mRNA_P-littoralis_Contig1017.20.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1017.20.1
Unique NamemRNA_P-littoralis_Contig1017.20.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1017.20.1 vs. uniprot
Match: A0A6H5J7P3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7P3_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 1.740e-12
Identity = 34/56 (60.71%), Postives = 41/56 (73.21%), Query Frame = 2 
Query:  293 KEEGGKYDNLSYVLARTIRSNLHQEAAKLIGCTGMGNQCKRGQCFARAMQVFPGKG 460
            KE   + DN+SYVLART+R  L   AA+ IG +G GNQC+RG CFARAM +F GKG
Sbjct:  153 KERDSQGDNVSYVLARTVRRILQYLAAQEIGASGQGNQCRRGDCFARAMGMFFGKG 208
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BLAST of mRNA_P-littoralis_Contig1017.20.1 vs. uniprot
Match: D8LNQ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNQ5_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 7.360e-7
Identity = 27/52 (51.92%), Postives = 33/52 (63.46%), Query Frame = 2 
Query:  293 KEEGGKYDNLSYVLARTIRSNLHQEAAKLIGCTGMGNQCKRGQCFARAMQVF 448
            K    + DN+ YVLART+RSNL   AA+ IG TG GNQC+RG   +R   V 
Sbjct:  120 KARDSEGDNVPYVLARTVRSNLQYLAAQEIGATGQGNQCRRGMFCSRYGHVL 171
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1017.20.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J7P3_9PHAE1.740e-1260.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNQ5_ECTSI7.360e-751.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1017contigP-littoralis_Contig1017:62589..63693 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size460
Hectar predicted targeting categoryother localisation
Exons2
Cds size246
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789355.856656-UTR-P-littoralis_Contig1017:62588..626681680789355.856656-UTR-P-littoralis_Contig1017:62588..62668Pylaiella littoralis U1_48UTRP-littoralis_Contig1017 62589..62668 -
1680789355.8840134-UTR-P-littoralis_Contig1017:63559..636931680789355.8840134-UTR-P-littoralis_Contig1017:63559..63693Pylaiella littoralis U1_48UTRP-littoralis_Contig1017 63560..63693 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789355.8656368-CDS-P-littoralis_Contig1017:62668..627731680789355.8656368-CDS-P-littoralis_Contig1017:62668..62773Pylaiella littoralis U1_48CDSP-littoralis_Contig1017 62669..62773 -
1680789355.8745847-CDS-P-littoralis_Contig1017:63418..635591680789355.8745847-CDS-P-littoralis_Contig1017:63418..63559Pylaiella littoralis U1_48CDSP-littoralis_Contig1017 63419..63559 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1017.20.1prot_P-littoralis_Contig1017.20.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1017 62669..63559 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1017.20.1

>prot_P-littoralis_Contig1017.20.1 ID=prot_P-littoralis_Contig1017.20.1|Name=mRNA_P-littoralis_Contig1017.20.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=82bp
MRGCRRVRMRGASPEVGQATPQPDDNLRQSTGLPRVSTTTTTTVDNQGVL
DRQKKREENTTTCRMSLLARSAAICTRRRRN*
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mRNA from alignment at P-littoralis_Contig1017:62589..63693-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1017.20.1 ID=mRNA_P-littoralis_Contig1017.20.1|Name=mRNA_P-littoralis_Contig1017.20.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1105bp|location=Sequence derived from alignment at P-littoralis_Contig1017:62589..63693- (Pylaiella littoralis U1_48)
GACGAGCTGGTGACGCTTCTCGGCACCCCTCCTTCGACTGACTACAGCAG
GACTCCAAAGCTTTGGCGGCCGCGATGTTGGAGTAGGCAACAAACGACCC
CCTCCCGCATCCGCAACTGACTAGAACAGCAAGTATGCGAGGCTGCAGGA
GAGTGCGAATGCGAGGTGCCTCTCCCGAGGTGGGACAAGCAACACCCCAA
CCGGACGACAACTTGCGGCAATCAACAGGGCTTCCTCGTGTCTCAACTAC
TACTACTACAACAGTAGACAACCAGGTGTGTGCGCATTACTATGTTTGTG
GAAGAGAGACCTCTTGCGCCAGCGGTATGATATGACATGTTCGGAATGAA
ACATTCCAACCCAAACAACGGCAACCGTAGGCGACGGCAGTGGTACACTT
ACGATATCACAAGAGACAACACGAGCTGAAGACAACAGCAGCATCGGTAT
TTGAACTAGGCTCTCTGCCTTTCACGAGTCATCCTGTTATCATACGTACC
CGCTTCATAGATAGTTGAAGAAAAACTGCTCACCAAAAGCCACATGTGTC
ACCACACCAAATATGCCTGCTATACAGGGGTTGCTGGACACATAAACTGC
ACGAACAGCGGACGATCTGTAGTAGTATCGAGCAGCATGTTTGATGAGGT
TGTCGCCGATGCTCGTTGGTAGTCTAGTATTTAAACATGATGCCATCAAC
GAAGTTATCGAAATTGACGCTGACATAAAATCACACAAATATAGCAGTTA
GTAGCACTCGAAAACATCGCTCGGGTGTGTTTGGGGTCTCGTAGTTCCAA
GAGGCTGTTGGAGTTTATTTTATATCTCGATGTTTCTTCGGCTACTGAAC
ATGCTCAGTATGCTCAGTGAATAAAACACACCCCCCCACCCTCGCGTCAT
CGAAACGCATGACCTGACAGGGCGTGCTGGATCGCCAAAAGAAGAGGGAG
GAAAATACGACAACCTGTCGTATGTCCTTGCTCGCACGATCCGCAGCAAT
TTGCACCAGGAGGCGGCGAAATTGATCGGGTGTACGGGCATGGGTAACCA
GTGCAAGCGTGGGCAGTGCTTTGCACGAGCGATGCAGGTGTTCCCTGGAA
AAGGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1017:62589..63693-

>mRNA_P-littoralis_Contig1017.20.1 ID=mRNA_P-littoralis_Contig1017.20.1|Name=mRNA_P-littoralis_Contig1017.20.1|organism=Pylaiella littoralis U1_48|type=CDS|length=246bp|location=Sequence derived from alignment at P-littoralis_Contig1017:62589..63693- (Pylaiella littoralis U1_48)
ATGCGAGGCTGCAGGAGAGTGCGAATGCGAGGTGCCTCTCCCGAGGTGGG
ACAAGCAACACCCCAACCGGACGACAACTTGCGGCAATCAACAGGGCTTC
CTCGTGTCTCAACTACTACTACTACAACAGTAGACAACCAGGGCGTGCTG
GATCGCCAAAAGAAGAGGGAGGAAAATACGACAACCTGTCGTATGTCCTT
GCTCGCACGATCCGCAGCAATTTGCACCAGGAGGCGGCGAAATTGA
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