mRNA_P-littoralis_Contig150.93.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig150.93.1
Unique NamemRNA_P-littoralis_Contig150.93.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig150.93.1 vs. uniprot
Match: A0A7D9E049_PARCT (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9E049_PARCT)

HSP 1 Score: 116 bits (291), Expect = 2.040e-29
Identity = 53/87 (60.92%), Postives = 66/87 (75.86%), Query Frame = 2 
Query:  407 FRGANLTVAQKTYNRELSKVRVSVEWQFGKIVALFPYVDFKQNLKIKLQAVAKYYAVAVLLTNAHTCLFGSITGEYFDMSAPSLEAY 667
            FRGANLT  QK +N+ +SKVRVSVEW FGKI   F Y+DFK+NLK+ LQ VAKYY V  L+TN HTCL+GS++  +F++  P LE Y
Sbjct:   68 FRGANLTEDQKKFNKRMSKVRVSVEWGFGKICTYFAYLDFKKNLKVLLQPVAKYYIVGALMTNCHTCLYGSLSTTFFEVDPPCLETY 154
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BLAST of mRNA_P-littoralis_Contig150.93.1 vs. uniprot
Match: UPI001CF3474D (uncharacterized protein LOC114950185 isoform X3 n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF3474D)

HSP 1 Score: 115 bits (289), Expect = 5.370e-29
Identity = 52/87 (59.77%), Postives = 66/87 (75.86%), Query Frame = 2 
Query:  407 FRGANLTVAQKTYNRELSKVRVSVEWQFGKIVALFPYVDFKQNLKIKLQAVAKYYAVAVLLTNAHTCLFGSITGEYFDMSAPSLEAY 667
            FRGA+LT  Q+ +N E++K R+ VEW FGKI+  F Y+DF++NLK+ LQ VAKYY V  LL N HTCL+GS+TG YFD+  PSLE Y
Sbjct:   78 FRGAHLTRPQQLFNAEMNKCRICVEWGFGKILQYFTYLDFQRNLKVLLQPVAKYYLVGALLINCHTCLYGSLTGTYFDLEPPSLETY 164
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BLAST of mRNA_P-littoralis_Contig150.93.1 vs. uniprot
Match: A0A6S7L092_PARCT (DDE Tnp4 domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7L092_PARCT)

HSP 1 Score: 117 bits (293), Expect = 1.540e-28
Identity = 55/87 (63.22%), Postives = 65/87 (74.71%), Query Frame = 2 
Query:  407 FRGANLTVAQKTYNRELSKVRVSVEWQFGKIVALFPYVDFKQNLKIKLQAVAKYYAVAVLLTNAHTCLFGSITGEYFDMSAPSLEAY 667
            FRG +LTVAQK +N+ +SKVRVSVEW FGKI   F ++DFK+N KI LQ +AKYY V  LL N HTCL+GS T  YFD+  PSLE Y
Sbjct:  173 FRGVDLTVAQKEFNKRMSKVRVSVEWGFGKIAQYFAFLDFKKNQKILLQPIAKYYLVGSLLINCHTCLYGSQTSSYFDVQPPSLETY 259
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BLAST of mRNA_P-littoralis_Contig150.93.1 vs. uniprot
Match: UPI000C039C62 (uncharacterized protein LOC111324059 n=1 Tax=Stylophora pistillata TaxID=50429 RepID=UPI000C039C62)

HSP 1 Score: 117 bits (293), Expect = 2.640e-28
Identity = 54/87 (62.07%), Postives = 67/87 (77.01%), Query Frame = 2 
Query:  407 FRGANLTVAQKTYNRELSKVRVSVEWQFGKIVALFPYVDFKQNLKIKLQAVAKYYAVAVLLTNAHTCLFGSITGEYFDMSAPSLEAY 667
            FRGA LT  Q+ +N ++SKVR SVEW FGKI+  F Y+DFK+NLK+ LQ+VAKYY V VLLTN HTCL+GS T  +F++  PSLE Y
Sbjct:  199 FRGARLTADQQEFNSQMSKVRCSVEWGFGKIIQNFAYLDFKKNLKVLLQSVAKYYVVGVLLTNCHTCLYGSPTSTFFNLDPPSLETY 285
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BLAST of mRNA_P-littoralis_Contig150.93.1 vs. uniprot
Match: A0A6P8IAB2_ACTTE (uncharacterized protein LOC116297948 n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8IAB2_ACTTE)

HSP 1 Score: 110 bits (276), Expect = 2.280e-27
Identity = 49/87 (56.32%), Postives = 65/87 (74.71%), Query Frame = 2 
Query:  407 FRGANLTVAQKTYNRELSKVRVSVEWQFGKIVALFPYVDFKQNLKIKLQAVAKYYAVAVLLTNAHTCLFGSITGEYFDMSAPSLEAY 667
            FRGA LT  ++ +N  +S+VR  VEW FGKI+  F ++DFK+NLK+ +Q VAKYY VA +LTN HTCL+GS+TG YF++  P LE Y
Sbjct:   53 FRGACLTNDEQEFNTRMSQVRECVEWGFGKIIQXFAFLDFKKNLKVLMQPVAKYYLVATILTNCHTCLYGSLTGSYFELDPPELETY 139
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BLAST of mRNA_P-littoralis_Contig150.93.1 vs. uniprot
Match: A0A7D9J6I9_PARCT (DDE Tnp4 domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9J6I9_PARCT)

HSP 1 Score: 110 bits (276), Expect = 2.340e-27
Identity = 54/87 (62.07%), Postives = 64/87 (73.56%), Query Frame = 2 
Query:  407 FRGANLTVAQKTYNRELSKVRVSVEWQFGKIVALFPYVDFKQNLKIKLQAVAKYYAVAVLLTNAHTCLFGSITGEYFDMSAPSLEAY 667
            FR A LT A+K +NR +SKVRVSVE  FGKI     ++DFK+N KI LQ VAKYY VA LL N HTCL+GS TG+YF++  PSLE Y
Sbjct:   53 FREAGLTAAEKAFNRAMSKVRVSVELGFGKIAQYLAFLDFKKNFKILLQPVAKYYIVASLLINCHTCLYGSATGKYFNLDPPSLERY 139
[Close]
BLAST of mRNA_P-littoralis_Contig150.93.1 vs. uniprot
Match: UPI00077A99CC (uncharacterized protein LOC107345875 n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077A99CC)

HSP 1 Score: 113 bits (283), Expect = 4.670e-27
Identity = 50/87 (57.47%), Postives = 66/87 (75.86%), Query Frame = 2 
Query:  407 FRGANLTVAQKTYNRELSKVRVSVEWQFGKIVALFPYVDFKQNLKIKLQAVAKYYAVAVLLTNAHTCLFGSITGEYFDMSAPSLEAY 667
            FRG NLT+ ++ +NR++SKVRV+VEW FGKI   F Y+DFK+NLK+ LQ V KYY VA +L N HTCL+GS T  +F++  P+LE Y
Sbjct:  175 FRGVNLTIQEQEFNRKMSKVRVNVEWGFGKICQNFAYLDFKKNLKVLLQPVGKYYLVATILINCHTCLYGSQTSSFFELEPPTLETY 261
[Close]
BLAST of mRNA_P-littoralis_Contig150.93.1 vs. uniprot
Match: A0A8B6E498_MYTGA (DDE Tnp4 domain-containing protein n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6E498_MYTGA)

HSP 1 Score: 109 bits (272), Expect = 2.490e-26
Identity = 49/87 (56.32%), Postives = 67/87 (77.01%), Query Frame = 2 
Query:  407 FRGANLTVAQKTYNRELSKVRVSVEWQFGKIVALFPYVDFKQNLKIKLQAVAKYYAVAVLLTNAHTCLFGSITGEYFDMSAPSLEAY 667
            FRG  ++  Q  +N+ +S VR+ VEW FGK+++LF ++D+K+NLK+ LQ V KYY VAVLLTN HTCL+GS TG +FD+S P+LE Y
Sbjct:   90 FRGGVISRNQMIFNKRMSAVRICVEWAFGKVLSLFAFLDYKKNLKLYLQPVGKYYKVAVLLTNCHTCLYGSETGIFFDVSPPTLEDY 176
[Close]
BLAST of mRNA_P-littoralis_Contig150.93.1 vs. uniprot
Match: UPI000A2A66BF (protein ALP1-like isoform X1 n=2 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A66BF)

HSP 1 Score: 112 bits (280), Expect = 1.270e-25
Identity = 52/87 (59.77%), Postives = 65/87 (74.71%), Query Frame = 2 
Query:  407 FRGANLTVAQKTYNRELSKVRVSVEWQFGKIVALFPYVDFKQNLKIKLQAVAKYYAVAVLLTNAHTCLFGSITGEYFDMSAPSLEAY 667
            FRGA LT  Q+ +NR +SK+RV+VEW FGKI   F ++DFK+N+K+ LQ V KYY VA LLTN HTCL+ S TG YF++  PSLE Y
Sbjct:  308 FRGAQLTHDQQEFNRRMSKLRVAVEWGFGKICQQFAFLDFKKNMKVLLQPVGKYYVVAALLTNCHTCLYNSQTGRYFELYPPSLEDY 394
[Close]
BLAST of mRNA_P-littoralis_Contig150.93.1 vs. uniprot
Match: UPI00106A10C3 (uncharacterized protein LOC114539446 n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106A10C3)

HSP 1 Score: 111 bits (277), Expect = 1.510e-25
Identity = 52/87 (59.77%), Postives = 63/87 (72.41%), Query Frame = 2 
Query:  407 FRGANLTVAQKTYNRELSKVRVSVEWQFGKIVALFPYVDFKQNLKIKLQAVAKYYAVAVLLTNAHTCLFGSITGEYFDMSAPSLEAY 667
            FRGA L+  Q+ +NR +S VR SVEW FGKIV  F ++DF +NLK+ LQ V K Y VAVLLTN HTCL+GS TG +F +  P LEAY
Sbjct:  252 FRGAQLSPTQQQFNRHMSSVRTSVEWGFGKIVQYFAFMDFSKNLKVLLQPVGKLYCVAVLLTNCHTCLYGSQTGHFFGVDPPQLEAY 338
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig150.93.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7D9E049_PARCT2.040e-2960.92DDE Tnp4 domain-containing protein (Fragment) n=1 ... [more]
UPI001CF3474D5.370e-2959.77uncharacterized protein LOC114950185 isoform X3 n=... [more]
A0A6S7L092_PARCT1.540e-2863.22DDE Tnp4 domain-containing protein n=1 Tax=Paramur... [more]
UPI000C039C622.640e-2862.07uncharacterized protein LOC111324059 n=1 Tax=Stylo... [more]
A0A6P8IAB2_ACTTE2.280e-2756.32uncharacterized protein LOC116297948 n=1 Tax=Actin... [more]
A0A7D9J6I9_PARCT2.340e-2762.07DDE Tnp4 domain-containing protein n=1 Tax=Paramur... [more]
UPI00077A99CC4.670e-2757.47uncharacterized protein LOC107345875 n=1 Tax=Acrop... [more]
A0A8B6E498_MYTGA2.490e-2656.32DDE Tnp4 domain-containing protein n=1 Tax=Mytilus... [more]
UPI000A2A66BF1.270e-2559.77protein ALP1-like isoform X1 n=2 Tax=Exaiptasia di... [more]
UPI00106A10C31.510e-2559.77uncharacterized protein LOC114539446 n=1 Tax=Dendr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig150contigP-littoralis_Contig150:483827..484742 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog157072.XP_008869481.1
PFAMsDDE_Tnp_4
Model size667
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue4.34e-16
EggNOG OGsKOG4585@1|root,KOG4585@2759|Eukaryota
Descriptionnuclease activity
Cds size369
COG categoryB
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789718.91325-UTR-P-littoralis_Contig150:483826..4838821680789718.91325-UTR-P-littoralis_Contig150:483826..483882Pylaiella littoralis U1_48UTRP-littoralis_Contig150 483827..483882 +
1680789718.952287-UTR-P-littoralis_Contig150:484500..4847421680789718.952287-UTR-P-littoralis_Contig150:484500..484742Pylaiella littoralis U1_48UTRP-littoralis_Contig150 484501..484742 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789718.9271302-CDS-P-littoralis_Contig150:483882..4839071680789718.9271302-CDS-P-littoralis_Contig150:483882..483907Pylaiella littoralis U1_48CDSP-littoralis_Contig150 483883..483907 +
1680789718.9373348-CDS-P-littoralis_Contig150:484156..4845001680789718.9373348-CDS-P-littoralis_Contig150:484156..484500Pylaiella littoralis U1_48CDSP-littoralis_Contig150 484157..484500 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig150.93.1prot_P-littoralis_Contig150.93.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig150 483883..484500 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig150.93.1

>prot_P-littoralis_Contig150.93.1 ID=prot_P-littoralis_Contig150.93.1|Name=mRNA_P-littoralis_Contig150.93.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=123bp
MCKKIEAKGGMACEGGNFIGFIDGTLRRNCRPGGDPALQEQMYDGHHCAH
GLAWQSVVFADGMLEIWGPEMGRRNDALLLSRSGLNGRLAAVQAGNPVQF
KVYGDAAYPVSSHVDRVSAART*
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mRNA from alignment at P-littoralis_Contig150:483827..484742+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig150.93.1 ID=mRNA_P-littoralis_Contig150.93.1|Name=mRNA_P-littoralis_Contig150.93.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=916bp|location=Sequence derived from alignment at P-littoralis_Contig150:483827..484742+ (Pylaiella littoralis U1_48)
ACCACCTGCACAGGGTGACGCACAATCTTGAGTTCTTCTTTCCCCGCTTT
CCAACGATGTGCAAGAAGATCGAGGCGAAAGGTGAGCTGTGTGTGCAAAG
TGCTTGGCCAGCACTATGTAGCATGGCTGAAGTTTTTTTTTGTAGGGCTG
TGGCCTTTCGTACGACGCGGTACGACGGCGATAATGCCGCGGAGACCACT
CTGTGGAGTTGGCACGGGTGTAAAAATACCAAAATACGATCTTTTACTCG
CGAAACCTTCCGCTTGATTGGCCGATAACCTGGCTTTGTTTGTACCCTCG
ATTCCCTCCACCTTGTTGTTGGTGCCCAAGGTGGGATGGCGTGCGAGGGC
GGCAACTTCATCGGGTTCATCGACGGTACGCTCAGGAGGAACTGCCGCCC
AGGGGGAGATCCCGCGCTGCAGGAGCAAATGTACGACGGCCACCACTGCG
CTCATGGCCTCGCTTGGCAGTCTGTTGTGTTTGCAGATGGGATGCTGGAG
ATTTGGGGACCAGAAATGGGGCGACGGAACGATGCCCTGTTGCTAAGCAG
AAGCGGCTTGAACGGTAGACTCGCGGCAGTGCAGGCAGGGAATCCCGTCC
AGTTCAAGGTGTACGGAGACGCGGCGTATCCCGTCAGCTCCCACGTCGAC
CGGGTTTCCGCGGCGCGAACCTGACGGTCGCGCAGAAGACCTACAACAGG
GAGCTCTCGAAGGTCAGGGTCTCCGTCGAATGGCAGTTCGGGAAGATCGT
TGCACTTTTTCCGTACGTCGACTTCAAGCAGAACCTGAAGATAAAGCTAC
AGGCGGTCGCGAAGTACTACGCCGTAGCGGTGCTGCTCACTAACGCGCAC
ACTTGCCTCTTCGGGAGCATCACGGGCGAATACTTCGACATGTCCGCTCC
GTCACTGGAGGCGTAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig150:483827..484742+

>mRNA_P-littoralis_Contig150.93.1 ID=mRNA_P-littoralis_Contig150.93.1|Name=mRNA_P-littoralis_Contig150.93.1|organism=Pylaiella littoralis U1_48|type=CDS|length=369bp|location=Sequence derived from alignment at P-littoralis_Contig150:483827..484742+ (Pylaiella littoralis U1_48)
ATGTGCAAGAAGATCGAGGCGAAAGGTGGGATGGCGTGCGAGGGCGGCAA
CTTCATCGGGTTCATCGACGGTACGCTCAGGAGGAACTGCCGCCCAGGGG
GAGATCCCGCGCTGCAGGAGCAAATGTACGACGGCCACCACTGCGCTCAT
GGCCTCGCTTGGCAGTCTGTTGTGTTTGCAGATGGGATGCTGGAGATTTG
GGGACCAGAAATGGGGCGACGGAACGATGCCCTGTTGCTAAGCAGAAGCG
GCTTGAACGGTAGACTCGCGGCAGTGCAGGCAGGGAATCCCGTCCAGTTC
AAGGTGTACGGAGACGCGGCGTATCCCGTCAGCTCCCACGTCGACCGGGT
TTCCGCGGCGCGAACCTGA
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