mRNA_P-littoralis_Contig150.82.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig150.82.1
Unique NamemRNA_P-littoralis_Contig150.82.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig150.82.1 vs. uniprot
Match: A0A6H5JRH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRH8_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 7.560e-23
Identity = 54/107 (50.47%), Postives = 72/107 (67.29%), Query Frame = 1 
Query:    4 AQRNIEGDDGLSAGDRWGDACVRGLTAGEAGVSGVLGLVGGRDVLWSKNCAAVASGNARTAGGAGPRCAKCKEFWRVTVKPKIKNFLSPAHKHTTDKDLSTGQKVSQ 324
            A+R + GDDGL+  +RW  A VRG+T G A VSGVLGLV G DVLWSK+C  +AS N    G   PRC++C++FWR  VK ++++F   A K+T    LST QK ++
Sbjct:   60 AERTLGGDDGLAPPERWEHARVRGVTTGRACVSGVLGLVEGSDVLWSKDCCGMASVNRGAGGSMVPRCSRCQKFWRDNVKGRMESFHGDAAKNTAIDHLSTAQKKTR 166
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BLAST of mRNA_P-littoralis_Contig150.82.1 vs. uniprot
Match: A0A6H5KCN5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCN5_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 6.140e-10
Identity = 44/100 (44.00%), Postives = 57/100 (57.00%), Query Frame = 1 
Query:   46 DRWGDACVRGLTAGEAG-VSGVLGLVGGRDVLWSKNCAAVASGNARTAGGAGPRCAKCKEFWRVTVKPKIKNFLSPAHKHTTDKDLSTGQKVSQASTNQR 342
            DRW  A VRG+ AG  G VSGV+GLVG  DVLWS+ C   A+ +    G   PRC  CK+F+R  + P+  +    A KHT  K      +VS+ ST Q+
Sbjct:   50 DRWQHADVRGVLAGPNGHVSGVMGLVGREDVLWSRKCTGFATPSYGRTGV--PRCTHCKDFYRRGMTPRTAH----AAKHTPAKKT----RVSEMSTAQK 139
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig150.82.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JRH8_9PHAE7.560e-2350.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCN5_9PHAE6.140e-1044.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig150contigP-littoralis_Contig150:470654..471241 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size589
Hectar predicted targeting categoryother localisation
Exons1
Cds size393
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789718.8605099-CDS-P-littoralis_Contig150:470653..4710461680789718.8605099-CDS-P-littoralis_Contig150:470653..471046Pylaiella littoralis U1_48CDSP-littoralis_Contig150 470654..471046 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789718.8767092-UTR-P-littoralis_Contig150:471046..4712411680789718.8767092-UTR-P-littoralis_Contig150:471046..471241Pylaiella littoralis U1_48UTRP-littoralis_Contig150 471047..471241 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig150.82.1prot_P-littoralis_Contig150.82.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig150 470654..471046 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig150.82.1

>prot_P-littoralis_Contig150.82.1 ID=prot_P-littoralis_Contig150.82.1|Name=mRNA_P-littoralis_Contig150.82.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=131bp
QAQRNIEGDDGLSAGDRWGDACVRGLTAGEAGVSGVLGLVGGRDVLWSKN
CAAVASGNARTAGGAGPRCAKCKEFWRVTVKPKIKNFLSPAHKHTTDKDL
STGQKVSQASTNQRGHGMEWLVENETVGNV*
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mRNA from alignment at P-littoralis_Contig150:470654..471241+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig150.82.1 ID=mRNA_P-littoralis_Contig150.82.1|Name=mRNA_P-littoralis_Contig150.82.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=588bp|location=Sequence derived from alignment at P-littoralis_Contig150:470654..471241+ (Pylaiella littoralis U1_48)
CAGGCTCAGCGCAATATCGAGGGCGATGACGGGTTATCGGCGGGCGATCG
CTGGGGTGACGCTTGCGTCAGGGGTTTGACGGCGGGGGaGGCCGGTGTTT
CTGGGGTCCTCGGCTTGGTCGGGGGGCGAGATGTGTTGTGGTCGAAGAAC
TGTGCTGCTGTGGCGAGTGGAAACGCTCGCACTGCTGGGGGAGCGGGGCC
GAGGTGTGCGAAGTGCAAGGAGTTCTGGCGTGTGACCGTCAAGCCAAAGA
TCAAAAACTTCCTCTCTCCTGCGCACAAGCACACCACGGACAAAGACCTC
AGCACAGGTCAGAAGGTAAGTCAGGCTTCAACAAACCAGCGTGGGCATGG
CATGGAGTGGTTGGTGGAGAATGAGACCGTGGGCAATGTGTGATACTCTT
GTTGGGCAGGGGGAGGGTGAGGCCGTGGGCAATGTTTGCCGCGCTTGTTC
GGGCAGGTAGGGGGGAGGCCGTGGGCAATGTTTGATGCGTTGTTCACCGT
TCACCATTCTTATGTGCTCCCTCGCGATATCGCTTGCCGGTAGTTGGACA
AGCTCTCGAGGACAGCGGCAGACTTGAAGGCGGCGAAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig150:470654..471241+

>mRNA_P-littoralis_Contig150.82.1 ID=mRNA_P-littoralis_Contig150.82.1|Name=mRNA_P-littoralis_Contig150.82.1|organism=Pylaiella littoralis U1_48|type=CDS|length=393bp|location=Sequence derived from alignment at P-littoralis_Contig150:470654..471241+ (Pylaiella littoralis U1_48)
CAGGCTCAGCGCAATATCGAGGGCGATGACGGGTTATCGGCGGGCGATCG
CTGGGGTGACGCTTGCGTCAGGGGTTTGACGGCGGGGGaGGCCGGTGTTT
CTGGGGTCCTCGGCTTGGTCGGGGGGCGAGATGTGTTGTGGTCGAAGAAC
TGTGCTGCTGTGGCGAGTGGAAACGCTCGCACTGCTGGGGGAGCGGGGCC
GAGGTGTGCGAAGTGCAAGGAGTTCTGGCGTGTGACCGTCAAGCCAAAGA
TCAAAAACTTCCTCTCTCCTGCGCACAAGCACACCACGGACAAAGACCTC
AGCACAGGTCAGAAGGTAAGTCAGGCTTCAACAAACCAGCGTGGGCATGG
CATGGAGTGGTTGGTGGAGAATGAGACCGTGGGCAATGTGTGA
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