mRNA_P-littoralis_Contig150.64.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig150.64.1
Unique NamemRNA_P-littoralis_Contig150.64.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig150.64.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig150contigP-littoralis_Contig150:290304..291800 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size442
Hectar predicted targeting categorysignal anchor
Exons2
Cds size441
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789716.291144-CDS-P-littoralis_Contig150:290303..2905051680789716.291144-CDS-P-littoralis_Contig150:290303..290505Pylaiella littoralis U1_48CDSP-littoralis_Contig150 290304..290505 -
1680789716.3038008-CDS-P-littoralis_Contig150:291561..2918001680789716.3038008-CDS-P-littoralis_Contig150:291561..291800Pylaiella littoralis U1_48CDSP-littoralis_Contig150 291562..291800 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig150.64.1prot_P-littoralis_Contig150.64.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig150 290304..291800 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig150.64.1

>prot_P-littoralis_Contig150.64.1 ID=prot_P-littoralis_Contig150.64.1|Name=mRNA_P-littoralis_Contig150.64.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=147bp
LADRESSYHWLPRRQYRAHAALCCTAVQTAAVVCYTAVLRYYPAVSVRTV
VACLLEHGVSSCCRSVERTTTTMSRKRTCRVLDGITVEFRLSQLNGILQR
TVETMRGDDVIQGKKAMAILQNWCGENCSFEKVFGSVRGMLPATAPG
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mRNA from alignment at P-littoralis_Contig150:290304..291800-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig150.64.1 ID=mRNA_P-littoralis_Contig150.64.1|Name=mRNA_P-littoralis_Contig150.64.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1497bp|location=Sequence derived from alignment at P-littoralis_Contig150:290304..291800- (Pylaiella littoralis U1_48)
TTGGCTGACAGAGAGTCGTCATATCATTGGCTGCCTCGTCGACAGTACCG
AGCGCACGCGGCGCTGTGTTGTACAGCAGTACAGACAGCTGCTGTTGTTT
GTTATACAGCAGTACTGCGGTATTATCCGGCTGTATCAGTACGTACTGTT
GTTGCTTGCTTGTTGGAGCATGGCGTGAGCAGCTGCTGCCGGTCCGTGGA
ACGAACAACAACAACAATGTCGCGCAAGAGGACTTGTAGGTGAGAACACG
TTTTGACAACTGCTGTTCCACCCCGTATACTGGTGTGTATACGCTGGTCC
TCCGCTGCTGTCGTTGCGAGTTGCTGCTGGCTGCTGCTGCTCTATGCCAG
GGTATATGCGATAATACTACTTGATCGAGCTGCAGAATAGTGGTAGTATA
CAACAGCAGCAACGACAGCAGTTTTTTGTACCGCTGCTGAGCTGCTGTAA
TCCGCGTACTGCGTACTTATTCCTATATTAGGCCTTGCGTCACTTGCTCC
CTTGTCTCCGTGTTCTGTGCTGTAAGAAGGACAGGGTTTTTTCCGCACGA
CGGCGGTGGTAATGGTTGTACAGGAGAATGGACTGCCTCTTGCAAGAAAT
ATATGGGATACAATATAGTGCCTGATGTAAACGAAAACCCGAGATTGTCT
GAAATTGTCTGGGTCGTGTACAGATAACAACGCGAGAAATTCTATGCAAG
GTCGTCACCGGCGTCCTGGAAGGCACGGCGTTGTGTGTGCATAAAATCTT
GGTGAAAATGCGTGATAAAGCATGAAAAAAAAAAAATCCTAAACGTCCGT
ATTTTGTTGTTTTTACAACCCACTAATTTCAAGTCAAACGGCAGACTACG
ATTTTCTGTAAATATAGTAAAGTATGACGGCAGGTACAGCTGGGTGACAT
GTAGACCGATCAGAGACCCCCCACACAGCCGGTCAGCGAGAGTTGTTGTG
CCTGTCACAAGATTAGTGCTTAACCATGCAGTGCTTGGATATGCCGAGGC
CGTGTACCCTCTCTGTCAATGAGACGATCGTACGAAGTACGAAGTGCCGG
GGTATGGCACAGCAGCACTCATGTATGACATAATGTACTTCGTATGTTTT
TTGTGCATTGCTGGCACTCTACACTTTGATACATAGGAGAGTAACGTAAA
ATCCAGGTGTCATGATACTGGTCCGAGGTCAACCGAAGTCTGCTTGCCCT
CTCCGTCTCTGTCTCACTGTCTATAACATTCAGGCTCATAGCTCATAATG
ATCAGGAAATGTGCCCTCGCGTGTGATTTGTACTCCTTCTTGTAGGGTTT
TGGATGGAATTACCGTAGAATTCAGGCTGAGCCAGCTCAATGGCATACTG
CAACGTACGGTGGAAACGATGAGAGGGGATGATGTCATACAGGGAAAGAA
GGCGATGGCTATTCTGCAGAATTGGTGCGGCGAGAACTGTTCGTTTGAGA
AGGTCTTCGGCTCTGTCCGTGGGATGCTACCGGCCACCGCACCCGGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig150:290304..291800-

>mRNA_P-littoralis_Contig150.64.1 ID=mRNA_P-littoralis_Contig150.64.1|Name=mRNA_P-littoralis_Contig150.64.1|organism=Pylaiella littoralis U1_48|type=CDS|length=441bp|location=Sequence derived from alignment at P-littoralis_Contig150:290304..291800- (Pylaiella littoralis U1_48)
TTGGCTGACAGAGAGTCGTCATATCATTGGCTGCCTCGTCGACAGTACCG
AGCGCACGCGGCGCTGTGTTGTACAGCAGTACAGACAGCTGCTGTTGTTT
GTTATACAGCAGTACTGCGGTATTATCCGGCTGTATCAGTACGTACTGTT
GTTGCTTGCTTGTTGGAGCATGGCGTGAGCAGCTGCTGCCGGTCCGTGGA
ACGAACAACAACAACAATGTCGCGCAAGAGGACTTGTAGGGTTTTGGATG
GAATTACCGTAGAATTCAGGCTGAGCCAGCTCAATGGCATACTGCAACGT
ACGGTGGAAACGATGAGAGGGGATGATGTCATACAGGGAAAGAAGGCGAT
GGCTATTCTGCAGAATTGGTGCGGCGAGAACTGTTCGTTTGAGAAGGTCT
TCGGCTCTGTCCGTGGGATGCTACCGGCCACCGCACCCGGC
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