mRNA_P-littoralis_Contig1502.10.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1502.10.1
Unique NamemRNA_P-littoralis_Contig1502.10.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1502.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1502contigP-littoralis_Contig1502:8851..9073 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size165
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size132
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789719.4877288-CDS-P-littoralis_Contig1502:8850..89371680789719.4877288-CDS-P-littoralis_Contig1502:8850..8937Pylaiella littoralis U1_48CDSP-littoralis_Contig1502 8851..8937 +
1680789719.5028434-CDS-P-littoralis_Contig1502:8995..90401680789719.5028434-CDS-P-littoralis_Contig1502:8995..9040Pylaiella littoralis U1_48CDSP-littoralis_Contig1502 8996..9040 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789719.513696-UTR-P-littoralis_Contig1502:9040..90731680789719.513696-UTR-P-littoralis_Contig1502:9040..9073Pylaiella littoralis U1_48UTRP-littoralis_Contig1502 9041..9073 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1502.10.1prot_P-littoralis_Contig1502.10.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1502 8851..9040 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1502.10.1

>prot_P-littoralis_Contig1502.10.1 ID=prot_P-littoralis_Contig1502.10.1|Name=mRNA_P-littoralis_Contig1502.10.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=44bp
TVYVFDLLTPTNVYFELRCVRSTFPGIMPVWKCTVTYGKGPPG*
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mRNA from alignment at P-littoralis_Contig1502:8851..9073+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1502.10.1 ID=mRNA_P-littoralis_Contig1502.10.1|Name=mRNA_P-littoralis_Contig1502.10.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=223bp|location=Sequence derived from alignment at P-littoralis_Contig1502:8851..9073+ (Pylaiella littoralis U1_48)
ACTGTGTATGTGTTTGATTTGCTGACTCCAACAAACGTGTATTTTGAGTT
AAGATGTGTCCGAAGTACATTTCCAGGGATCATGCCGGTATCGATTTTTG
ATGCTGGGCACAAATAATGTCGTACTCAACCTCTATGGTATGGAGGTATG
GAAATGTACGGTAACCTACGGTAAAGGACCACCGGGGTAACGCTACCGTG
TGGTCCTCGACCCTATACGTAGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1502:8851..9073+

>mRNA_P-littoralis_Contig1502.10.1 ID=mRNA_P-littoralis_Contig1502.10.1|Name=mRNA_P-littoralis_Contig1502.10.1|organism=Pylaiella littoralis U1_48|type=CDS|length=132bp|location=Sequence derived from alignment at P-littoralis_Contig1502:8851..9073+ (Pylaiella littoralis U1_48)
ACTGTGTATGTGTTTGATTTGCTGACTCCAACAAACGTGTATTTTGAGTT
AAGATGTGTCCGAAGTACATTTCCAGGGATCATGCCGGTATGGAAATGTA
CGGTAACCTACGGTAAAGGACCACCGGGGTAA
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