mRNA_P-littoralis_Contig1504.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1504.3.1
Unique NamemRNA_P-littoralis_Contig1504.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1504.3.1 vs. uniprot
Match: A0A6H5JN01_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN01_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 7.100e-21
Identity = 45/65 (69.23%), Postives = 51/65 (78.46%), Query Frame = 1 
Query:    1 LGDTGAVIHAVSNDEHVYNRRAPRRGETLLMVGDGECLPVSCFGDLDLVLHCRYDVRVTLRNVAV 195
            +GD+GAVIHAVS+ E VYNR  P   E  LMVGDG C+PVS FGDLDL+LHC  DV VTL+NVAV
Sbjct:   94 MGDSGAVIHAVSSGEKVYNRGEPGPDERRLMVGDGACMPVSFFGDLDLLLHCDEDVLVTLKNVAV 158
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BLAST of mRNA_P-littoralis_Contig1504.3.1 vs. uniprot
Match: A0A6H5JCD8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCD8_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 2.840e-16
Identity = 34/66 (51.52%), Postives = 45/66 (68.18%), Query Frame = 1 
Query:    1 LGDTGAVIHAVSNDEHVYNRRAPRRGETLLMVGDGECLPVSCFGDLDLVLHCRYDVRVTLRNVAVV 198
            +GD+ + +HA S+  HVYN R P   ET L +GDG  L   CFG LD+V HCR DV VT++++AVV
Sbjct:   17 IGDSASTVHATSDGTHVYNTRPPLAEETFLFIGDGRKLKAECFGSLDVVFHCREDVLVTMKDIAVV 82
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1504.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JN01_9PHAE7.100e-2169.23Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JCD8_9PHAE2.840e-1651.52Integrase catalytic domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1504contigP-littoralis_Contig1504:14129..14326 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size198
Hectar predicted targeting categoryother localisation
Exons1
Cds size198
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789719.8174565-CDS-P-littoralis_Contig1504:14128..143261680789719.8174565-CDS-P-littoralis_Contig1504:14128..14326Pylaiella littoralis U1_48CDSP-littoralis_Contig1504 14129..14326 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1504.3.1prot_P-littoralis_Contig1504.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1504 14129..14326 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1504.3.1

>prot_P-littoralis_Contig1504.3.1 ID=prot_P-littoralis_Contig1504.3.1|Name=mRNA_P-littoralis_Contig1504.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=66bp
LGDTGAVIHAVSNDEHVYNRRAPRRGETLLMVGDGECLPVSCFGDLDLVL
HCRYDVRVTLRNVAVV
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mRNA from alignment at P-littoralis_Contig1504:14129..14326-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1504.3.1 ID=mRNA_P-littoralis_Contig1504.3.1|Name=mRNA_P-littoralis_Contig1504.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=198bp|location=Sequence derived from alignment at P-littoralis_Contig1504:14129..14326- (Pylaiella littoralis U1_48)
CTGGGAGACACGGGCGCGGTAATTCATGCCGTTTCCAACGATGAACACGT
CTATAATCGGCGTGCGCCGCGCCGCGGAGAGACGCTTCTCATGGTGGGTG
ACGGGGAGTGTCTGCCTGTATCGTGCTTTGGGGATTTGGACCTGGTGCTT
CATTGCCGTTACGACGTGCGGGTGACTCTGCGCAACGTAGCGGTCGTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1504:14129..14326-

>mRNA_P-littoralis_Contig1504.3.1 ID=mRNA_P-littoralis_Contig1504.3.1|Name=mRNA_P-littoralis_Contig1504.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=198bp|location=Sequence derived from alignment at P-littoralis_Contig1504:14129..14326- (Pylaiella littoralis U1_48)
CTGGGAGACACGGGCGCGGTAATTCATGCCGTTTCCAACGATGAACACGT
CTATAATCGGCGTGCGCCGCGCCGCGGAGAGACGCTTCTCATGGTGGGTG
ACGGGGAGTGTCTGCCTGTATCGTGCTTTGGGGATTTGGACCTGGTGCTT
CATTGCCGTTACGACGTGCGGGTGACTCTGCGCAACGTAGCGGTCGTC
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