mRNA_P-littoralis_Contig1505.1.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1505.1.2
Unique NamemRNA_P-littoralis_Contig1505.1.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1505.1.2 vs. uniprot
Match: A0A6H5KTJ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTJ3_9PHAE)

HSP 1 Score: 148 bits (374), Expect = 5.360e-37
Identity = 109/302 (36.09%), Postives = 154/302 (50.99%), Query Frame = 3 
Query:    3 LPEVSESVVADCLTEGRSVDIRPT-RVLYRGMQRAMDLGAAGGLSGALVWKEDGSSSGHMWVRLRIQASMNPHYYNAYVKLAVVRIAGTRSFEAPDDCDSEAEDEESDSDISVVDGGEEIWRLLATRVLAALCKCKAGRKELCHYVCMILQLMRLLHMSIREVNDFNPVTPTGRPCQWILNHCRGGREAAENTWWGMVLPEMAEKSRQIRDPRGQE--GFGEYTPVDTRGVVKGNRQ-DFVPYPAGGVWAERHKHHVDGRSISLVEKATFDVLPDAVRSTKQ--RRGRRSLATDVLPPLVRR 890
            LPE++   +       R   I  T RVLYRGM+R +DLGA G LSG       G + G + +RL  + SM    Y     + V R+         D+ DS + D  SD DI          RL+AT V AA C+C++G    CH+VC +LQL+RLL ++  E+  ++P +PT   CQWIL HC GGR    + + G  + E+  + R +RDP+     G G+  P  TRGVV  +R+ +F  +P  G WA   +    G S+S    A +D+L   +   +     G  SLA DVL P +RR
Sbjct:  188 LPELAGDTIIIAWLRARGSLIGDTGRVLYRGMERVLDLGALGWLSGIPC----GENGGTLHLRLNSRGSMRDKEYLVQADVRVERVDVVAQHPDVDEGDSNSSDGRSDDDIR--------RRLVATCVEAAWCQCQSGAGGGCHHVCQLLQLVRLLQLTEHELETWDPDSPTSVACQWILRHCGGGRNTEFDIFNGATVREVVGELRTLRDPKRVPFGGGGDDVP-STRGVVAMDRRTEFSSHPDHGKWASAREDFDGGESMS---HAQWDMLSRFIDGERVPGAGGSTSLAVDVLRPRLRR 473
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1505.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KTJ3_9PHAE5.360e-3736.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1505contigP-littoralis_Contig1505:5394..6696 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G0K2
PFAMsXPG_I,XPG_N
Model size1067
Max annot lvl2759|Eukaryota
KEGG koko:K10746
KEGG Pathwayko03430,map03430
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.71e-25
EggNOG OGsCOG0258@1|root,KOG2518@2759|Eukaryota
Description5'-3' exodeoxyribonuclease activity
Cds size816
COG categoryL
BRITEko00000,ko00001,ko01000,ko03032,ko03400
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789719.8537428-UTR-P-littoralis_Contig1505:5393..55521680789719.8537428-UTR-P-littoralis_Contig1505:5393..5552Pylaiella littoralis U1_48UTRP-littoralis_Contig1505 5394..5552 -
1680789719.884967-UTR-P-littoralis_Contig1505:6604..66961680789719.884967-UTR-P-littoralis_Contig1505:6604..6696Pylaiella littoralis U1_48UTRP-littoralis_Contig1505 6605..6696 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789719.8646405-CDS-P-littoralis_Contig1505:5552..62671680789719.8646405-CDS-P-littoralis_Contig1505:5552..6267Pylaiella littoralis U1_48CDSP-littoralis_Contig1505 5553..6267 -
1680789719.8745234-CDS-P-littoralis_Contig1505:6503..66041680789719.8745234-CDS-P-littoralis_Contig1505:6503..6604Pylaiella littoralis U1_48CDSP-littoralis_Contig1505 6504..6604 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1505.1.2prot_P-littoralis_Contig1505.1.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1505 5553..6604 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1505.1.2

>prot_P-littoralis_Contig1505.1.2 ID=prot_P-littoralis_Contig1505.1.2|Name=mRNA_P-littoralis_Contig1505.1.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=272bp
MQRAMDLGAAGGLSGALVWKEDGSSSGHMWVRLRIQASMNPHYYNAYVKL
AVVRIAGTRSFEAPDDCDSEAEDEESDSDISVVDGGEEIWRLLATRVLAA
LCKCKAGRKELCHYVCMILQLMRLLHMSIREVNDFNPVTPTGRPCQWILN
HCRGGREAAENTWWGMVLPEMAEKSRQIRDPRGQEGFGEYTPVDTRGVVK
GNRQDFVPYPAGGVWAERHKHHVDGRSISLVEKATFDVLPDAVRSTKQRR
GRRSLATDVLPPLVRRLDINT*
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mRNA from alignment at P-littoralis_Contig1505:5394..6696-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1505.1.2 ID=mRNA_P-littoralis_Contig1505.1.2|Name=mRNA_P-littoralis_Contig1505.1.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=1303bp|location=Sequence derived from alignment at P-littoralis_Contig1505:5394..6696- (Pylaiella littoralis U1_48)
CTCTCCCGGAGGTATCTGAGTCTGTTGTCGCCGATTGTCTCACGGAGGGT
CGATCTGTTGACATACGGCCGACACGGGTGTTGTATCGGGGAATGCAGAG
GGCAATGGATCTCGGCGCAGCTGGAGGGCTATCGGGAGCGTTGGTGTGGA
AAGAGGACGGCAGCAGCAGCGGACATATGTGGGTTCGCCTGCGGTGAGTG
TTGAATTTTTCGTTTTGCACGCAGTAGGCGACGTCAAATATTATCCCTTT
GTTGGCTCTTTTAAGTCTGCTGCTCTCCCATGCAACTTCATGCATTGTAG
TCGCCGCAAAACGTTCGAGGGAAGTGCTGAACAAATGAAAAAATGTACCT
GGTATCTTTCTCGATATAATCACGGTGCATGACAGCCCCCACCCGGCTTC
GTGTTTTCTCCTTGCGGCAACTAACACAGGATACAAGCGTCGATGAATCC
TCACTACTACAACGCATACGTGAAGCTTGCAGTCGTGAGGATCGCGGGAA
CCCGGTCGTTTGAAGCTCCTGACGACTGTGATTCAGAAGCTGAGGACGAG
GAAAGCGATAGCGACATATCCGTAGTCGACGGCGGGGAGGAGATTTGGAG
ACTCCTGGCGACGAGGGTTCTGGCGGCGTTGTGTAAATGCAAAGCAGGGA
GGAAAGAACTGTGCCACTACGTGTGTATGATTCTACAGCTTATGAGGCTG
TTGCATATGTCGATCCGAGAGGTGAACGACTTTAACCCTGTCACCCCAAC
CGGTCGGCCATGTCAGTGGATTCTAAATCACTGCCGTGGTGGCAGGGAAG
CGGCGGAGAACACATGGTGGGGTATGGTGCTGCCTGAGATGGCCGAAAAG
TCTAGACAGATCAGGGACCCTAGGGGACAGGAGGGTTTCGGGGAGTACAC
TCCTGTCGACACGCGGGGCGTGGTTAAAGGGAACAGACAGGACTTCGTAC
CATACCCGGCGGGAGGTGTGTGGGCAGAGCGGCACAAACACCATGTTGAC
GGCCGAAGCATCAGTTTAGTGGAAAAGGCTACGTTCGACGTGTTACCGGA
TGCAGTCCGCAGCACAAAGCAACGCCGTGGGCGTCGTAGTTTGGCGACTG
ACGTGTTGCCGCCTCTTGTTCGGCGATTAGATATTAATACTTGATTTCCC
GGTCCGGTACCCACGATATAGTTCTAGATTGCAGTGACCTTCCGTATAGC
ATTCGGGTTGGCCCACCTGTCAGAGACGGTCGTACCGATTCACACCAGGT
GTTGGACTCAGCCGTGATGACATATTGTTTGTATTGGGAAGCAGTCAACG
GCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1505:5394..6696-

>mRNA_P-littoralis_Contig1505.1.2 ID=mRNA_P-littoralis_Contig1505.1.2|Name=mRNA_P-littoralis_Contig1505.1.2|organism=Pylaiella littoralis U1_48|type=CDS|length=816bp|location=Sequence derived from alignment at P-littoralis_Contig1505:5394..6696- (Pylaiella littoralis U1_48)
ATGCAGAGGGCAATGGATCTCGGCGCAGCTGGAGGGCTATCGGGAGCGTT
GGTGTGGAAAGAGGACGGCAGCAGCAGCGGACATATGTGGGTTCGCCTGC
GGATACAAGCGTCGATGAATCCTCACTACTACAACGCATACGTGAAGCTT
GCAGTCGTGAGGATCGCGGGAACCCGGTCGTTTGAAGCTCCTGACGACTG
TGATTCAGAAGCTGAGGACGAGGAAAGCGATAGCGACATATCCGTAGTCG
ACGGCGGGGAGGAGATTTGGAGACTCCTGGCGACGAGGGTTCTGGCGGCG
TTGTGTAAATGCAAAGCAGGGAGGAAAGAACTGTGCCACTACGTGTGTAT
GATTCTACAGCTTATGAGGCTGTTGCATATGTCGATCCGAGAGGTGAACG
ACTTTAACCCTGTCACCCCAACCGGTCGGCCATGTCAGTGGATTCTAAAT
CACTGCCGTGGTGGCAGGGAAGCGGCGGAGAACACATGGTGGGGTATGGT
GCTGCCTGAGATGGCCGAAAAGTCTAGACAGATCAGGGACCCTAGGGGAC
AGGAGGGTTTCGGGGAGTACACTCCTGTCGACACGCGGGGCGTGGTTAAA
GGGAACAGACAGGACTTCGTACCATACCCGGCGGGAGGTGTGTGGGCAGA
GCGGCACAAACACCATGTTGACGGCCGAAGCATCAGTTTAGTGGAAAAGG
CTACGTTCGACGTGTTACCGGATGCAGTCCGCAGCACAAAGCAACGCCGT
GGGCGTCGTAGTTTGGCGACTGACGTGTTGCCGCCTCTTGTTCGGCGATT
AGATATTAATACTTGA
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