mRNA_P-littoralis_Contig151.9.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig151.9.1
Unique NamemRNA_P-littoralis_Contig151.9.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig151.9.1 vs. uniprot
Match: D8LMX4_ECTSI (PX domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMX4_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 1.350e-7
Identity = 112/333 (33.63%), Postives = 138/333 (41.44%), Query Frame = 2 
Query:  761 ENEHGRARGAASAVSVLAVSSATEDGKVELPTGVAASAERAPQEASVLVVDSEAGGPDQRADQSM-GEDTTSLPTPTTKSKRRTSLLRXAXXXXXXXXXXXXXXXXXXXXXXXXXXXXDTDAADTAG--------GVSPAFEATEEPTTAATIIAALP-SLSPVNTADSSASTA-TPRTMSRLASLRNKAVGFTGRLSVGGGGGSRRASRDGDENGPLS-------------ARXXXXXXXXXXXXRRSFSRPLS--SRGKGRGG---FFSMTTRSPGGHDEAGXXXXXXXKGEPGASPRQARSPSPDGLARSGSGAKNPLDMAEKIFTVVGN 1672
            E    R RG ASAVS L +SSATED   E  +          +EA+V   D  A  P + A Q++     TSLPTPTT +K R SLL  A                            DT   D AG        GV+PA +  +          + P SLS   T  ++  +A TPRT SRLASLRNKA G+      GGGGG     RD + +GPLS               XXX         RR+ S PLS  S   G+GG   FFS  ++SP    EA        KGE G        P+P      G G  +P  +A    +  GN
Sbjct:  897 EGREERDRGHASAVSALTLSSATEDYTEEGES----------REANVCCADGAAAAPGELAGQTVDAHPPTSLPTPTTATKGRASLLNRARWSLSSKKATA-----------------DTKQKDAAGAXXXXXXXGVNPAEDLAQXXXXXXXXXXSKPLSLSSTTTPTAAGPSAFTPRTASRLASLRNKARGWRKSRGSGGGGG-----RDSEGSGPLSDGRAGXXXXXXXXXXXXXRRSLGAVARRRTVSGPLSLSSARSGKGGSKGFFSSMSKSP----EAAAGDSDGHKGEEGL-------PAPGEEETGGGGGVSPGGLAPASGSATGN 1186
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig151.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LMX4_ECTSI1.350e-733.63PX domain-containing protein n=1 Tax=Ectocarpus si... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig151contigP-littoralis_Contig151:27737..32232 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size4247
Hectar predicted targeting categorymitochondrion
Exons2
Cds size1509
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789720.9586406-UTR-P-littoralis_Contig151:27736..279711680789720.9586406-UTR-P-littoralis_Contig151:27736..27971Pylaiella littoralis U1_48UTRP-littoralis_Contig151 27737..27971 +
1680789720.9915788-UTR-P-littoralis_Contig151:29729..322321680789720.9915788-UTR-P-littoralis_Contig151:29729..32232Pylaiella littoralis U1_48UTRP-littoralis_Contig151 29730..32232 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789720.9716072-CDS-P-littoralis_Contig151:27971..287591680789720.9716072-CDS-P-littoralis_Contig151:27971..28759Pylaiella littoralis U1_48CDSP-littoralis_Contig151 27972..28759 +
1680789720.9816177-CDS-P-littoralis_Contig151:29008..297291680789720.9816177-CDS-P-littoralis_Contig151:29008..29729Pylaiella littoralis U1_48CDSP-littoralis_Contig151 29009..29729 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig151.9.1prot_P-littoralis_Contig151.9.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig151 27972..29729 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig151.9.1

>prot_P-littoralis_Contig151.9.1 ID=prot_P-littoralis_Contig151.9.1|Name=mRNA_P-littoralis_Contig151.9.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=503bp
MPLLLSSARAAAAARAATKAAAKAATLEASAIAPESGGDGGKEHNEAGAA
PDAVQRIALPAVPVVAARAPVAGSTLVPPAVVIEEKEKQPAAAVIATGPS
PASDTTLAGLAADADAAAAEEEEEEESGEKVAIEGKEKQPAAAVVATEPA
PVSDTTMAGVAADAAAAAAAEEDSGENEHGRARGAASAVSVLAVSSATED
GKVELPTGVAASAERAPQEASVLVVDSEAGGPDQRADQSMGEDTTSLPTP
TTKSKRRTSLLRRARKSFSSKTVGGDTKQKAAAAAAPAAAAADTDAADTA
GGVSPAFEATEEPTTAATIIAALPSLSPVNTADSSASTATPRTMSRLASL
RNKAVGFTGRLSVGGGGGSRRASRDGDENGPLSARSSGSSSGAATSSRRS
FSRPLSSRGKGRGGFFSMTTRSPGGHDEAGGGGGGGGKGEPGASPRQARS
PSPDGLARSGSGAKNPLDMAEKIFTVVGNWGSTADNAAAAAAAAAPPSPG
AE*
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mRNA from alignment at P-littoralis_Contig151:27737..32232+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig151.9.1 ID=mRNA_P-littoralis_Contig151.9.1|Name=mRNA_P-littoralis_Contig151.9.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4496bp|location=Sequence derived from alignment at P-littoralis_Contig151:27737..32232+ (Pylaiella littoralis U1_48)
GGAGGAGGAGGCGGAGGAGCAGGATGTGTGCGTGAGAGGCCGCGAGGCGG
CGTCCGCGGTGTCGCGACTTGACCTGTCGTGTACCACAGAAAACCTGTCG
TCTGCCACTGAAGGGGATAAGGAAGATGGCGACGGAAACAAGGAGGGGGG
CGGGGCGGAGGCGGAAAGGAAGGACGGTGGTGCTTTGTCCGACCGGGCGG
ACGCCGAAGCTGAACCACAAGCAGGACATAGCCCGATGCCGCTGCTGCTG
TCATCTGCTCGAGCAGCGGCGGCGGCGAGGGCGGCAACAAAGGCGGCAGC
CAAGGCGGCGACTTTGGAAGCTTCTGCGATCGCCCCTGAAAGCGGTGGGG
ACGGGGGAAAGGAGCACAACGAGGCTGGCGCGGCCCCTGATGCAGTCCAA
AGAATCGCCCTGCCCGCGGTACCAGTAGTTGCTGCGCGAGCACCTGTCGC
TGGCTCGACGCTCGTCCCACCCGCGGTGGTAATCGAGGAAAAAGAGAAGC
AGCCCGCCGCCGCCGTCATCGCGACAGGACCTAGTCCTGCCTCGGACACG
ACTTTGGCAGGCCTTGCCGCTGATGCCGATGCGGCTGCTGCGGAGGAGGA
GGAGGAGGAGGAATCAGGCGAGAAGGTGGCAATCGAGGGAAAGGAGAAGC
AGCCGGCCGCCGCCGTCGTCGCGACAGAACCTGCTCCTGTCTCGGACACG
ACTATGGCAGGCGTCGCCGCTGATGCTGCTGCTGCTGCCGCTGCGGAGGA
GGATTCAGGCGAGAATGAGCATGGGAGAGCCCGCGGGGCAGCCTCCGCAG
TGTCAGTGCTCGCCGTGTCGTCGGCTACCGAAGATGGGAAGGTGGAGCTT
CCTACAGGTGTTGCTGCATCCGCTGAACGAGCTCCGCAAGAGGCTAGTGT
TCTCGTCGTGGATTCTGAGGCGGGTGGACCTGACCAGCGTGCCGATCAAA
GCATGGGCGAAGACACTACCAGCTTGCCCACGCCTACGACGAAATCCAAG
CGCCGGACTTCTTTGTTACGAAGGTATGTGTGGGTTTCACACATGTACCG
TAATACACAAGGTTCGGTCATATTCGAATGTTTGCGTTGTCGGCCTTGGA
TGGCTTTTCACGGCTTCTTTCTCGCGTCATGGTTGGGAGTTTGGCGCTGT
ACCGCCAACGGCAAAGCAGCCAGACACGCCTCCAAAACTTGACAACAATT
CGCCCTCATGTAAAGCCCGTTCGTCAATCGAACACCTATACTCCCGCCTT
CCCGCGCGTCGCACGAACACAGGGCAAGAAAGTCGTTTTCGAGCAAGACG
GTCGGTGGGGACACCAAGCAGAAGGCCGCTGCTGCTGCTGCTCCTGCTGC
TGCTGCTGCCGACACCGACGCCGCCGACACTGCTGGAGGAGTAAGCCCCG
CTTTCGAAGCCACCGAAGAACCTACCACTGCTGCTACCATTATCGCCGCG
TTGCCGTCTCTATCGCCGGTGAACACCGCCGACAGCAGCGCCAGCACCGC
CACGCCGCGCACGATGAGCAGGCTCGCTTCGCTCCGCAACAAAGCCGTGG
GATTCACCGGACGGTTGTCCGTGGGCGGCGGCGGCGGCAGCCGCCGCGCC
AGTCGCGACGGCGATGAAAACGGGCCCTTATCTGCGCGCTCGAGCGGCAG
CAGTAGCGGGGCCGCCACGTCCTCTCGCAGAAGTTTCAGCAGGCCCCTGT
CCTCGAGGGGCAAGGGTCGGGGAGGCTTCTTCTCGATGACGACGCGGAGC
CCGGGAGGACACGATGAGGCAGGGGGCGGTGGCGGTGGCGGTGGAAAGGG
GGAGCCGGGGGCGTCCCCGCGGCAGGCCCGCTCCCCTTCTCCGGACGGTC
TCGCAAGAAGTGGGTCGGGAGCGAAGAATCCCTTGGACATGGCAGAAAAA
ATATTCACGGTCGTGGGCAACTGGGGCAGTACTGCTGATAATGCTGCTGC
TGCTGCTGCTGCTGCTGCTCCACCCTCGCCCGGCGCGGAGTAGAACCAAT
GAAGAATACCTGGCATATCCTATATAAATACTAAATAACGCTGGTGCTGT
GGTGGTGGCTCGCACCGTGAGCAAGGACTTCTGCTCCTTTCGTTCGTGCT
CTGCGCTGTGCGTTGCTTTGTTTTGTCTTCTTCTGTTTTTGCCCGTTGTG
TGTGTTCCGGGACAACAGAGTCTCTCTTCTCTTTTTTTTGCTACTCGAAG
TATTAAGGCACCCACTGGAAAGGTTGTCTCCGCCCTACTTGTAGAAGGTT
CAGAGCGGACCACGGAGATATGGGGTAGACTGCCGTCGGAGCTGTGGACG
GGCACCGATGACAGCAACCGCGCATGAGGTGCCGGCCATCTGGTGAGGTT
GCTCGCACAGCAGCGGGTGCAGTTTGGGAATGGGTGGAGAAAACTGTGAA
AGTTTGTATCGGCGAGGGGTGCCCTCGCTCGCTTGAAGGGGCCTTGGGAC
TGGGTTTGAAGGAAGCTTGTTGGGGCATGCGGTTGGTCGACGAGCCCTGT
CTCGAAAGAAAGTAGACCGTATACCGAGAAGTCTGAAAGTTTTTTTCCTT
CAAGTTTTCCCAGCACGAAGGGACGTGGACAGCGTTTCCCTGGTGTTTCG
TGCACAACGCTGCGCTTTGCTCGCAAGTTTTCCCACGGCGGTCTGAAAGC
ATGTCGGTCGCGCGTGTTGAATCCTCGGGTTGTTTCTTGTTCATGTACTG
CTGTAGTCCCATATACATCTGCGTTGATTCGTCAACATTTTTGAGCGGTT
CCTCTGGAATGAGCCGTTGCCGGGGTTGGTGTCGTTCGTCGTCGTCGTCG
TCGTCGTCGTCGTCGTCGTTGCCGTCGTCTTGTTGTAGGCGTATCATAGC
TCTTGTTTGTCATTTGAAAAGCGTGTTAAGAAACATTTTCTCTCGTGAGC
TATGGTAGAGCCGCACCACACAGCTGGCTGTGTCGCTGCTTTATGTACGC
GTCCCTTACATGCTCAAAGGAGGTATTTCCATGAGCGGTCCTTGAGGATC
GCGCTCTTCACCCACCTCTCGGTACTTTGCCCGAGGGAGGAGCGTGCTCG
CGCGATGTGTCAATTCTTGTTTGACTCCAGTCAGTGCGCTTATTACGCTC
GCGTAACCGAACGCATGCACACACACATATCATACGCGGTTTGTTTCAAG
TTGTTATTTTTCGCGGTACGAGTGAGGGTGGCGACGCTTTGATACATTTT
CGCAGCACTTCGTCCTACGGGTAATTTGTTGCTTAGTCCATCCAATGTTT
TGTATGTTCTCGGTAATGAATGTCAGACGAATTTTCACCAATTATATCTT
CCAACGGTATCAAGAGAAAATGATTTCTCGGCCGACTTCTTGTGCGCAGC
CAGTACAGAGGTTAGGTTTAGTGTATGTAGAATTTTGAAGGAGTTAAAGT
TTTTTGCGTCTTCAGTCGCCGCGGCTTACAAATGGTGTTGACGATCTCTG
TCCTCTTCATGAGCTTTTTGTAGGCTTTTTTTCTGCGCGGGGGGGTGAGG
GCATCAAAATGTAACTGTCTACGCCGGTGCAGGGCCCCTTCAGGGATTGG
TTACACTAGCCCCATTTGCTGTGTGTTCTGCGGTTCTGCTGTGTACAGGA
AACACAAAGAGAGGGTTGTTGCCTGAGGCCGAAAAACTGGCGTTTGTTGG
TTGTCATGACACAGCCCTTAATCCAATCAGTCAGCCATGTATATTGTTGG
CGAAGGGATAGCCGTTAATTTATTGTTGTATATTGCCTGCGAGGCGTGTT
GACTCAAATATAATCCCCTCTGCGAAAGGGCCCTGTCATCGTCCTGAGAA
AAGGGAAGTTTGGTTGTTGTCGAAGAAAGAGCAAACTGTCGTTTATTTGC
AATTATTTTCGGAAACACAGGGCCACACTAAAAAGGCTTCCGAAGCATGA
CATGATTCTCCTCTCTGTCAGTGCGTTGATAGAAGGGTACAGAGCACTAT
GGTTGCATTAGAGCCGGAGAGTGCTCGCACCAAGAGGGCTACGGAGCACG
AGATCATAAGAAAGGATGGCTGTGGTCGGCTAACACAGGTGGCCACGAAG
CCCACAGCAGTGTCTTTTTCCCGCCCACCCACCCCTCGTCTTACGATACC
CCTCGTCTTACGAGGGTGGGGGAAACTAAATACATATCGTACCAAGGAGT
GCTTTTCTTCCTATCTATAACAACGGGTTTTCGAGGAGTGGCGGATCACC
ATGGTGGGGGGAGTTACGGAATAAATAGTTGAGTACCATTTGGAGACTTG
ATCATACCATACTCCAGTGTGCCATGTAGTCGGAATTTTTTCCCCCCGGC
TGGTCAAAACAATCGCAGAGAGGCAGGTTTGAGAGGAAGAGGCACGCGGG
GGCTGGTCGCCAAGGTGGCGTCAAATCAAAGTGCTCGGCCTCTGTATAGG
CTCTCTCTCCCGTGGCTCCGAAGCGGACGTTTCATAATGCAGCTCTTGAG
AATAACAACGAGCATGCCTTTTTCTGCAGAGGTGCCTCACTGTAAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig151:27737..32232+

>mRNA_P-littoralis_Contig151.9.1 ID=mRNA_P-littoralis_Contig151.9.1|Name=mRNA_P-littoralis_Contig151.9.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1509bp|location=Sequence derived from alignment at P-littoralis_Contig151:27737..32232+ (Pylaiella littoralis U1_48)
ATGCCGCTGCTGCTGTCATCTGCTCGAGCAGCGGCGGCGGCGAGGGCGGC
AACAAAGGCGGCAGCCAAGGCGGCGACTTTGGAAGCTTCTGCGATCGCCC
CTGAAAGCGGTGGGGACGGGGGAAAGGAGCACAACGAGGCTGGCGCGGCC
CCTGATGCAGTCCAAAGAATCGCCCTGCCCGCGGTACCAGTAGTTGCTGC
GCGAGCACCTGTCGCTGGCTCGACGCTCGTCCCACCCGCGGTGGTAATCG
AGGAAAAAGAGAAGCAGCCCGCCGCCGCCGTCATCGCGACAGGACCTAGT
CCTGCCTCGGACACGACTTTGGCAGGCCTTGCCGCTGATGCCGATGCGGC
TGCTGCGGAGGAGGAGGAGGAGGAGGAATCAGGCGAGAAGGTGGCAATCG
AGGGAAAGGAGAAGCAGCCGGCCGCCGCCGTCGTCGCGACAGAACCTGCT
CCTGTCTCGGACACGACTATGGCAGGCGTCGCCGCTGATGCTGCTGCTGC
TGCCGCTGCGGAGGAGGATTCAGGCGAGAATGAGCATGGGAGAGCCCGCG
GGGCAGCCTCCGCAGTGTCAGTGCTCGCCGTGTCGTCGGCTACCGAAGAT
GGGAAGGTGGAGCTTCCTACAGGTGTTGCTGCATCCGCTGAACGAGCTCC
GCAAGAGGCTAGTGTTCTCGTCGTGGATTCTGAGGCGGGTGGACCTGACC
AGCGTGCCGATCAAAGCATGGGCGAAGACACTACCAGCTTGCCCACGCCT
ACGACGAAATCCAAGCGCCGGACTTCTTTGTTACGAAGGGCAAGAAAGTC
GTTTTCGAGCAAGACGGTCGGTGGGGACACCAAGCAGAAGGCCGCTGCTG
CTGCTGCTCCTGCTGCTGCTGCTGCCGACACCGACGCCGCCGACACTGCT
GGAGGAGTAAGCCCCGCTTTCGAAGCCACCGAAGAACCTACCACTGCTGC
TACCATTATCGCCGCGTTGCCGTCTCTATCGCCGGTGAACACCGCCGACA
GCAGCGCCAGCACCGCCACGCCGCGCACGATGAGCAGGCTCGCTTCGCTC
CGCAACAAAGCCGTGGGATTCACCGGACGGTTGTCCGTGGGCGGCGGCGG
CGGCAGCCGCCGCGCCAGTCGCGACGGCGATGAAAACGGGCCCTTATCTG
CGCGCTCGAGCGGCAGCAGTAGCGGGGCCGCCACGTCCTCTCGCAGAAGT
TTCAGCAGGCCCCTGTCCTCGAGGGGCAAGGGTCGGGGAGGCTTCTTCTC
GATGACGACGCGGAGCCCGGGAGGACACGATGAGGCAGGGGGCGGTGGCG
GTGGCGGTGGAAAGGGGGAGCCGGGGGCGTCCCCGCGGCAGGCCCGCTCC
CCTTCTCCGGACGGTCTCGCAAGAAGTGGGTCGGGAGCGAAGAATCCCTT
GGACATGGCAGAAAAAATATTCACGGTCGTGGGCAACTGGGGCAGTACTG
CTGATAATGCTGCTGCTGCTGCTGCTGCTGCTGCTCCACCCTCGCCCGGC
GCGGAGTAG
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