mRNA_P-littoralis_Contig1502.16.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1502.16.1
Unique NamemRNA_P-littoralis_Contig1502.16.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1502.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1502contigP-littoralis_Contig1502:14062..14343 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size256
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size171
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789719.5479515-UTR-P-littoralis_Contig1502:14061..140711680789719.5479515-UTR-P-littoralis_Contig1502:14061..14071Pylaiella littoralis U1_48UTRP-littoralis_Contig1502 14062..14071 +
1680789719.5874772-UTR-P-littoralis_Contig1502:14268..143431680789719.5874772-UTR-P-littoralis_Contig1502:14268..14343Pylaiella littoralis U1_48UTRP-littoralis_Contig1502 14269..14343 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789719.559886-CDS-P-littoralis_Contig1502:14071..141401680789719.559886-CDS-P-littoralis_Contig1502:14071..14140Pylaiella littoralis U1_48CDSP-littoralis_Contig1502 14072..14140 +
1680789719.5773308-CDS-P-littoralis_Contig1502:14166..142681680789719.5773308-CDS-P-littoralis_Contig1502:14166..14268Pylaiella littoralis U1_48CDSP-littoralis_Contig1502 14167..14268 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1502.16.1prot_P-littoralis_Contig1502.16.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1502 14072..14268 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1502.16.1

>prot_P-littoralis_Contig1502.16.1 ID=prot_P-littoralis_Contig1502.16.1|Name=mRNA_P-littoralis_Contig1502.16.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=57bp
MTREMVAEVVDSVSPAVALDIFSAACRRSFTCRDSRLDWSKRTGGAAKRQ
TSAQKG*
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mRNA from alignment at P-littoralis_Contig1502:14062..14343+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1502.16.1 ID=mRNA_P-littoralis_Contig1502.16.1|Name=mRNA_P-littoralis_Contig1502.16.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=282bp|location=Sequence derived from alignment at P-littoralis_Contig1502:14062..14343+ (Pylaiella littoralis U1_48)
TGGCCTTGCCATGACAAGAGAAATGGTGGCTGAAGTTGTAGATTCAGTAA
GCCCTGCAGTCGCACTAGATATTTTCTCTGCCGTACGGGAAGTGGCTGAT
AGTAGGCTGCGTGCCGAAGGAGTTTTACGTGTCGTGACTCCAGACTTGAC
TGGTCGAAGCGGACAGGGGGCGCTGCAAAACGCCAAACCAGCGCTCAAAA
AGGGTAGGAAAAAAAACAAAAGGCACAAGAGTTCGACGGAGCGAAGATGA
AGTTCTTCAAACTTTGTTGATAACTTCATTGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1502:14062..14343+

>mRNA_P-littoralis_Contig1502.16.1 ID=mRNA_P-littoralis_Contig1502.16.1|Name=mRNA_P-littoralis_Contig1502.16.1|organism=Pylaiella littoralis U1_48|type=CDS|length=171bp|location=Sequence derived from alignment at P-littoralis_Contig1502:14062..14343+ (Pylaiella littoralis U1_48)
ATGACAAGAGAAATGGTGGCTGAAGTTGTAGATTCAGTAAGCCCTGCAGT
CGCACTAGATATTTTCTCTGCTGCGTGCCGAAGGAGTTTTACGTGTCGTG
ACTCCAGACTTGACTGGTCGAAGCGGACAGGGGGCGCTGCAAAACGCCAA
ACCAGCGCTCAAAAAGGGTAG
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