mRNA_P-littoralis_Contig150.16.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig150.16.1
Unique NamemRNA_P-littoralis_Contig150.16.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig150.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig150contigP-littoralis_Contig150:54691..55589 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size299
Hectar predicted targeting categoryother localisation
Exons2
Cds size210
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789716.1870348-UTR-P-littoralis_Contig150:54690..547371680789716.1870348-UTR-P-littoralis_Contig150:54690..54737Pylaiella littoralis U1_48UTRP-littoralis_Contig150 54691..54737 +
1680789716.2188315-UTR-P-littoralis_Contig150:55547..555891680789716.2188315-UTR-P-littoralis_Contig150:55547..55589Pylaiella littoralis U1_48UTRP-littoralis_Contig150 55548..55589 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789716.1991074-CDS-P-littoralis_Contig150:54737..547641680789716.1991074-CDS-P-littoralis_Contig150:54737..54764Pylaiella littoralis U1_48CDSP-littoralis_Contig150 54738..54764 +
1680789716.2088754-CDS-P-littoralis_Contig150:55364..555471680789716.2088754-CDS-P-littoralis_Contig150:55364..55547Pylaiella littoralis U1_48CDSP-littoralis_Contig150 55365..55547 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig150.16.1prot_P-littoralis_Contig150.16.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig150 54738..55547 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig150.16.1

>prot_P-littoralis_Contig150.16.1 ID=prot_P-littoralis_Contig150.16.1|Name=mRNA_P-littoralis_Contig150.16.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=70bp
MTDRRHLIKVMAQIKRCFPSYPPCCCGSGGSNHYGVLEKEDPGVSAIKQG
ADAMGSVADLVNGIIGMVG*
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mRNA from alignment at P-littoralis_Contig150:54691..55589+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig150.16.1 ID=mRNA_P-littoralis_Contig150.16.1|Name=mRNA_P-littoralis_Contig150.16.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=899bp|location=Sequence derived from alignment at P-littoralis_Contig150:54691..55589+ (Pylaiella littoralis U1_48)
AGGATCTGGGTGTTGTGACGAGGAGGGACCTGGCCGAGCTGGTGGGCATG
ACCGACAGGAGACATCTAATAAAGGCAAGCGAAGCGTCTCGACCAAACAT
CGTACACGCAGAACGGTACACACACACGCATCGGATCGTTTCTGTGCCAT
CAGGCACGAAACACGGTCATCATGATCAAGCTTTCTTCAGTCGGTCAATC
AATCAGCCCGCGCCCGAACCTAAAAAGCTTTACTACTGCTGCTTCATCGC
CTTCTGTGTGTTTGCACGTACATACGTCATGTCATCATGCTCGCTTTCGT
GTGTGTCTTTCACTTGTGATGACGCTGGTTGGATTAACCGCAGCAGCAGC
GGCGGCGGCGGCATGGCCGGCGAGTTCGAAACCAAGGGCATGGCCGAGAT
GACAAAAGCCAGCCGTGGAGCTGAAGCGGCGGTGCTTTCCGCGAGCGAGC
GAGAGGCTCTTCCGATACCCCCCTCCCGCCGTTCGCAAATACAATCACAA
CAAATACAGATTATTTTTTTCTTGTTTTTGCTGTGACTCACTCACTGCGT
GGGCAGCAACTACTTTTTTGACGCTGCCCGGATTGACGATATCGAACGAT
ACGATAGCACGCAGCCAAGTCACCCTCCCCCCCACCAACCGAAAACCACC
ATATGTGCATGCGGCTATCCACAGGTAATGGCGCAGATCAAGCGCTGCTT
CCCCAGCTACCCTCCGTGCTGCTGCGGGTCTGGCGGAAGTAATCATTATG
GTGTCCTCGAGAAGGAGGACCCTGGCGTCTCTGCAATAAAGCAAGGCGCT
GATGCGATGGGGTCTGTCGCGGACTTAGTCAACGGAATCATCGGAATGGT
GGGATGAATGGAGCACGGTTATCGCCTACTTTTATTTGTCCGAGGTCCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig150:54691..55589+

>mRNA_P-littoralis_Contig150.16.1 ID=mRNA_P-littoralis_Contig150.16.1|Name=mRNA_P-littoralis_Contig150.16.1|organism=Pylaiella littoralis U1_48|type=CDS|length=210bp|location=Sequence derived from alignment at P-littoralis_Contig150:54691..55589+ (Pylaiella littoralis U1_48)
ATGACCGACAGGAGACATCTAATAAAGGTAATGGCGCAGATCAAGCGCTG
CTTCCCCAGCTACCCTCCGTGCTGCTGCGGGTCTGGCGGAAGTAATCATT
ATGGTGTCCTCGAGAAGGAGGACCCTGGCGTCTCTGCAATAAAGCAAGGC
GCTGATGCGATGGGGTCTGTCGCGGACTTAGTCAACGGAATCATCGGAAT
GGTGGGATGA
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