mRNA_P-littoralis_Contig151.81.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig151.81.1
Unique NamemRNA_P-littoralis_Contig151.81.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig151.81.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig151contigP-littoralis_Contig151:481671..488703 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size923
Hectar predicted targeting categoryother localisation
Exons7
Cds size669
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig151.81.1prot_P-littoralis_Contig151.81.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig151 481925..488703 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789720.668415-UTR-P-littoralis_Contig151:481670..4819241680789720.668415-UTR-P-littoralis_Contig151:481670..481924Pylaiella littoralis U1_48UTRP-littoralis_Contig151 481671..481924 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789720.6811767-CDS-P-littoralis_Contig151:481924..4821341680789720.6811767-CDS-P-littoralis_Contig151:481924..482134Pylaiella littoralis U1_48CDSP-littoralis_Contig151 481925..482134 -
1680789720.6913211-CDS-P-littoralis_Contig151:482972..4830831680789720.6913211-CDS-P-littoralis_Contig151:482972..483083Pylaiella littoralis U1_48CDSP-littoralis_Contig151 482973..483083 -
1680789720.7085829-CDS-P-littoralis_Contig151:483333..4834021680789720.7085829-CDS-P-littoralis_Contig151:483333..483402Pylaiella littoralis U1_48CDSP-littoralis_Contig151 483334..483402 -
1680789720.7216425-CDS-P-littoralis_Contig151:483593..4836411680789720.7216425-CDS-P-littoralis_Contig151:483593..483641Pylaiella littoralis U1_48CDSP-littoralis_Contig151 483594..483641 -
1680789720.7332573-CDS-P-littoralis_Contig151:483787..4838741680789720.7332573-CDS-P-littoralis_Contig151:483787..483874Pylaiella littoralis U1_48CDSP-littoralis_Contig151 483788..483874 -
1680789720.7476509-CDS-P-littoralis_Contig151:486430..4865231680789720.7476509-CDS-P-littoralis_Contig151:486430..486523Pylaiella littoralis U1_48CDSP-littoralis_Contig151 486431..486523 -
1680789720.756345-CDS-P-littoralis_Contig151:488652..4887031680789720.756345-CDS-P-littoralis_Contig151:488652..488703Pylaiella littoralis U1_48CDSP-littoralis_Contig151 488653..488703 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig151.81.1

>prot_P-littoralis_Contig151.81.1 ID=prot_P-littoralis_Contig151.81.1|Name=mRNA_P-littoralis_Contig151.81.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=223bp
EAARAEELAVIQRALEKAATEARQRAAAEVAAARRFGVEQAPKEAHERAQ
FKKEEDERARVLACEEAARDRESARQQARATAAQTSSASVTLEDESASSR
PMQEDGDREGGQDLEGYQGEGDTAPDGRPDGIWRWAPLCAAHGERCISSL
PHQSPDLGKAAWICSREGDDRCSFSRKIDVDGMMRVGNRYHYTGTKEDLQ
SSRLVIEGSLLRLSLFQSGLVV*
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mRNA from alignment at P-littoralis_Contig151:481671..488703-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig151.81.1 ID=mRNA_P-littoralis_Contig151.81.1|Name=mRNA_P-littoralis_Contig151.81.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=7033bp|location=Sequence derived from alignment at P-littoralis_Contig151:481671..488703- (Pylaiella littoralis U1_48)
GAGGCGGCTAGAGCAGAGGAACTAGCGGTCATTCAGCGTGCTCTTGAAAA
GGTGATGTTGTCGAGGTGGCTTTTGGAATAACCAAACCAGAGGTCGTCCT
ATTTGGATTACATAATTGACAGTAATTTATTGTGATACGTCCCTGTATCA
AAATAGTACGTACATTCAGACGGCCGTCTGGCTCGTTTCCATTTGGCTTC
ACCACTGGAGTTAAAATTTGTTCGAAGCACTCTCTATATATTTGGACTCT
AGCCCTATCTTTGGCGGCAATAATAAGATACGGAAGCTCTGCTTGATACC
GGAGCATGCCCCGGAAAGTGGCGTGTGCTTGAGTGCTTACGCAGGTGTAT
GTCACGGCAGTTCCCTTGGTTGACTTGCTACTCTTCTCTTTTTGGCGTTG
ACCTTCAGATCATGATAAATTTCCTGAAATGGGTAAGGAAGCGCTCCGAC
CAAGCTGCAACTGTGTCGAATGGTTCACCTTGTGGCGATAATTTCCGAGA
CAGTGTCGCTGAAAACACTGAATATTGGAAATTACTCTCGTCACGCTAGA
TAGGGTAAAAGACCTCCACAATGTAGTTCATCATCGCTGCGCGTGAGAAA
ACACCGCGGATATTCATTTGAAACAGAACAGCAAGCGCGAAGTCAACTCT
GCCGGCGACAACTATGTCCATGAAGCTACCGTCGTGCGAATGACTCGCAC
CGTACGCCTTCAAGAGGGTGTTTGCGCATGAGGATTTCTTATCTCAAAAT
TCCTTTCCTTTCCTCGAAAAAACAAAGTTGCGGTGAGGCTGTTCTCCCCT
ACAAGAATCTAACAAGAGAACCCCCCCGCCCCCCCCCCCCCTGCGAATAG
CCCTGTTGCACAAATCACGCGACAGCACCAACCAGAACTCGATCCCTAGA
GCACAGATGCCGATCAAACCTGATAAAGCGTGTGCCCCTTTGTTCTCAAG
TTGACCACAGCAGTTTGTTGGCAGTGGGTTCGGGCTGTGGCGAAATTTTG
GCGGCGATGTGTGTTGGAGATGGAAAGGTAGATGAAACGAAATAACAGAT
TCGCTCCTGTTTTTACGGCCGGATTTTCACCGGATTCTCCTACCTCAACC
CACTCCGCCGCCGAAACCTCGCCACAGCCAAAGCCCACACCCACCAAATT
TCCTGTGGCCAACCTGAGAACACCAGAGGGTGCCGTCCAACAGTTGTAGT
CTCGATTGGTGTTCCAGGGGTCGAGTTCTGCTTTGTGCTGTCTCCTCTTG
TGCTCAAAAAGTAGATCTTTCAATCATTCGGGCTCTCTGTTATTGAGGAG
GGGGGGTACCTCAGGAGAAAAAACGCAGGACCAAATAACGGAGCCGTAAG
AAACGGTCCAGAGAAGAAATCCTTTTGACAAAAAAATTGAACTAGACGTA
ATCTAATGAGTAGTCGAAACACTGGTAGATGAATCTTATACTTTGTGTTT
GTTGCAATATCTACTCCAGAGCCTCGTCTGGAGAGAGGCGAACATATTGA
TTTGGTTCTAACTTAAAAAAACACAGAGAGTGTGTTAAAAAACAAATCCT
TTCTTACACCCCACACACACCTTGCATGGTGCAGAGCAATACATACACAC
ACGCGCGCGCACGCACTGCTGTAGATATATCTGTCGTCTGTCGTAGTAGT
GAAGGGCGCCGGGTCAAGCGAAGTGAATGCGAACTCAGGGGTCATGCCTG
AAGGATGGGACAAGTGGCGGTACGCTGAAATGGCGACAGAGGGGCTGTTG
TGGAACTGGTGTTCTATTTTCAAGTGCAAGAAAAACTGCTACTCGAATTT
GAAGTGCCAGGTCAGACATCGGGCGATGCTCGCCTGTTTAGTGAAACCAC
CTAACCACCTCCCACCCAACGTCGTGCGGACGTAAAGCACGGAATAGTGC
GGACAGCCAGGAAGCTTTCTCCTTGATACAACGTTTTGCGGATGTAGGGA
ATTCGAGCGTGAATGTGGTGTTCTGAGGCTGTCGCGTCAACTGCTGCTGC
TGTGCTCTGGGGACGCACGCCAGCCCATACTTGCCTGTTTGAGAGAGTTG
TTCCACAAACTTTACGCGTTTCATTCCTAGCACATTTCCACCACATCAAC
AACGTCAAGATGTTGGCACGGTGACTGCTGTGCGGTTGTCCGCGATGAAC
TCATAAGTACTGCTTGATCACGCTGGATAGGCCGCTACCGAAGCTCGGCA
GAGAGCAGCGGCGGAGGTGGCGGCGGCGCGAAGATTCGGCGTGGAACAGG
CACCCAAGGAGGCACATGAAAGAGTAAGCCTCCTGCTTTGCCGTTGATGG
GAGCTACTGTTGTTGTCGACCATGTTATCATCCACAACTCCCTGTGTTTT
ATTTTTGGAGTCTATCGAAAAGTACCCGTATTACGATGCGTACCGGTAGT
TTGTTTAGACGGACGAACACCGTGGGTCAAAACCCGCCCCCCGGGTGATA
CTGATATATTCCGGGGAATACGGTACAGAATACAGGCTGGTGCGACCACA
AGGTATGGGAAAGAAATAGGTACCGCATTGAAAAAAGTTGCATTACACGT
GCAAATTCGGCTGATAAATTTCATCCCTTGTAGTTCATCAGAATGTGAGA
AGTGCAGACTCGCTGTTGGCGGCCTACTGCCTTACAGCACATACCAAACC
AGGCAAGCAAATTCGAAATGGTGTGCCTCTGAAGCAGCTGCTAGTCCTCG
CCGGGTTTGAAGTCGCGGTAGATACGGCAGCAAGCATCATCATCGGGTGG
CCAAGTTGTTAACGGCGCCCGCGCCCCAACTTCGGTACGAAGTGCCCCCC
TGATGACGCTCCGCCGAGCGGGTTCATAAGTTTTATCCTTTCGACTACCC
AATTTTACGGCTGGCAAATAGAACCACCATATAAGCGTTCCTTCTGTATT
GTTCTATTCACTCGCCGTAATTTGTGAAATTCGAAAGAATTACCAATCAA
CCCGGTTGACTTTTGGGTTACGTCGGGATGTCGTTCGAAAGCCTCTGTCT
GCCCAACCCACATGATCACGACCCCCCCCCCCCCCTAAAAACGCCTGCTG
CCGAACTCAAAGGAGATTGGAAATAGAAAATAACTTTGATATTTGAAGTG
CAGTATCAAACCTATTTATACAGGCTGGTTCACGCAAGAAACACCAAATG
TAGTCAACACACCGTCCCGAACCCAATAAACCGCCGATCACAACAAATAT
GGTACCAAACTAACCGCTGTCAGTAAAGGAAGACCGTGACGTGCTCATAT
TTTGTATGGCCATTTTGTATAGGGCTCTATCAGTGGAGCTAGGGGACGAA
ATGTGCCACATCCACAGAATGGCGTTGTGTAACACCCCCCCCCAATTTCA
ACATATGAGGCTTTCCACTCTAAATGCTAGATGAACATAACTCCAGGTAT
ACCTTTTTTCAACGGATGTATGGCCTCTTGGGTTATGATGACGGTGTCCA
CAAAATATTTTTCGAAACTCTACAAATTGACGTAGTTTGGCCAATATAAG
CGTAAATATTCTTTAAAACGGCCGATTCTAGTCTTAATCCTAGTGAGTAG
GTGTTTTTCAGTACTTGACCGCACTATGTTGATTTTGATGGGCAACGAAT
ATTTAAGAAAAATTAAGGGTGCGTTTTCTCCCGCGGGTTTTTTCGAGTTA
GATCCTGAAACTTTGCACGCATGTTGTGTTATGTACATACAAAACTTTCT
GCTGTCGGGGTGCAGCGATTTTGTTTTGTTTTTCCGAATTTCTGGGGTCC
CAAGTCGACAAATGTATACTTGAAGTACAACAATACCTAATATAAAAAAA
TTCGTTGCACCCCGACAGCAGAAAGTTTTGCATTGACATAACGAACATGC
GTGCAGAGTCTCAGGGCCTATCTCGAAAAAACCGCGTGATAAAACGATGT
TGACTAAAGTTTGTGGTTCTTGCGTGAACCAGCCCGTACACTTCGAGTGT
AATGATGTTGCGAAATATGTGGCGTTTTTTAGTTTAAATCCGTATTTGTG
TCGGGCCAACATGTCAATAACAATGCAATGAGTTACCCTCGTCGTCAGTG
GACACTTCGAAGTCCCCAGCCTTTTCTAAGGCCACCTCATCGTATTTGTC
ACTCTTTATTTAATGTCCCACACTAGAGTGTTTGATTGGAAACCATGAAG
AGGCTTTGCGACATGCGCTCCAAACATTTTTGTTCACTTTCTCGAAATTG
GTGATATTTGATCCACAAATGACCAACAGATAAGCCCGATTATTTTCGGT
GCCATCAGGATCTGCGGTTCGTCTTTTTGACGAACACAATTATAGGATCA
CCGTCGAAAGGGTTGGAACCAAACAAAAACTTACCCACAAATACCCAGAC
TCATGGGACTGAGGAAGTCTGCGTGCAAATGGCCACACTTTCAGCATGCA
ACAACTGCAGTGCACTCTCTCTCCCCATGTTCATCTCTTCATCCATATCC
TCCCAGGCCCAATGTGTGTAGCGTGTTTTGCGGCTCCATGAGCGGACGGG
ATAGGTAAGAAAAGACATGAACGCGCGAAGGCGCTACTCTATCAACGAGC
GGGTCACGATATTAAACGGAAGCACTTGGGGAGAAAATAAGCGCACTCAC
CTCTGCCGCCCACACTTTGTTTTTGTTCAATTATATGCTATGGGTCTCAG
ATGGGGAAATAATCAAATTGAAATAATAAAGGGCAAACAGACGGACAGGC
AAGGTTCGTACAGGACGCCCATCGGGTTTTCAGGCATTTACGTGCAACAA
TTGCCATCAGGAAGTTATTGAATTACCGATTATGAATAGTTGGAGTAATG
ACGTGTGATACCGTCGGGTCCGATGTTAGGCGCAATTCAAGAAGGAAGAA
GATGAACGCGCTAGGGTACTGGCGTGCGAAGAAGCTGCACGGGACAGGGA
GTCCGCGAGACAGCAGGTGACGTGACCCGAGCTTTGCTCAGCGATGTTTG
TTGTCTGAGCAACGACGATACATTTTCCAGCAATTGATACAGTTAACGAG
CACAAGCAAGGTGATGAAAATTTGATGACATACGTCGTACCTTGCGTCGG
TGATCCCCGCAGGCGCGGGCCACAGCTGCACAGACGTCTTCAGCCTCAGT
TACACTGGAGGTGAGTGGGGCGGTTGGGTCGTTCTGGCGTGCATGCTTCC
TTGCGACGCAATTTTTATCCGTCGCATTTTGACGCATAGCGTTTAATCTG
CCGCTTTGCCGGGGATACTCGCTGAAGAGGATAACCCCAACCCTATTCGT
CGATGCCCTTGATACACCACTAACGTTTTCGTTTCCGATCCGCGGTGTCA
GGACGAATCCGCCTCGTCGAGGCCAATGCAAGAAGATGGGGATCGAGAAG
GAGGGCAAGACTTGGAAGGGGTGGGTAGGCTGCCGGAAAACTAGCTGTCA
ATGGTAGCGATAACTCAAAATGCCCTTTCTACATCACTGACGCATTCCTT
TACGAGCCGCTGTCAAGGCGGATCCTCCTCAGCGACGACAACGTATGAAA
AGGCAGACGTGGAGGTGTGTAGCCTGCCGGGCGTACAGGCATGTTCGTCT
ATGGGAGTCAATTCTGACGATTCCTCAGTGACCTCCCTACGCCTCTCTCG
TTTTCGTTTCCGATGCGCAGTATCAGGGTGAAGGGGACACGGCCCCCGAT
GGGCGACCAGACGGGATATGGCGCTGGGCCCCCTTGTGTGCCGCCCATGG
GGAACGTTGCATTTCTTCCCTTCCCCACCAGGTGGGATTTTGTGGCGGTT
CGGGTAGTACGTCTGTCTAAAGTTTAGTAGGATGGAATATTGATATCTAT
TTTTGCAGCTTCAGTACCCCCGGAAGCCCGGTATTGCGCGAAAGATACAA
ATCTCGTGTCAACACGAATCGGTTCTCTGCCTTTCGGACACCGATGGCGA
CCGAACCATTTGAGGTGTACCCTCCGGGTGTCTGACTTTTAACGTACCAA
TTTCGTAGGTTGCAGGCTTTATGTACCGCGAGATTCCGGTGTCGGAATCC
TCTGGTATTCCGGGGTCCAACTTTCGGTCGCGATTTTCTGTTGGCTACCT
GACAACTTACTGAGCCCCACGTGGGAAAATACCGGGCTATTCGGAGATTT
CGACGGTCACCTGAACAAGTTTATTTCTGGCCATCTCAAACAGATATACT
GGGTGTTAGGAACTGACTCGGGTCACACGTCTTGGAAGCCAGTTTGGATA
CCTGATTGTTGTCGTTCCACGATAAAAATGTAGATGGCGCGTAGGACCCC
TTTGCAAAGCGAAATCAACTATCCACTTCTTTCAAAGCACGGCAAAATAA
AGCATCCGGGTAGACACGTTGCTCTTTCAGATTCCTCGACGTAGACCAGG
CTCACACGGCTATGTGTGTAAACTTGCGCCTAAAAATTATGGCGGGGCTG
ACACACAACCCATAGTTACACCGCAACAAAGAAACGCGTAGGCCTCACAC
CGGCTCCCTCATTACCCCAGGTCTCTATCTAGATAGTACGGTCGGTTACC
GGACGTATGGTCTAGAGTCCTGAGCACCCAATCACCACGCATACCCTCAT
TCCCGCTCCGACAACACAGAGTCCGGACCTCGGAAAGGCCGCATGGATAT
GCTCGCGCGAGGGAGATGATCGTTGTTCGTTCTCACGAAAGATCGATGTC
GACGGGATGATGCGCGTGGGCAACAGGTATCATTACACTGGCACAAAGGA
AGATCTTCAATCTTCGAGGTTAGTGATCGAAGGTTCGTTGTTACGGCTCT
CGCTATTCCAGTCTGGGTTGGTAGTCTAGTCATACGACAGTGTTTCGGGA
GATATTTGGACTGTCTGTTGTAAGCGCTTACATTTCACTGCGTCCGCAAC
CTAACTCAACCACCATTGTTCATATTTCGTTGACGTTCCCTCGTCATGCA
TCATGCGCGCACGCATGGGCCAAATACGTGTCGCCACGGCTATCATCTGC
AGCAGCCGCGGCATTGAGAAGGGCAGTCGCAGCAGGAGCAGAAGCAGTGA
CAGTGGCAGTAGCAGTGACAATGGGTAGCAGTA
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Coding sequence (CDS) from alignment at P-littoralis_Contig151:481671..488703-

>mRNA_P-littoralis_Contig151.81.1 ID=mRNA_P-littoralis_Contig151.81.1|Name=mRNA_P-littoralis_Contig151.81.1|organism=Pylaiella littoralis U1_48|type=CDS|length=669bp|location=Sequence derived from alignment at P-littoralis_Contig151:481671..488703- (Pylaiella littoralis U1_48)
GAGGCGGCTAGAGCAGAGGAACTAGCGGTCATTCAGCGTGCTCTTGAAAA
GGCCGCTACCGAAGCTCGGCAGAGAGCAGCGGCGGAGGTGGCGGCGGCGC
GAAGATTCGGCGTGGAACAGGCACCCAAGGAGGCACATGAAAGAGCGCAA
TTCAAGAAGGAAGAAGATGAACGCGCTAGGGTACTGGCGTGCGAAGAAGC
TGCACGGGACAGGGAGTCCGCGAGACAGCAGGCGCGGGCCACAGCTGCAC
AGACGTCTTCAGCCTCAGTTACACTGGAGGACGAATCCGCCTCGTCGAGG
CCAATGCAAGAAGATGGGGATCGAGAAGGAGGGCAAGACTTGGAAGGGTA
TCAGGGTGAAGGGGACACGGCCCCCGATGGGCGACCAGACGGGATATGGC
GCTGGGCCCCCTTGTGTGCCGCCCATGGGGAACGTTGCATTTCTTCCCTT
CCCCACCAGAGTCCGGACCTCGGAAAGGCCGCATGGATATGCTCGCGCGA
GGGAGATGATCGTTGTTCGTTCTCACGAAAGATCGATGTCGACGGGATGA
TGCGCGTGGGCAACAGGTATCATTACACTGGCACAAAGGAAGATCTTCAA
TCTTCGAGGTTAGTGATCGAAGGTTCGTTGTTACGGCTCTCGCTATTCCA
GTCTGGGTTGGTAGTCTAG
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