIFRRHLAALHQVLAEI+PPPEPPVCRW NK
Sbjct: 1 MVRDGVPIPAIIEATNGELAGDVRDALQCIRDATVSNSHGRDIFDEHSSDINDEPLSFDDLVHDASALILTKPMWDAIMRCSHGYFDGRAVMGGGEALDLDGLVIVQLNSDGLLEPVDGSSTPIAEAKHLIFHDGHAHFEALVSLEEVLPVTEDVD-------------VAVEEWEPRTSTLGVEEECVAVP-----------LDDVIDYAAGG----AGETSSSLLSALLFACAILAFLRIFVVFSRYIGDVVRTCMVGMEAAADGGVRGVDR------------------------------PPSVMGTTDSYTSFTIRVPDESLRCRLVRGRRYRAGTPGGVRRQIFRRHLAALHQVLAEIDPPPEPPVCRWANK 320
BLAST of mRNA_P-littoralis_Contig1511.1.1 vs. uniprot
Match: A0A6H5K159_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K159_9PHAE) HSP 1 Score: 354 bits (908), Expect = 2.550e-117 Identity = 199/295 (67.46%), Postives = 216/295 (73.22%), Query Frame = 2
Query: 128 RRVQDVYCTPEGAMFVRLHNGGFRNNCGPISLLQRSMVRDGVPIPAIIEATHDELAADVRDALQRIRDATVSNSHGRDIFDGHSSDINDELLSFDDLVHNASAPIVTKPMWDAIMRFSHGYFDGRAVMGGSEALYLDGLVIVKLNSDGLLEPVDGSSTPIAEAKHLIFFDGHAHFEALVSLEELLAVTDDVEEAGVAAEKCEQEGVAVE*WGPRISKLGVEXXXXXXXXXXTRTFTVGLLDGAIDYAAGGGVRGAGDTTSSLLSTLLFACAILALLRIVVAFSRCIGDVVRAWMV 1012
+RVQ VY T +G MFV + N G N+CGPISLLQRSMVRDGVPIPAIIEAT+ ELA DV+DALQ IRDATVSNSHGRD+FD HSSDI DE+LSF+DLVHNA API+TKPMWDA MR HGYFDGRA+MGG EAL LDGLVIV+L+SDGLLEPVDGSSTPIA AKHLIFFDGHAHFEAL SLEELL +TDDV+ VAVE W PR LGVE LDGAI YA SSLLS LLFAC ILALLR+VV F R IGD+VR MV
Sbjct: 29 KRVQRVYYTLDGKMFVAMSNSGSSNSCGPISLLQRSMVRDGVPIPAIIEATNGELAGDVKDALQCIRDATVSNSHGRDVFDEHSSDIKDEILSFNDLVHNAEAPILTKPMWDAFMRCPHGYFDGRAMMGGGEALDLDGLVIVRLDSDGLLEPVDGSSTPIAAAKHLIFFDGHAHFEALASLEELLPMTDDVD-------------VAVEEWEPRTITLGVEEEGVAVP-----------LDGAISYA------------SSLLSALLFACVILALLRVVVVFFRYIGDIVRTHMV 287
BLAST of mRNA_P-littoralis_Contig1511.1.1 vs. uniprot
Match: A0A6H5K5Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5Y8_9PHAE) HSP 1 Score: 293 bits (749), Expect = 1.080e-91 Identity = 181/268 (67.54%), Postives = 186/268 (69.40%), Query Frame = 2
Query: 236 MVRDGVPIPAIIEATHDELAADVRDALQRIRDATVSNSHGRDIFDGHSSDINDELLSFDDLVHNASAPIVTKPMWDAIMRFSHGYFDGRAVMGGSEALYLDGLVIVKLNSDGLLEPVDGSSTPIAEAKHLIFFDGHAHFEALVSLEELLAVTDDVEEAGVAAEKCEQEGVAVE*WGPRISKLGVEXXXXXXXXXXTRTFTVGLLDGAIDYAAGGGVRGAGDTTSSLLSTLLFACAILALLRIVVAFSRCIGDVVRAWMVGVEVTADGG 1039
MVRDGVPIPAIIEAT+ ELA DV+DALQ IRDATVSNSHGRD+FD HSSDI DE+LSF+DLVHNA API FFDGHAHFEAL SLEELL VTDDVEEAGVA EKCEQEGVAVE WGPRISKLGVEXXXXXXXXXX TFTVGLLDGAIDYAAGGGVRGAGDT SSLLSTLLFACAILALLRIVVAFSRCIGDVVRAWM E D G
Sbjct: 1 MVRDGVPIPAIIEATNGELAGDVKDALQCIRDATVSNSHGRDVFDEHSSDIKDEILSFNDLVHNAEAPI--------------------------------------------------------------FFDGHAHFEALASLEELLPVTDDVEEAGVAVEKCEQEGVAVEQWGPRISKLGVEXXXXXXXXXXXXTFTVGLLDGAIDYAAGGGVRGAGDTASSLLSTLLFACAILALLRIVVAFSRCIGDVVRAWMEDTETLPDFG 206
BLAST of mRNA_P-littoralis_Contig1511.1.1 vs. uniprot
Match: A0A6H5KZG6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZG6_9PHAE) HSP 1 Score: 225 bits (573), Expect = 2.610e-65 Identity = 152/417 (36.45%), Postives = 198/417 (47.48%), Query Frame = 2
Query: 152 TPEGAMFVRLHNGGFRNNCGPISLLQRSMVRDGVPIPAIIEATHDELAADVRDALQRIRDATVSNSHGRDIFDGHSSDINDELLSFDDLVHNASAPIVTKPMWDAIMRFSHGYFDGRAVMGGSEALYLDGLVIVKLNSDGLLEPVDGSSTPIAEAKHLIFFDGHAHFEALVSLEELLAVTDDVEEAGVAAEKCEQEGVA-----------VE*WGPRISKLGVEXXXXXXXXXXTRTFTVGLLDGAIDYAAGGGVRGAGDTTSSLLSTLLFACAILALLRIVVAFSRCIGDVVRAWMVGVEVTADGGERGVDSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPSSVMGTTDSYTSFTIRVPDESLRCRLVRGRRYRAGTPGGVSRQIFRRHLAALHQVLAEINPPPEPPVCRWTNK 1369
T G FVRL NGGF N+CGPI LLQ +M D +PI I AT+ E+A++VR AL+ IRD TV SHG + D E+ F+DLV +A I++KPMWD IMR +GYFDGRA+M G++AL LDGL+IV+++S G L +DG +TP+AEAKHL+ +DG+AHFEAL EE+ V D+ E + E + V+ W +S T + GL +D+A G + SS G +YT F +P ES RCRL+RGRRYRAGT G+SRQ RR A++ Q+LA +PPPEPP CRWTNK
Sbjct: 50 TRGGETFVRLRNGGFSNSCGPICLLQHAM-SDSLPIATIERATNGEIASEVRGALRYIRDITVDTSHGHTL-SVLDPDEEREVHGFEDLVDSAERDILSKPMWDKIMRCPYGYFDGRAMMIGADALGLDGLLIVRVDSAGFLVAMDGMTTPVAEAKHLVLWDGYAHFEALFPDEEVYPVFPDLGEEFFFDGHAQAEEIVDVEELPPVADIVDEWDKYLSTSTTSTRGVDESVVATNS-NAGLASHVVDHAGG-----------------------------------------------------------------------------------------HASSSPAGILFAYTGFAPGLPGESRRCRLIRGRRYRAGTSSGLSRQALRRTAASVRQILAMRHPPPEPPACRWTNK 374
BLAST of mRNA_P-littoralis_Contig1511.1.1 vs. uniprot
Match: A0A6H5L6X2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6X2_9PHAE) HSP 1 Score: 155 bits (393), Expect = 4.520e-41 Identity = 85/158 (53.80%), Postives = 110/158 (69.62%), Query Frame = 2
Query: 152 TPEGAMFVRLHNGGFRNNCGPISLLQRSMVRDGVPIPAIIEATHDELAADVRDALQRIRDATVSNSHGRDIFDGHSSDINDELLSFDDLVHNASAPIVTKPMWDAIMRFSHGYFDGRAVMGGSEALYLDGLVIVKLNSDGLLEPVDGSSTPIAEAKHL 625
T G FVRL NGGF N+CGPI LLQ +M D +PI I AT+ E+A++VR AL+ IRD TV SHG + D E+ F+DLV +A I++KPMWD IMR +GYFDGRA+M G++AL LDGL+IV+++S G L +DG +TP+AEAKHL
Sbjct: 16 TRGGETFVRLRNGGFSNSCGPICLLQHAM-SDSLPIATIERATNGEIASEVRGALRYIRDITVDTSHGHTL-SVLDPDEEREVHGFEDLVDSAERDILSKPMWDKIMRCPYGYFDGRAMMIGADALGLDGLLIVRVDSAGFLVAMDGMTTPVAEAKHL 171
BLAST of mRNA_P-littoralis_Contig1511.1.1 vs. uniprot
Match: A0A6H5L5Q9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5Q9_9PHAE) HSP 1 Score: 155 bits (393), Expect = 7.070e-41 Identity = 85/158 (53.80%), Postives = 110/158 (69.62%), Query Frame = 2
Query: 152 TPEGAMFVRLHNGGFRNNCGPISLLQRSMVRDGVPIPAIIEATHDELAADVRDALQRIRDATVSNSHGRDIFDGHSSDINDELLSFDDLVHNASAPIVTKPMWDAIMRFSHGYFDGRAVMGGSEALYLDGLVIVKLNSDGLLEPVDGSSTPIAEAKHL 625
T G FVRL NGGF N+CGPI LLQ +M D +PI I AT+ E+A++VR AL+ IRD TV SHG + D E+ F+DLV +A I++KPMWD IMR +GYFDGRA+M G++AL LDGL+IV+++S G L +DG +TP+AEAKHL
Sbjct: 16 TRGGETFVRLRNGGFSNSCGPICLLQHAM-SDSLPIATIERATNGEIASEVRGALRYIRDITVDTSHGHTL-SVLDPDEEREVHGFEDLVDSAERDILSKPMWDKIMRCPYGYFDGRAMMIGADALGLDGLLIVRVDSAGFLVAMDGMTTPVAEAKHL 171 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1511.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1511.1.1 >prot_P-littoralis_Contig1511.1.1 ID=prot_P-littoralis_Contig1511.1.1|Name=mRNA_P-littoralis_Contig1511.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=249bp MSVKNKNRQRRERANAKRRSRVRARARARAQTTAAAAAARRVQDVYCTPEback to top mRNA from alignment at P-littoralis_Contig1511:11737..13562+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1511.1.1 ID=mRNA_P-littoralis_Contig1511.1.1|Name=mRNA_P-littoralis_Contig1511.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1826bp|location=Sequence derived from alignment at P-littoralis_Contig1511:11737..13562+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1511:11737..13562+ >mRNA_P-littoralis_Contig1511.1.1 ID=mRNA_P-littoralis_Contig1511.1.1|Name=mRNA_P-littoralis_Contig1511.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=747bp|location=Sequence derived from alignment at P-littoralis_Contig1511:11737..13562+ (Pylaiella littoralis U1_48)back to top |