mRNA_P-littoralis_Contig150.36.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig150.36.1
Unique NamemRNA_P-littoralis_Contig150.36.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig150.36.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig150contigP-littoralis_Contig150:168718..169110 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size393
Hectar predicted targeting categoryother localisation
Exons1
Cds size300
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789716.5568044-UTR-P-littoralis_Contig150:168717..1687921680789716.5568044-UTR-P-littoralis_Contig150:168717..168792Pylaiella littoralis U1_48UTRP-littoralis_Contig150 168718..168792 +
1680789716.575485-UTR-P-littoralis_Contig150:169092..1691101680789716.575485-UTR-P-littoralis_Contig150:169092..169110Pylaiella littoralis U1_48UTRP-littoralis_Contig150 169093..169110 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789716.5668058-CDS-P-littoralis_Contig150:168792..1690921680789716.5668058-CDS-P-littoralis_Contig150:168792..169092Pylaiella littoralis U1_48CDSP-littoralis_Contig150 168793..169092 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig150.36.1prot_P-littoralis_Contig150.36.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig150 168793..169092 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig150.36.1

>prot_P-littoralis_Contig150.36.1 ID=prot_P-littoralis_Contig150.36.1|Name=mRNA_P-littoralis_Contig150.36.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=100bp
MTDVYEQPVQSEVDAGNGSSGEEDDDASSDDGDDGWNSCVLRQQQLLRQR
GGVVESMDPSERGFGGLGGGDGDPNAGTFSQLMHPFDRGKSSHLRRFVW*
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mRNA from alignment at P-littoralis_Contig150:168718..169110+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig150.36.1 ID=mRNA_P-littoralis_Contig150.36.1|Name=mRNA_P-littoralis_Contig150.36.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=393bp|location=Sequence derived from alignment at P-littoralis_Contig150:168718..169110+ (Pylaiella littoralis U1_48)
ACTGACGACGACGGGCGAGAGTACGTTGCGGCCGTCTCGACAGGCCCTCA
GAGTGCGTTACCCCCTGCGGCAGGAATGACAGATGTGTATGAGCAACCAG
TTCAGTCGGAGGTGGATGCAGGGAACGGCAGCAGTGGCGAAGAGGATGAT
GATGCTAGTAGTGATGATGGCGATGACGGTTGGAACAGCTGTGTTTTGCG
GCAGCAGCAGTTACTGCGGCAACGCGGCGGCGTGGTGGAGTCCATGGACC
CATCGGAGAGAGGTTTTGGCGGTTTAGGGGGCGGCGACGGTGACCCCAAT
GCTGGGACGTTTTCGCAGCTCATGCACCCGTTTGATCGGGGCAAGAGTTC
GCATTTGCGGCGGTTTGTATGGTGATGAACTTCATGCTCGGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig150:168718..169110+

>mRNA_P-littoralis_Contig150.36.1 ID=mRNA_P-littoralis_Contig150.36.1|Name=mRNA_P-littoralis_Contig150.36.1|organism=Pylaiella littoralis U1_48|type=CDS|length=300bp|location=Sequence derived from alignment at P-littoralis_Contig150:168718..169110+ (Pylaiella littoralis U1_48)
ATGACAGATGTGTATGAGCAACCAGTTCAGTCGGAGGTGGATGCAGGGAA
CGGCAGCAGTGGCGAAGAGGATGATGATGCTAGTAGTGATGATGGCGATG
ACGGTTGGAACAGCTGTGTTTTGCGGCAGCAGCAGTTACTGCGGCAACGC
GGCGGCGTGGTGGAGTCCATGGACCCATCGGAGAGAGGTTTTGGCGGTTT
AGGGGGCGGCGACGGTGACCCCAATGCTGGGACGTTTTCGCAGCTCATGC
ACCCGTTTGATCGGGGCAAGAGTTCGCATTTGCGGCGGTTTGTATGGTGA
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