mRNA_P-littoralis_Contig151.36.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig151.36.1
Unique NamemRNA_P-littoralis_Contig151.36.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig151.36.1 vs. uniprot
Match: A0A6H5KGT3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGT3_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 1.240e-22
Identity = 63/131 (48.09%), Postives = 85/131 (64.89%), Query Frame = 1 
Query:  238 ARVAREAHRKKVYLEASAALNEAVRYLKFEGIVEKP-EKLRDANGTAAAARQAGAINSFVKLELEYGPHASIHSDMAALTANVSGRTLRSWVRHFVRGSRFKIQVREYSKRSLHSFIEDEDIRTMFREYLD 627
            ARV  +  R K++ +    L  AVR+L+ + IVEKP E L   +    A RQA AI +F+ LELE G H   H ++AAL A V+ R +RSWVR F+  +RFKI+VR+ SK  L SFI+DED+R + RE+LD
Sbjct:  307 ARVQAQEERLKIFAKGKDILFPAVRFLRLDHIVEKPDEALATDSKKGHALRQACAILAFLSLELENGRHPIKHREIAALPAGVTARVVRSWVRDFLVNTRFKIRVRQRSKHGLLSFIDDEDLREVMREWLD 437
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig151.36.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KGT3_9PHAE1.240e-2248.09Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig151contigP-littoralis_Contig151:160343..161425 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FZS4
Model size631
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue2.45e-10
EggNOG OGs2D50F@1|root,2SWWM@2759|Eukaryota
Cds size630
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789722.3524797-CDS-P-littoralis_Contig151:160343..1605511680789722.3524797-CDS-P-littoralis_Contig151:160343..160551Pylaiella littoralis U1_48CDSP-littoralis_Contig151 160344..160551 -
1680789722.3628044-CDS-P-littoralis_Contig151:160705..1608241680789722.3628044-CDS-P-littoralis_Contig151:160705..160824Pylaiella littoralis U1_48CDSP-littoralis_Contig151 160706..160824 -
1680789722.3735685-CDS-P-littoralis_Contig151:161122..1614251680789722.3735685-CDS-P-littoralis_Contig151:161122..161425Pylaiella littoralis U1_48CDSP-littoralis_Contig151 161123..161425 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig151.36.1prot_P-littoralis_Contig151.36.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig151 160344..161425 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig151.36.1

>prot_P-littoralis_Contig151.36.1 ID=prot_P-littoralis_Contig151.36.1|Name=mRNA_P-littoralis_Contig151.36.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=210bp
PAANKNPAPATRQTTSSKPAPRYFEQPKRRPTGLPGGSGRPTRRPESWTK
ETLPNRGKKRDRQGWMARKEAKRKENKRAARVAREAHRKKVYLEASAALN
EAVRYLKFEGIVEKPEKLRDANGTAAAARQAGAINSFVKLELEYGPHASI
HSDMAALTANVSGRTLRSWVRHFVRGSRFKIQVREYSKRSLHSFIEDEDI
RTMFREYLDE
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mRNA from alignment at P-littoralis_Contig151:160343..161425-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig151.36.1 ID=mRNA_P-littoralis_Contig151.36.1|Name=mRNA_P-littoralis_Contig151.36.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1083bp|location=Sequence derived from alignment at P-littoralis_Contig151:160343..161425- (Pylaiella littoralis U1_48)
CCAGCAGCGAACAAGAACCCCGCTCCTGCAACACGTCAGACCACCTCGTC
GAAGCCTGCCCCACGCTACTTTGAGCAACCCAAACGTAGACCCACAGGTC
TCCCAGGGGGCTCGGGGCGACCAACAAGGAGACCTGAGAGCTGGACCAAA
GAGACTTTACCTAATCGTGGGAAGAAGAGAGACCGGCAAGGGTGGATGGC
ACGCAAAGAAGCGAAGCGGAAAGAGAACAAGAGGGCTGCGCGTGTGGCTC
GAGAGGCACACCGGAAGAAAGTGTACCTCGAAGCAAGTGCTGCACTGAAC
GAGGTGAATGGTACAGCAGAGTGGTATGGCAGTGCAGCAGTACAGCAGCA
TATTAGTACAGCAGTATATAGCACAGCAGTACAGCAGTACTGTACAGCAG
GTACAGCAGTAGTGCAGCCGTATATTAGTTCAGCAGTATATAGCACAGCA
GTACAGCAGTACTGTACAGCAGTATATTAGTACAGCAGTACAGCAGTACA
AAACGCATGATGTGCTCCCATACAGATGCAGTACACATGATGCTGAATAT
GCCCGCCCCCCCCACCCCCCCCGCGCGCTCTGTAACCCTCTTGTATTCAA
GGCGGTTCGTTATCTGAAGTTCGAAGGTATCGTTGAAAAACCAGAGAAAC
TGCGTGATGCGAACGGAACAGCGGCGGCAGCCCGGCAGGCGGGCGCTATC
AATTCCTTCGTGAAATTAGAGTGAGTATTGTACATACTAACGGTAAATTA
ACAGAGTTTCTGCTTCCACAAATATACTGCTCTGCTCTCAACAGCGAACC
CCGTCTCGTTGGCGACGTTTCAAGCTCACCATTAACCCCCACTCCTTCAA
AATATACTATTTCATACCGCACAGGTTGGAGTATGGACCCCACGCTTCTA
TCCACAGCGATATGGCTGCTTTGACGGCCAATGTGAGTGGGCGGACATTG
CGGTCTTGGGTGCGGCATTTCGTCCGCGGCAGCCGCTTTAAGATCCAGGT
TCGCGAGTACAGCAAGCGCAGCCTCCACTCTTTCATCGAAGACGAGGACA
TCCGAACGATGTTTCGGGAATACCTCGACGAGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig151:160343..161425-

>mRNA_P-littoralis_Contig151.36.1 ID=mRNA_P-littoralis_Contig151.36.1|Name=mRNA_P-littoralis_Contig151.36.1|organism=Pylaiella littoralis U1_48|type=CDS|length=630bp|location=Sequence derived from alignment at P-littoralis_Contig151:160343..161425- (Pylaiella littoralis U1_48)
CCAGCAGCGAACAAGAACCCCGCTCCTGCAACACGTCAGACCACCTCGTC
GAAGCCTGCCCCACGCTACTTTGAGCAACCCAAACGTAGACCCACAGGTC
TCCCAGGGGGCTCGGGGCGACCAACAAGGAGACCTGAGAGCTGGACCAAA
GAGACTTTACCTAATCGTGGGAAGAAGAGAGACCGGCAAGGGTGGATGGC
ACGCAAAGAAGCGAAGCGGAAAGAGAACAAGAGGGCTGCGCGTGTGGCTC
GAGAGGCACACCGGAAGAAAGTGTACCTCGAAGCAAGTGCTGCACTGAAC
GAGGCGGTTCGTTATCTGAAGTTCGAAGGTATCGTTGAAAAACCAGAGAA
ACTGCGTGATGCGAACGGAACAGCGGCGGCAGCCCGGCAGGCGGGCGCTA
TCAATTCCTTCGTGAAATTAGAGTTGGAGTATGGACCCCACGCTTCTATC
CACAGCGATATGGCTGCTTTGACGGCCAATGTGAGTGGGCGGACATTGCG
GTCTTGGGTGCGGCATTTCGTCCGCGGCAGCCGCTTTAAGATCCAGGTTC
GCGAGTACAGCAAGCGCAGCCTCCACTCTTTCATCGAAGACGAGGACATC
CGAACGATGTTTCGGGAATACCTCGACGAG
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