mRNA_P-littoralis_Contig1508.12.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1508.12.1
Unique NamemRNA_P-littoralis_Contig1508.12.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1508.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1508contigP-littoralis_Contig1508:13397..14635 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size425
Hectar predicted targeting categoryother localisation
Exons3
Cds size423
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789720.3169768-CDS-P-littoralis_Contig1508:13398..134391680789720.3169768-CDS-P-littoralis_Contig1508:13398..13439Pylaiella littoralis U1_48CDSP-littoralis_Contig1508 13399..13439 -
1680789720.3279421-CDS-P-littoralis_Contig1508:13700..137751680789720.3279421-CDS-P-littoralis_Contig1508:13700..13775Pylaiella littoralis U1_48CDSP-littoralis_Contig1508 13701..13775 -
1680789720.3368623-CDS-P-littoralis_Contig1508:14328..146351680789720.3368623-CDS-P-littoralis_Contig1508:14328..14635Pylaiella littoralis U1_48CDSP-littoralis_Contig1508 14329..14635 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1508.12.1prot_P-littoralis_Contig1508.12.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1508 13399..14635 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1508.12.1

>prot_P-littoralis_Contig1508.12.1 ID=prot_P-littoralis_Contig1508.12.1|Name=mRNA_P-littoralis_Contig1508.12.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=141bp
HRGWCNRLVLDSAKCICGSVLAAGGCNKQVQCGMMYTEAVHIRPSTCTAV
LLYNSTHAWALLLRSRNSVTKGCLYGEDSGACPVTDGGPEECCWQLHRDD
DGGGKDVDLPCVWTRCWVSTNALKDEAAIVKPHFLLVVHRI
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mRNA from alignment at P-littoralis_Contig1508:13397..14635-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1508.12.1 ID=mRNA_P-littoralis_Contig1508.12.1|Name=mRNA_P-littoralis_Contig1508.12.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1239bp|location=Sequence derived from alignment at P-littoralis_Contig1508:13397..14635- (Pylaiella littoralis U1_48)
CATCGTGGGTGGTGCAATCGTTTGGTGTTGGATTCCGCAAAGTGTATATG
TGGATCGGTGCTGGCTGCTGGTGGCTGCAACAAGCAAGTGCAGTGTGGGA
TGATGTATACAGAAGCAGTGCATATCCGACCGAGCACTTGCACTGCTGTA
CTGCTGTACAACTCAACACATGCATGGGCACTGCTGCTGAGGTCGCGCAA
TAGTGTAACGAAGGGCTGTCTATACGGGGAAGATTCTGGTGCCTGCCCAG
TTACAGACGGAGGTCCAGAGGAATGCTGCTGGCAGCTTCACCGCGATGAC
GATGGAGGTGTGTTGTGTTGTGGTGTGCTGTGTTGGCTGTTTGATCTTGT
CATCTGGTACCCCTGCTGCTTGTCATGTGTGCGTGTGCCGTGCTGTGCTC
GTCACCCGCGGCAGGGCAATGAACTGCCTTGCTCGATTGCTGTGTAGATT
GCACAGCGTCACGAAGGGCTATAGCGAGGATGGATTTTATTCTACATACT
TCGAAGTATGTGTATAGGTATCTTGTTGTGCAGCAGGACGTACGTGTTTG
ATAAATCTCTCCGCACCAACACACATGAACATGATGATACAATACGCCTG
TTTAGTCTGTAGCACAGCAGACAGCTGTATTCATATTCTACACAGCAGTA
TACTAGTGCTGTACCAGCACCCACCTGTGTATGGCCCGTACAGCAGTACT
TCTCTACACAGCAGTATACCAGTTATCTACTCATATTTGTCGAAAGAAAC
ACGCACGTGCAAATCATCGTCCTTGGTGATGTACGAGTACTCAACCAAAT
TCGAAGAAAGGAAGAAATACTGAACGAGCATCCATCTGTATGCTGAATGA
ATGTTGGCAGGTGGGAAGGATGTTGATCTGCCGTGTGTTTGGACCCGGTG
CTGGGTGTCTACAAACGCGTTGAAGGACGAAGCAGGTGAGATGGATGGGT
TCAAACCGTTGTTGCCTGATGCCGTGCCGGGCCGGATTGTGGGAATATCG
TGCCCTGTTGTCGAATTCTTGCGGCCACGATCGATGTTCAGGGAGTCTTT
CCCTCCCTCGTCAGATATGTCGGTATTATCGTTAGGTTGCTCAGTTGACT
TACTTTATATGCCTGGTATGTGTTTTTCAGTCGTTTATGCGGAGCACTTT
TGGATCAACATTGCTGTTACTTTGTCCTGCCCCCCGCCGCGAACAGCAAT
CGTGAAGCCTCATTTTCTCCTGGTGGTTCATCGGATACC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1508:13397..14635-

>mRNA_P-littoralis_Contig1508.12.1 ID=mRNA_P-littoralis_Contig1508.12.1|Name=mRNA_P-littoralis_Contig1508.12.1|organism=Pylaiella littoralis U1_48|type=CDS|length=423bp|location=Sequence derived from alignment at P-littoralis_Contig1508:13397..14635- (Pylaiella littoralis U1_48)
CATCGTGGGTGGTGCAATCGTTTGGTGTTGGATTCCGCAAAGTGTATATG
TGGATCGGTGCTGGCTGCTGGTGGCTGCAACAAGCAAGTGCAGTGTGGGA
TGATGTATACAGAAGCAGTGCATATCCGACCGAGCACTTGCACTGCTGTA
CTGCTGTACAACTCAACACATGCATGGGCACTGCTGCTGAGGTCGCGCAA
TAGTGTAACGAAGGGCTGTCTATACGGGGAAGATTCTGGTGCCTGCCCAG
TTACAGACGGAGGTCCAGAGGAATGCTGCTGGCAGCTTCACCGCGATGAC
GATGGAGGTGGGAAGGATGTTGATCTGCCGTGTGTTTGGACCCGGTGCTG
GGTGTCTACAAACGCGTTGAAGGACGAAGCAGCAATCGTGAAGCCTCATT
TTCTCCTGGTGGTTCATCGGATA
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