mRNA_P-littoralis_Contig150.35.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig150.35.1
Unique NamemRNA_P-littoralis_Contig150.35.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig150.35.1 vs. uniprot
Match: A0A6H5KZC8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZC8_9PHAE)

HSP 1 Score: 197 bits (502), Expect = 2.690e-62
Identity = 95/112 (84.82%), Postives = 103/112 (91.96%), Query Frame = 1 
Query:    1 SSTEAEYVALAEGMKEAIFLRYLWNFIFPDLDVGRTLVHEDNVGAVYLASNPATTPNSKHIDIKHHFIRERVARGEFRVVHVRSALQRADFLTNPLPKDAFCAHRDFVMNIR 336
            SSTEAEYVA+++GMKEAIFLRYLW FIFP  DVG T V EDNVGA++LASNPATTPNSKHIDI+HHFIRERVARGEF+VVHVRS LQRADFLT PLPK+ FCAHRDFVMNIR
Sbjct:   66 SSTEAEYVAMSDGMKEAIFLRYLWKFIFPGRDVGCTPVWEDNVGAIHLASNPATTPNSKHIDIRHHFIRERVARGEFKVVHVRSDLQRADFLTKPLPKETFCAHRDFVMNIR 177
[Close]
BLAST of mRNA_P-littoralis_Contig150.35.1 vs. uniprot
Match: A0A6H5L610_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L610_9PHAE)

HSP 1 Score: 196 bits (497), Expect = 3.490e-62
Identity = 94/112 (83.93%), Postives = 102/112 (91.07%), Query Frame = 1 
Query:    1 SSTEAEYVALAEGMKEAIFLRYLWNFIFPDLDVGRTLVHEDNVGAVYLASNPATTPNSKHIDIKHHFIRERVARGEFRVVHVRSALQRADFLTNPLPKDAFCAHRDFVMNIR 336
            SSTEAEYVA+++GMKEAIFLRYLW  IFP  DVG T V EDNVGA++LASNPATTPNSKHIDI+HHFIRERVARGEF+VVHVRS LQRADFLT PLPK+ FCAHRDFVMNIR
Sbjct:   20 SSTEAEYVAMSDGMKEAIFLRYLWKIIFPGCDVGCTPVWEDNVGAIHLASNPATTPNSKHIDIRHHFIRERVARGEFKVVHVRSDLQRADFLTKPLPKETFCAHRDFVMNIR 131
[Close]
BLAST of mRNA_P-littoralis_Contig150.35.1 vs. uniprot
Match: A0A6H5KHN8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHN8_9PHAE)

HSP 1 Score: 194 bits (493), Expect = 5.580e-58
Identity = 93/112 (83.04%), Postives = 102/112 (91.07%), Query Frame = 1 
Query:    1 SSTEAEYVALAEGMKEAIFLRYLWNFIFPDLDVGRTLVHEDNVGAVYLASNPATTPNSKHIDIKHHFIRERVARGEFRVVHVRSALQRADFLTNPLPKDAFCAHRDFVMNIR 336
            SSTEAEYVA+++GMKEAIFLRYLW  I+P  DVG T V EDNVGA++LASNPATTPNSKHIDI+HHFIRERVARGEF+VVHVRS LQRADFLT PLPK+ FCAHRDFVMNIR
Sbjct:  304 SSTEAEYVAMSDGMKEAIFLRYLWKLIYPGRDVGCTPVWEDNVGAIHLASNPATTPNSKHIDIRHHFIRERVARGEFKVVHVRSDLQRADFLTKPLPKETFCAHRDFVMNIR 415
[Close]
BLAST of mRNA_P-littoralis_Contig150.35.1 vs. uniprot
Match: A0A6H5JWG1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWG1_9PHAE)

HSP 1 Score: 197 bits (502), Expect = 7.510e-58
Identity = 95/112 (84.82%), Postives = 103/112 (91.96%), Query Frame = 1 
Query:    1 SSTEAEYVALAEGMKEAIFLRYLWNFIFPDLDVGRTLVHEDNVGAVYLASNPATTPNSKHIDIKHHFIRERVARGEFRVVHVRSALQRADFLTNPLPKDAFCAHRDFVMNIR 336
            SSTEAEYVA+++GMKEAIFLRYLW FIFP  DVG T V EDNVGA++LASNPATTPNSKHIDI+HHFIRERVARGEF+VVHVRS LQRADFLT PLPK+ FCAHRDFVMNIR
Sbjct:  465 SSTEAEYVAMSDGMKEAIFLRYLWKFIFPGRDVGCTPVWEDNVGAIHLASNPATTPNSKHIDIRHHFIRERVARGEFKVVHVRSDLQRADFLTKPLPKETFCAHRDFVMNIR 576
[Close]
BLAST of mRNA_P-littoralis_Contig150.35.1 vs. uniprot
Match: A0A6H5KGK7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGK7_9PHAE)

HSP 1 Score: 197 bits (502), Expect = 1.480e-56
Identity = 95/112 (84.82%), Postives = 103/112 (91.96%), Query Frame = 1 
Query:    1 SSTEAEYVALAEGMKEAIFLRYLWNFIFPDLDVGRTLVHEDNVGAVYLASNPATTPNSKHIDIKHHFIRERVARGEFRVVHVRSALQRADFLTNPLPKDAFCAHRDFVMNIR 336
            SSTEAEYVA+++GMKEAIFLRYLW FIFP  DVG T V EDNVGA++LASNPATTPNSKHIDI+HHFIRERVARGEF+VVHVRS LQRADFLT PLPK+ FCAHRDFVMNIR
Sbjct:  689 SSTEAEYVAMSDGMKEAIFLRYLWKFIFPGRDVGCTPVWEDNVGAIHLASNPATTPNSKHIDIRHHFIRERVARGEFKVVHVRSDLQRADFLTKPLPKETFCAHRDFVMNIR 800
[Close]
BLAST of mRNA_P-littoralis_Contig150.35.1 vs. uniprot
Match: A0A6H5KAC2_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAC2_9PHAE)

HSP 1 Score: 197 bits (502), Expect = 6.540e-56
Identity = 95/112 (84.82%), Postives = 103/112 (91.96%), Query Frame = 1 
Query:    1 SSTEAEYVALAEGMKEAIFLRYLWNFIFPDLDVGRTLVHEDNVGAVYLASNPATTPNSKHIDIKHHFIRERVARGEFRVVHVRSALQRADFLTNPLPKDAFCAHRDFVMNIR 336
            SSTEAEYVA+++GMKEAIFLRYLW FIFP  DVG T V EDNVGA++LASNPATTPNSKHIDI+HHFIRERVARGEF+VVHVRS LQRADFLT PLPK+ FCAHRDFVMNIR
Sbjct: 1765 SSTEAEYVAMSDGMKEAIFLRYLWKFIFPGRDVGCTPVWEDNVGAIHLASNPATTPNSKHIDIRHHFIRERVARGEFKVVHVRSDLQRADFLTKPLPKETFCAHRDFVMNIR 1876
[Close]
BLAST of mRNA_P-littoralis_Contig150.35.1 vs. uniprot
Match: A0A6H5K5L3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5L3_9PHAE)

HSP 1 Score: 191 bits (486), Expect = 1.330e-55
Identity = 93/112 (83.04%), Postives = 101/112 (90.18%), Query Frame = 1 
Query:    1 SSTEAEYVALAEGMKEAIFLRYLWNFIFPDLDVGRTLVHEDNVGAVYLASNPATTPNSKHIDIKHHFIRERVARGEFRVVHVRSALQRADFLTNPLPKDAFCAHRDFVMNIR 336
            SSTEAEYVA+++GM EAIFLRYLW  IF  LDVG T V EDNVGA++LASNPATTPNSKHIDI+HHFIRERVARGEF+VVHVRS LQRADFLT PLPK+ FCAHRDFVMNIR
Sbjct:  452 SSTEAEYVAMSDGMTEAIFLRYLWKIIFSVLDVGCTPVWEDNVGAIHLASNPATTPNSKHIDIRHHFIRERVARGEFKVVHVRSDLQRADFLTKPLPKETFCAHRDFVMNIR 563
[Close]
BLAST of mRNA_P-littoralis_Contig150.35.1 vs. uniprot
Match: A0A6H5JMP2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMP2_9PHAE)

HSP 1 Score: 192 bits (487), Expect = 6.280e-54
Identity = 93/112 (83.04%), Postives = 101/112 (90.18%), Query Frame = 1 
Query:    1 SSTEAEYVALAEGMKEAIFLRYLWNFIFPDLDVGRTLVHEDNVGAVYLASNPATTPNSKHIDIKHHFIRERVARGEFRVVHVRSALQRADFLTNPLPKDAFCAHRDFVMNIR 336
            SSTEAEYVA+++GMKEAIFLRYLW FIFP  DVG T V EDNVGA++LASNPATTPNSK IDI+HHFIRERVARG F+VVHVRS LQRADFLT PLPK+ FCAHRDFVMNIR
Sbjct:  993 SSTEAEYVAMSDGMKEAIFLRYLWKFIFPGRDVGCTPVWEDNVGAIHLASNPATTPNSKQIDIRHHFIRERVARGGFKVVHVRSDLQRADFLTKPLPKETFCAHRDFVMNIR 1104
[Close]
BLAST of mRNA_P-littoralis_Contig150.35.1 vs. uniprot
Match: A0A6H5K0K7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0K7_9PHAE)

HSP 1 Score: 189 bits (481), Expect = 9.350e-54
Identity = 91/111 (81.98%), Postives = 101/111 (90.99%), Query Frame = 1 
Query:    1 SSTEAEYVALAEGMKEAIFLRYLWNFIFPDLDVGRTLVHEDNVGAVYLASNPATTPNSKHIDIKHHFIRERVARGEFRVVHVRSALQRADFLTNPLPKDAFCAHRDFVMNI 333
            SSTEAEYVA+++GMKEAIFLRYLW FIFP  DVG T V EDNVGA++LASNPATTPNSKHIDI+HHFIRERVARGEF+VVHVRS LQR DFLT PLPK+ FCA+RDFV+NI
Sbjct:  645 SSTEAEYVAMSDGMKEAIFLRYLWKFIFPGRDVGCTPVWEDNVGAIHLASNPATTPNSKHIDIRHHFIRERVARGEFKVVHVRSDLQRPDFLTKPLPKETFCANRDFVINI 755
[Close]
BLAST of mRNA_P-littoralis_Contig150.35.1 vs. uniprot
Match: A0A6H5L5Q2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5Q2_9PHAE)

HSP 1 Score: 181 bits (459), Expect = 1.210e-53
Identity = 85/111 (76.58%), Postives = 100/111 (90.09%), Query Frame = 1 
Query:    1 SSTEAEYVALAEGMKEAIFLRYLWNFIFPDLDVGRTLVHEDNVGAVYLASNPATTPNSKHIDIKHHFIRERVARGEFRVVHVRSALQRADFLTNPLPKDAFCAHRDFVMNI 333
            SSTEAEY A+A+GMKEAIFLRYLW+FIFPD DVG T++ EDNVGA++LA+NPATTPNSKHID++HHFIRERV RGEF+VV+V S LQ ADFLT PLPK+AF  HR+FVMN+
Sbjct:  235 SSTEAEYAAMADGMKEAIFLRYLWSFIFPDGDVGCTVIKEDNVGALHLANNPATTPNSKHIDVRHHFIRERVDRGEFKVVYVPSHLQHADFLTKPLPKEAFSVHRNFVMNL 345
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig150.35.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KZC8_9PHAE2.690e-6284.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L610_9PHAE3.490e-6283.93Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHN8_9PHAE5.580e-5883.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWG1_9PHAE7.510e-5884.82Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KGK7_9PHAE1.480e-5684.82Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KAC2_9PHAE6.540e-5684.82Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5K5L3_9PHAE1.330e-5583.04Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JMP2_9PHAE6.280e-5483.04Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K0K7_9PHAE9.350e-5481.98Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L5Q2_9PHAE1.210e-5376.58Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig150contigP-littoralis_Contig150:155352..155782 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog5217.XP_007000815.1
PFAMsRVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size431
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.34e-15
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3NUZ7@4751|Fungi,3UY7N@5204|Basidiomycota
DescriptionEncoded by
Cds size300
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789717.6667116-UTR-P-littoralis_Contig150:155351..1554431680789717.6667116-UTR-P-littoralis_Contig150:155351..155443Pylaiella littoralis U1_48UTRP-littoralis_Contig150 155352..155443 -
1680789717.6909645-UTR-P-littoralis_Contig150:155743..1557821680789717.6909645-UTR-P-littoralis_Contig150:155743..155782Pylaiella littoralis U1_48UTRP-littoralis_Contig150 155744..155782 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789717.6813576-CDS-P-littoralis_Contig150:155443..1557431680789717.6813576-CDS-P-littoralis_Contig150:155443..155743Pylaiella littoralis U1_48CDSP-littoralis_Contig150 155444..155743 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig150.35.1prot_P-littoralis_Contig150.35.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig150 155444..155743 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig150.35.1

>prot_P-littoralis_Contig150.35.1 ID=prot_P-littoralis_Contig150.35.1|Name=mRNA_P-littoralis_Contig150.35.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=100bp
MKEAIFLRYLWNFIFPDLDVGRTLVHEDNVGAVYLASNPATTPNSKHIDI
KHHFIRERVARGEFRVVHVRSALQRADFLTNPLPKDAFCAHRDFVMNIR*
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mRNA from alignment at P-littoralis_Contig150:155352..155782-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig150.35.1 ID=mRNA_P-littoralis_Contig150.35.1|Name=mRNA_P-littoralis_Contig150.35.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=431bp|location=Sequence derived from alignment at P-littoralis_Contig150:155352..155782- (Pylaiella littoralis U1_48)
TCGTCGACGGAGGCGGAGTACGTAGCCCTAGCCGAAGGGATGAAGGAGGC
GATTTTCTTGCGGTATCTCTGGAATTTTATCTTTCCGGACCTCGATGTAG
GGCGCACTTTGGTCCACGAGGACAACGTCGGGGCCGTTTACCTGGCAAGC
AATCCGGCCACAACCCCCAACTCAAAGCACATCGACATCAAGCACCATTT
CATTCGCGAACGCGTGGCACGGGGGGAGTTCAGGGTAGTTCACGTACGTT
CTGCGTTGCAGCGTGCTGATTTCTTGACCAATCCACTGCCCAAAGACGCT
TTTTGCGCGCACCGTGACTTTGTGATGAACATTCGGTAACTTGTGCGTGT
TGCGTTGTTCGCCCTGAGTTTCTAGCCGTTCTGCGGCTATCGTCTTTGTT
TTTGGCACCGCAGCATGTATGTTGTTTTTCT
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Coding sequence (CDS) from alignment at P-littoralis_Contig150:155352..155782-

>mRNA_P-littoralis_Contig150.35.1 ID=mRNA_P-littoralis_Contig150.35.1|Name=mRNA_P-littoralis_Contig150.35.1|organism=Pylaiella littoralis U1_48|type=CDS|length=300bp|location=Sequence derived from alignment at P-littoralis_Contig150:155352..155782- (Pylaiella littoralis U1_48)
ATGAAGGAGGCGATTTTCTTGCGGTATCTCTGGAATTTTATCTTTCCGGA
CCTCGATGTAGGGCGCACTTTGGTCCACGAGGACAACGTCGGGGCCGTTT
ACCTGGCAAGCAATCCGGCCACAACCCCCAACTCAAAGCACATCGACATC
AAGCACCATTTCATTCGCGAACGCGTGGCACGGGGGGAGTTCAGGGTAGT
TCACGTACGTTCTGCGTTGCAGCGTGCTGATTTCTTGACCAATCCACTGC
CCAAAGACGCTTTTTGCGCGCACCGTGACTTTGTGATGAACATTCGGTAA
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