mRNA_P-littoralis_Contig151.71.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig151.71.1
Unique NamemRNA_P-littoralis_Contig151.71.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig151.71.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig151contigP-littoralis_Contig151:386396..386954 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size204
Hectar predicted targeting categoryother localisation
Exons2
Cds size204
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789720.5204272-CDS-P-littoralis_Contig151:386395..3864661680789720.5204272-CDS-P-littoralis_Contig151:386395..386466Pylaiella littoralis U1_48CDSP-littoralis_Contig151 386396..386466 -
1680789720.5336885-CDS-P-littoralis_Contig151:386821..3869541680789720.5336885-CDS-P-littoralis_Contig151:386821..386954Pylaiella littoralis U1_48CDSP-littoralis_Contig151 386822..386954 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig151.71.1prot_P-littoralis_Contig151.71.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig151 386396..386954 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig151.71.1

>prot_P-littoralis_Contig151.71.1 ID=prot_P-littoralis_Contig151.71.1|Name=mRNA_P-littoralis_Contig151.71.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=68bp
RVRPLQSLTATVYIRDDGFEGFSPIFRVFPSSIIVPSLIFSVDIRYLLTH
VCFITLRKEPGRRVSVG*
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mRNA from alignment at P-littoralis_Contig151:386396..386954-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig151.71.1 ID=mRNA_P-littoralis_Contig151.71.1|Name=mRNA_P-littoralis_Contig151.71.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=559bp|location=Sequence derived from alignment at P-littoralis_Contig151:386396..386954- (Pylaiella littoralis U1_48)
AGAGTGCGGCCGTTGCAGTCTTTGACAGCGACGGTTTATATTCGTGATGA
TGGGTTCGAAGGTTTTTCGCCCATTTTTCGGGTTTTCCCCTCGAGTATTA
TTGTTCCGAGTTTGATATTTTCAGTAGATATACCGGTCGCCCCGGTGATT
CAGTTGGTTATCCACGCAACCTTCTGACATTCACGCGTGAGTCCAAATCC
CAGTGTAGTGACACGATCTTGGTTTTTTTCTCACATTGCGCGTGATAGTG
GAAAGCGATCAATTCGTGAGTAAACAAAATTTGATCGTACCATCGACGAG
GGAAAGGGGTTGCTGTCCCCTTTCTCGCGATAAAAGCTCAACCAAAAAGG
CAAGCACGGCAAAGGGAAGTGGAGAAAAAAAAACAATCCTGTGTTGACTT
CCCCCTGTGTGACCCCGGTTGGAGCGTCTACCTACCCGAAAGATGTAGAG
TGGCGACCAATGAAAGGGATGACAACACACACACATACGGTACCTCTTGA
CCCACGTGTGCTTCATCACTTTGCGTAAGGAACCAGGGAGGAGGGTGTCC
GTGGGTTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig151:386396..386954-

>mRNA_P-littoralis_Contig151.71.1 ID=mRNA_P-littoralis_Contig151.71.1|Name=mRNA_P-littoralis_Contig151.71.1|organism=Pylaiella littoralis U1_48|type=CDS|length=204bp|location=Sequence derived from alignment at P-littoralis_Contig151:386396..386954- (Pylaiella littoralis U1_48)
AGAGTGCGGCCGTTGCAGTCTTTGACAGCGACGGTTTATATTCGTGATGA
TGGGTTCGAAGGTTTTTCGCCCATTTTTCGGGTTTTCCCCTCGAGTATTA
TTGTTCCGAGTTTGATATTTTCAGTAGATATACGGTACCTCTTGACCCAC
GTGTGCTTCATCACTTTGCGTAAGGAACCAGGGAGGAGGGTGTCCGTGGG
TTGA
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