mRNA_P-littoralis_Contig1501.7.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig1501.7.1 vs. uniprot
Match: A0A2D8LMT2_9FLAO (DNA topoisomerase I n=2 Tax=Flavobacteriaceae bacterium TaxID=1871037 RepID=A0A2D8LMT2_9FLAO) HSP 1 Score: 355 bits (911), Expect = 2.730e-118 Identity = 179/192 (93.23%), Postives = 182/192 (94.79%), Query Frame = 3
Query: 33 AKLANLVYVTDNKLTIKRHRHGRGFYYTQNGEKIVDRKSIKRFKSLVIPPAWNDVKITHLENGHLQVVGRDEKNRKQYRYHPSWSEIKNKTKFF*DDCLRKLLPSIREQVSKDLQLKVMTKRKCLALVLRLMEETHIRVGNDYYAKKNKTYGLSTMRTKHLDVLDQGLKFEFVGKKGKKHAVEVKNKKAAEI 608
AKLANLVYVTDNKLTIKRHRHGRGFYYTQNGEKIVDRKSIKRFKSLVIPPAWNDVKITHLENGHLQVVGRDEKNRKQYRYHPSWSEIKNKTKFF LPSIREQVSKDLQLKVMTKRKCLALVLRLMEETHIRVGNDYYAKKNKTYGLSTMRTKHLDVLDQGLKFEFVGKKGKKHAVEVKNK+ ++
Sbjct: 19 AKLANLVYVTDNKLTIKRHRHGRGFYYTQNGEKIVDRKSIKRFKSLVIPPAWNDVKITHLENGHLQVVGRDEKNRKQYRYHPSWSEIKNKTKFFKMIAFGNSLPSIREQVSKDLQLKVMTKRKCLALVLRLMEETHIRVGNDYYAKKNKTYGLSTMRTKHLDVLDQGLKFEFVGKKGKKHAVEVKNKRLRKL 210
BLAST of mRNA_P-littoralis_Contig1501.7.1 vs. uniprot
Match: A0A370QGB1_9FLAO (DNA topoisomerase-1 n=1 Tax=Marinirhabdus gelatinilytica TaxID=1703343 RepID=A0A370QGB1_9FLAO) HSP 1 Score: 311 bits (796), Expect = 6.820e-101 Identity = 151/192 (78.65%), Postives = 168/192 (87.50%), Query Frame = 3
Query: 33 AKLANLVYVTDNKLTIKRHRHGRGFYYTQNGEKIVDRKSIKRFKSLVIPPAWNDVKITHLENGHLQVVGRDEKNRKQYRYHPSWSEIKNKTKFF*DDCLRKLLPSIREQVSKDLQLKVMTKRKCLALVLRLMEETHIRVGNDYYAKKNKTYGLSTMRTKHLDVLDQGLKFEFVGKKGKKHAVEVKNKKAAEI 608
AKLANL+YVTDNKLTIKRH+HGRGFYYT+NGEKIVD+KSI+RFKSLVIPPAW V+ITHL NGHLQVVGRDEKNRKQYRYHPSWSEIKNKTKFF +LP IR Q+ KDL LK MTKRKCLALVL+LMEETHIR+GN+YYAKKNK+YGLSTMRTKHLD + +KFEFVGKKGKKH V V NK+ ++
Sbjct: 19 AKLANLIYVTDNKLTIKRHKHGRGFYYTKNGEKIVDKKSIERFKSLVIPPAWTKVRITHLNNGHLQVVGRDEKNRKQYRYHPSWSEIKNKTKFFKMTAFGNVLPKIRAQIEKDLSLKKMTKRKCLALVLKLMEETHIRIGNEYYAKKNKSYGLSTMRTKHLDSSGKSIKFEFVGKKGKKHEVSVNNKRLKKL 210
BLAST of mRNA_P-littoralis_Contig1501.7.1 vs. uniprot
Match: UPI000DF28A67 (DNA topoisomerase IB n=1 Tax=Candidatus Ulvibacter alkanivorans TaxID=2267620 RepID=UPI000DF28A67) HSP 1 Score: 308 bits (789), Expect = 7.290e-100 Identity = 147/192 (76.56%), Postives = 173/192 (90.10%), Query Frame = 3
Query: 33 AKLANLVYVTDNKLTIKRHRHGRGFYYTQNGEKIVDRKSIKRFKSLVIPPAWNDVKITHLENGHLQVVGRDEKNRKQYRYHPSWSEIKNKTKFF*DDCLRKLLPSIREQVSKDLQLKVMTKRKCLALVLRLMEETHIRVGNDYYAKKNKTYGLSTMRTKHLDVLDQGLKFEFVGKKGKKHAVEVKNKKAAEI 608
A+LANLVY+TDNKLTIKRHRHGRGFYYTQ+GEKIVD +IKRFK+LVIPPAWNDV+ITHL+NGHLQVVGRDEKNRKQYRYHP WS+++NKTKFF +LP IR+Q+ DL+LK M+KRKCLALVLRLMEETHIR+GNDYYA+KNKTYGLSTMRT+H+DVL+ +KFEFVGKKGK+H+V VKNK+ ++
Sbjct: 19 AELANLVYITDNKLTIKRHRHGRGFYYTQDGEKIVDPSAIKRFKALVIPPAWNDVRITHLKNGHLQVVGRDEKNRKQYRYHPHWSQLRNKTKFFKMMAFGNVLPHIRKQIDADLRLKRMSKRKCLALVLRLMEETHIRIGNDYYAEKNKTYGLSTMRTRHMDVLNNKIKFEFVGKKGKQHSVSVKNKRLRKL 210
BLAST of mRNA_P-littoralis_Contig1501.7.1 vs. uniprot
Match: A0A167G7G2_9FLAO (DNA topoisomerase I n=1 Tax=Cochleicola gelatinilyticus TaxID=1763537 RepID=A0A167G7G2_9FLAO) HSP 1 Score: 300 bits (769), Expect = 7.400e-97 Identity = 144/188 (76.60%), Postives = 166/188 (88.30%), Query Frame = 3
Query: 33 AKLANLVYVTDNKLTIKRHRHGRGFYYTQNGEKIVDRKSIKRFKSLVIPPAWNDVKITHLENGHLQVVGRDEKNRKQYRYHPSWSEIKNKTKFF*DDCLRKLLPSIREQVSKDLQLKVMTKRKCLALVLRLMEETHIRVGNDYYAKKNKTYGLSTMRTKHLDVLDQGLKFEFVGKKGKKHAVEVKNKK 596
A+LANL+YVTDNKLTI+RHRHG+GFYYT GEKIVD+ S+KRFK LVIPPAWNDV ITHL+NGHLQVVGRDEKNRKQYRYHP WS+I+N+TK+F +LP +R Q+ KDL+LK M+KRKCLALVLRLMEETHIR+GN+YYAKKNKTYGLST+RTKHLD+ LKFEFVGKKGKKH+V +KNKK
Sbjct: 19 AELANLIYVTDNKLTIRRHRHGKGFYYTSQGEKIVDKPSLKRFKDLVIPPAWNDVYITHLKNGHLQVVGRDEKNRKQYRYHPHWSKIRNQTKYFKMASFGNVLPEMRAQIEKDLRLKRMSKRKCLALVLRLMEETHIRIGNEYYAKKNKTYGLSTLRTKHLDIKKNKLKFEFVGKKGKKHSVTLKNKK 206
BLAST of mRNA_P-littoralis_Contig1501.7.1 vs. uniprot
Match: A0A7G8PX51_9FLAO (DNA topoisomerase I n=1 Tax=Constantimarinum furrinae TaxID=2562285 RepID=A0A7G8PX51_9FLAO) HSP 1 Score: 299 bits (766), Expect = 2.390e-96 Identity = 145/192 (75.52%), Postives = 165/192 (85.94%), Query Frame = 3
Query: 33 AKLANLVYVTDNKLTIKRHRHGRGFYYTQNGEKIVDRKSIKRFKSLVIPPAWNDVKITHLENGHLQVVGRDEKNRKQYRYHPSWSEIKNKTKFF*DDCLRKLLPSIREQVSKDLQLKVMTKRKCLALVLRLMEETHIRVGNDYYAKKNKTYGLSTMRTKHLDVLDQGLKFEFVGKKGKKHAVEVKNKKAAEI 608
AK+ANL+Y+T+ KLTIKRHRHGRGFYYT+N EKI + +KR KSLVIPPAW DV+ITHL+NGHLQVVGRDEKNRKQY+YHP+WSEIKNKTK+F +LP IR Q+ DL+LK MTKRKCLALVLRLMEETHIR+GN YYAKKNKTYGLSTMR KHLDVL +KFEFVGKKGKKHAVEVK+KK ++
Sbjct: 19 AKMANLIYITEKKLTIKRHRHGRGFYYTRNKEKIKSKTDLKRIKSLVIPPAWEDVRITHLKNGHLQVVGRDEKNRKQYQYHPAWSEIKNKTKYFKMTAFGAVLPKIRSQIEADLKLKTMTKRKCLALVLRLMEETHIRIGNAYYAKKNKTYGLSTMRMKHLDVLKHKIKFEFVGKKGKKHAVEVKDKKLRKL 210
BLAST of mRNA_P-littoralis_Contig1501.7.1 vs. uniprot
Match: A0A2D9N1Q2_9FLAO (DNA topoisomerase I n=2 Tax=Altibacter TaxID=1535231 RepID=A0A2D9N1Q2_9FLAO) HSP 1 Score: 288 bits (736), Expect = 7.280e-92 Identity = 134/192 (69.79%), Postives = 166/192 (86.46%), Query Frame = 3
Query: 33 AKLANLVYVTDNKLTIKRHRHGRGFYYTQNGEKIVDRKSIKRFKSLVIPPAWNDVKITHLENGHLQVVGRDEKNRKQYRYHPSWSEIKNKTKFF*DDCLRKLLPSIREQVSKDLQLKVMTKRKCLALVLRLMEETHIRVGNDYYAKKNKTYGLSTMRTKHLDVLDQGLKFEFVGKKGKKHAVEVKNKKAAEI 608
A++ANL+Y+T+NKLTI+RHRHGRGFYYT G+K+ D+KS++RFK LVIPPAW DV+ITHL+NGHLQVVGRDEKNRKQYRYHP WS+++NKTKFF +LP++R QVS+DL+L M+KRKCLALVLRLMEETHIR+GNDYYA++NKTYGLST+RTKHL++ KF F GKKGKKH+V V+NKK ++
Sbjct: 19 AQVANLIYITENKLTIQRHRHGRGFYYTFKGDKVSDKKSLQRFKELVIPPAWEDVRITHLQNGHLQVVGRDEKNRKQYRYHPHWSQLRNKTKFFKMAAFGNILPAVRAQVSRDLKLPKMSKRKCLALVLRLMEETHIRIGNDYYAQRNKTYGLSTLRTKHLNIDRNQFKFNFTGKKGKKHSVTVRNKKLRKL 210
BLAST of mRNA_P-littoralis_Contig1501.7.1 vs. uniprot
Match: UPI001CA8557E (DNA topoisomerase IB n=1 Tax=Marixanthomonas sp. SCSIO 43207 TaxID=2779360 RepID=UPI001CA8557E) HSP 1 Score: 285 bits (730), Expect = 5.850e-91 Identity = 138/192 (71.88%), Postives = 163/192 (84.90%), Query Frame = 3
Query: 33 AKLANLVYVTDNKLTIKRHRHGRGFYYTQNGEKIVDRKSIKRFKSLVIPPAWNDVKITHLENGHLQVVGRDEKNRKQYRYHPSWSEIKNKTKFF*DDCLRKLLPSIREQVSKDLQLKVMTKRKCLALVLRLMEETHIRVGNDYYAKKNKTYGLSTMRTKHLDVLDQGLKFEFVGKKGKKHAVEVKNKKAAEI 608
AKLA+LVY+T+NKLTI+RHRHGRGFYYT++G+KI + +IKRFKSLVIPPAWN+V IT LENGHLQVVGRDEKNRKQYRYHP WS+I+NKTKFF K LP IR+QV DL+L +MTKRKCLA+VL LMEETHIR+GN YYA NKTYGLSTMRTKHL+VL+ L F+F GKKGKKH + +K+KK ++
Sbjct: 19 AKLADLVYITENKLTIQRHRHGRGFYYTEHGKKIKSKSAIKRFKSLVIPPAWNEVFITPLENGHLQVVGRDEKNRKQYRYHPHWSQIRNKTKFFKMRAFGKSLPKIRKQVEDDLKLPIMTKRKCLAVVLHLMEETHIRIGNSYYANTNKTYGLSTMRTKHLEVLENKLLFQFTGKKGKKHKIVIKDKKMQDL 210
BLAST of mRNA_P-littoralis_Contig1501.7.1 vs. uniprot
Match: A0A7Y2F1G9_9FLAO (DNA topoisomerase IB n=1 Tax=Flavobacteriaceae bacterium TaxID=1871037 RepID=A0A7Y2F1G9_9FLAO) HSP 1 Score: 278 bits (712), Expect = 3.110e-88 Identity = 127/188 (67.55%), Postives = 162/188 (86.17%), Query Frame = 3
Query: 33 AKLANLVYVTDNKLTIKRHRHGRGFYYTQNGEKIVDRKSIKRFKSLVIPPAWNDVKITHLENGHLQVVGRDEKNRKQYRYHPSWSEIKNKTKFF*DDCLRKLLPSIREQVSKDLQLKVMTKRKCLALVLRLMEETHIRVGNDYYAKKNKTYGLSTMRTKHLDVLDQGLKFEFVGKKGKKHAVEVKNKK 596
A++A L+Y+TD KLTI+RHRHGRGFYYTQNGEKIVD+ +++RFKSL IPPAWN V+ITHLENGHLQVVGRD + RKQYRYHP W++ +N+ KF+ + + LP+IR+QV +DL+L MTKRKCLAL++RLMEETHIR+GN++YAK+NKTYGLST+RTKH+ +DQ +KF F GKKGKKH + ++NKK
Sbjct: 19 AEMAALIYITDPKLTIRRHRHGRGFYYTQNGEKIVDKSALRRFKSLAIPPAWNKVRITHLENGHLQVVGRDARGRKQYRYHPIWTQFRNRAKFYKMNAFGQALPNIRKQVEQDLELPRMTKRKCLALIIRLMEETHIRIGNEFYAKQNKTYGLSTLRTKHVKKIDQKMKFHFTGKKGKKHEITLRNKK 206
BLAST of mRNA_P-littoralis_Contig1501.7.1 vs. uniprot
Match: A0A3E1Q9N8_9FLAO (DNA topoisomerase IB n=1 Tax=Marixanthomonas ophiurae TaxID=387659 RepID=A0A3E1Q9N8_9FLAO) HSP 1 Score: 276 bits (706), Expect = 2.420e-87 Identity = 134/192 (69.79%), Postives = 161/192 (83.85%), Query Frame = 3
Query: 33 AKLANLVYVTDNKLTIKRHRHGRGFYYTQNGEKIVDRKSIKRFKSLVIPPAWNDVKITHLENGHLQVVGRDEKNRKQYRYHPSWSEIKNKTKFF*DDCLRKLLPSIREQVSKDLQLKVMTKRKCLALVLRLMEETHIRVGNDYYAKKNKTYGLSTMRTKHLDVLDQGLKFEFVGKKGKKHAVEVKNKKAAEI 608
A+LANLVY+T+ KLTI+RHRHGRGFYYT+NG+KI + +IKRFKSLVIPPAW DV IT L+NGHLQVVGRDEK RKQYRYHP WS+I+NKTKFF K LP IR+Q+ +DL+ M KRKCLA+VL LMEETHIR+GN YYAKKNK+YGLSTMRTKHL+VL+ L FEFVGKKGK+H + +K+K+ ++
Sbjct: 19 AELANLVYITEKKLTIQRHRHGRGFYYTKNGKKIKSKSAIKRFKSLVIPPAWTDVYITPLKNGHLQVVGRDEKKRKQYRYHPHWSQIRNKTKFFKMAEFGKTLPKIRKQIEEDLKRPKMDKRKCLAVVLHLMEETHIRIGNSYYAKKNKSYGLSTMRTKHLEVLENELLFEFVGKKGKEHRIPIKDKRLQKL 210
BLAST of mRNA_P-littoralis_Contig1501.7.1 vs. uniprot
Match: A0A5J4G0U4_9FLAO (DNA topoisomerase n=1 Tax=Patiriisocius marinistellae TaxID=2494560 RepID=A0A5J4G0U4_9FLAO) HSP 1 Score: 275 bits (702), Expect = 9.110e-87 Identity = 129/192 (67.19%), Postives = 164/192 (85.42%), Query Frame = 3
Query: 33 AKLANLVYVTDNKLTIKRHRHGRGFYYTQNGEKIVDRKSIKRFKSLVIPPAWNDVKITHLENGHLQVVGRDEKNRKQYRYHPSWSEIKNKTKFF*DDCLRKLLPSIREQVSKDLQLKVMTKRKCLALVLRLMEETHIRVGNDYYAKKNKTYGLSTMRTKHLDVLDQGLKFEFVGKKGKKHAVEVKNKKAAEI 608
AK ANL+Y+TDNKLTI+RH++GRGF+YT N KI D+KSIKRFK LVIPPAW DV+IT L NGHLQVVGRDEKNRKQYRYHPSWS+ +N+TKFF +LP IR QV KDL+ +VMTK KCLAL+++LMEETHIR+GN+YYAK+NKTYGLSTMRTKHL++ ++ L+F F+GKKGK+H++ ++++K ++
Sbjct: 19 AKYANLIYITDNKLTIQRHKYGRGFFYTLNEIKIKDKKSIKRFKGLVIPPAWKDVRITPLVNGHLQVVGRDEKNRKQYRYHPSWSKFRNETKFFKMVAFGNVLPKIRAQVEKDLEPEVMTKLKCLALIIKLMEETHIRIGNEYYAKRNKTYGLSTMRTKHLELQNKDLRFHFIGKKGKEHSISIQDQKLQKL 210 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1501.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1501.7.1 >prot_P-littoralis_Contig1501.7.1 ID=prot_P-littoralis_Contig1501.7.1|Name=mRNA_P-littoralis_Contig1501.7.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=87bp MPKTKKELKTNSLRAYDAAAEGLGNTRSVCKQYYVHPILPEMYEDGSIEFback to top mRNA from alignment at P-littoralis_Contig1501:13220..14284- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1501.7.1 ID=mRNA_P-littoralis_Contig1501.7.1|Name=mRNA_P-littoralis_Contig1501.7.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1065bp|location=Sequence derived from alignment at P-littoralis_Contig1501:13220..14284- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1501:13220..14284- >mRNA_P-littoralis_Contig1501.7.1 ID=mRNA_P-littoralis_Contig1501.7.1|Name=mRNA_P-littoralis_Contig1501.7.1|organism=Pylaiella littoralis U1_48|type=CDS|length=261bp|location=Sequence derived from alignment at P-littoralis_Contig1501:13220..14284- (Pylaiella littoralis U1_48)back to top |