mRNA_P-littoralis_Contig15.190.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig15.190.1
Unique NamemRNA_P-littoralis_Contig15.190.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig15.190.1 vs. uniprot
Match: D7FRU6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRU6_ECTSI)

HSP 1 Score: 180 bits (456), Expect = 8.050e-49
Identity = 90/147 (61.22%), Postives = 107/147 (72.79%), Query Frame = 1 
Query:  157 CGWIQKSKPWRTSGQWVLAVRKTMPPAPDLCEWS-----KANKRWRSTIPLWSPYRDDRQWFAAWELGRRLVLTGFLIAVPPDGEGNEHIRAVVAFVLAGVALVVGEVARPHRDPWIYWIYRAGGFIILLMTLAGLLQKVGSSRSNA 582
            C W+ KSK WR SG+ VLAVRK+M P  D   W      + N+RWRSTIP+WSPY+  RQ FAAWE+GRRL+LTGFL AVPP GEG   +R  VA  LAGV+LVVGEV RPHRDPWI W+YR GGF ILL  L GL QK+G++ + +
Sbjct: 1095 CVWLSKSKAWRASGRGVLAVRKSMSPDSD-SSWETTSSKRNNRRWRSTIPVWSPYKAGRQGFAAWEIGRRLLLTGFLTAVPP-GEG--FMRVAVACALAGVSLVVGEVVRPHRDPWIGWVYRGGGFAILLANLTGLAQKIGAADTGS 1237
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BLAST of mRNA_P-littoralis_Contig15.190.1 vs. uniprot
Match: A0A6H5KU24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU24_9PHAE)

HSP 1 Score: 167 bits (423), Expect = 2.140e-44
Identity = 88/148 (59.46%), Postives = 103/148 (69.59%), Query Frame = 1 
Query:  166 IQKSKPWRTSGQWVLAVRKTMPPAPDLCEWS------KANKRWRSTIPLWSPYRDDRQWFAAWELGRRLVLTGFLIAVPPDGEGNEHIRAVVAFVLAGVALVVGEVARPHRDPWIYWIYRAGGFIILLMTLAGLLQKVGSSRSNAVLV 591
            +  SK WR SG+ VLAVRK+M    D   W       + N+RWRSTIP+WSPY+  RQ FAAWELGRRL+LTGFL AVPP GEG   +R  VA  LAGV+LVVGEV RPHRDPWI W+YR GG  ILL  L GL QK G++ + + LV
Sbjct:  419 LSTSKAWRASGRGVLAVRKSMSSDSD-SSWETTTSSKRNNRRWRSTIPVWSPYKAGRQGFAAWELGRRLLLTGFLTAVPP-GEG--FMRVAVACALAGVSLVVGEVVRPHRDPWIGWVYRGGGLAILLANLTGLAQKTGAADTGSPLV 562
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig15.190.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FRU6_ECTSI8.050e-4961.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KU24_9PHAE2.140e-4459.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig15contigP-littoralis_Contig15:676316..679777 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FPF7
Model size591
Max annot lvl2880.D7FPF7|-
Hectar predicted targeting categoryother localisation
Exons4
Evalue1.85e-09
EggNOG OGs2D43J@1|root,2STRI@2759|Eukaryota
Cds size591
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789713.5250683-CDS-P-littoralis_Contig15:676315..6763481680789713.5250683-CDS-P-littoralis_Contig15:676315..676348Pylaiella littoralis U1_48CDSP-littoralis_Contig15 676316..676348 -
1680789713.5377522-CDS-P-littoralis_Contig15:676653..6767011680789713.5377522-CDS-P-littoralis_Contig15:676653..676701Pylaiella littoralis U1_48CDSP-littoralis_Contig15 676654..676701 -
1680789713.5482838-CDS-P-littoralis_Contig15:677958..6782161680789713.5482838-CDS-P-littoralis_Contig15:677958..678216Pylaiella littoralis U1_48CDSP-littoralis_Contig15 677959..678216 -
1680789713.5572884-CDS-P-littoralis_Contig15:679525..6797771680789713.5572884-CDS-P-littoralis_Contig15:679525..679777Pylaiella littoralis U1_48CDSP-littoralis_Contig15 679526..679777 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig15.190.1prot_P-littoralis_Contig15.190.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig15 676316..679777 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig15.190.1

>prot_P-littoralis_Contig15.190.1 ID=prot_P-littoralis_Contig15.190.1|Name=mRNA_P-littoralis_Contig15.190.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=197bp
GVKADSDNAKVQVLVRSEKSSLTTLPRGDWEEVEGGGTKGNRIDNGGCGG
DGCGWIQKSKPWRTSGQWVLAVRKTMPPAPDLCEWSKANKRWRSTIPLWS
PYRDDRQWFAAWELGRRLVLTGFLIAVPPDGEGNEHIRAVVAFVLAGVAL
VVGEVARPHRDPWIYWIYRAGGFIILLMTLAGLLQKVGSSRSNAVLV
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mRNA from alignment at P-littoralis_Contig15:676316..679777-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig15.190.1 ID=mRNA_P-littoralis_Contig15.190.1|Name=mRNA_P-littoralis_Contig15.190.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3462bp|location=Sequence derived from alignment at P-littoralis_Contig15:676316..679777- (Pylaiella littoralis U1_48)
GGGGTCAAGGCAGACAGCGACAACGCCAAGGTTCAGGTTTTGGTGAGGTC
GGAAAAGTCGTCCCTGACGACACTTCCGAGAGGCGACTGGGAGGAGGTGG
AAGGGGGGGGCACGAAGGGCAACAGGATCGACAACGGCGGTTGTGGGGGT
GACGGTTGCGGTTGGATTCAGAAAAGCAAGCCCTGGAGGACGTCCGGGCA
GTGGGTTCTGGCTGTTCGGAAGACCATGCCCCCCGCACCTGATTTATGCG
AGGTATGATACGAAGAATCGTCCTGATATGAAGTACCTCGTACGTATGAT
TCATGTATATCGTATGATGTGGTTGGATCCGGTGGGGGTCTACTCCGCAT
TGTTGCTGGTTATCTCACATTGTCTTTTGACCACCAAGGGTCGGTGATGC
AGCACGAACAAGCGGAAGCAAGAGGTGCCTGGAAGGAAAAAAACGGGGGG
GAAAGTTAAAATGAATTCAAAATATTTGAAAACAAAGTTCACTTGGTATT
TACATCACCGTATTTTTAGAGAAGCACCGTCCTGAGGGGGGGTCTCTTCT
GTCTCCGGTGACAACATACAGCCTAAAAAAAGGGGGAGGGAGTGCGGTAC
CCCTGCTGCTGTTGGTCGATCGGTTAGCCGTATATGGCACCAGGTAATAC
ATGAAAAGTTACTTCATCCCCCCGACCCACCCATCCATCGTTTTCCTTCT
CTGTTCTTCCATGGCTTGGTTTTTCATCTCCGCGCGAGTTCTTTCGGTTG
GCGAGTTTGCTGTGTTGGGGTTTTACGTTATTTCACTTTTTCTCTCACCG
CCCCCACGTCGCCGCCGCCGCCGCCGCCGTCGCCGCCGCTGCCGCTTCCA
CTCGGGAAAAAAAGTAAACGAACGGCCAAGCGATATTTGCAGACGATTTT
GTGGGAGTTCCATAGCCGCAAAGCGGCGTGCAAGAACCGAGCTATGTACT
ACAAATACCGTTTTTCACGCGAATGTGAAAGTGGTGCTTGCGGCAAAGAC
GAGTGTCAGTAAATGACGTGCACACTAGTCATCGTTACGACAGCAAGGGC
AACAACCTGCTCGTGTAGTGCTGGGCCGACGTATGTACAGACATAATACT
TCAAGTAGAAATACACAAAGTAGCTCCATGGGCATAAGGGCATGTAAAAA
TACGATGCGTCCAAAATGGCAATACCTTATAGATCCCTCCAATGCTCCAA
ATAGCGATTTGAAGGATTGCTGTTTTCAATTGCAACGGAGGTACATGCTC
AGCCAAGGGCAAACCAGAAACGAGTTTGCCCACCACCCACCCCCCACCCT
TGTCTTCGCGTTCCTATCTGCCTCCCCCCCCACAAAAAAATATTTTATAA
ACCGGCGAATCCACCCACAACTTGTTATTCTGGAACAGTGTGTGTTAGCG
TTCTGGCATCACCACGTAAAAGCGCTCATTGCTTCCCCCTCATTCATTCT
ATGTCCTCGCGATCATCGTCACTAGATGTGTTATCCCCCCCCCCCCCCTT
TCCCCCTTCGGGCCTCCCCCCTCGCGCCTTTCCTCCACTCGTGTGCGGCG
CCCCCCCGAAGTGGTCAAAGGCGAACAAAAGATGGCGCAGCACGATTCCG
TTGTGGTCACCCTATCGGGACGACCGGCAGTGGTTCGCAGCTTGGGAGTT
AGGCAGGCGTTTGGTGCTCACGGGGTTTCTCATCGCTGTGCCCCCGGACG
GTGAAGGCAACGAGCACATCCGCGCCGTGGTTGCGTTTGTGCTGGCGGGA
GTGGCCCTGGTGGTGGGCGAGGTCGCGCGGCCCCATAGGGACCCATGGAT
ATACTGGATTTATCGTGCGGTGAGCGATCCCTCTTCTGAGCTTTGAGTTT
TTCTTTTCTTCCGGCCTTTGATTGGCGCTCTGCCGACCTTGAAATGATTG
ACTCAAACCCCGTCATTACTGTGTCTGTTGGTTGTTGCGGAGCGTCGATA
CCCCCCCGGGGGTGGTGGTGGTGTGGTGCGCGGTGTGGGCTGTTGCGTAG
AGGTAGCATTGCGAAGTGGTTGAACGAACACTACTTTTCGAGGCACTTCG
TGTTACGTATGATAGTATCGCACCTTCGCATTACTCTGAGAATCCGCAGG
GTTTGTTAAGGTGAAGGGGTCATCCGTGAGTTCGATCTTTCACTCGCACG
AAAGTCTTCCACGGTAACATTCGTGACAAAATTGAGACTACGAATGTGTG
TAGGTAGCGCGTGATGATAGCCTTTGCTCTCGCACCTGAGGGAGTCGTGT
GTACGGTATCGGTGTTGTAGCTGAGACTATCTGCGTATTGCATAAAGATG
ACCCGACCAACCCTAAATGTGAGCACACCGTTTGTGTTGTTTAACCGGGT
TTGGTCACTACGAAATGAAGAGAGGGGCGTGCCCGACTTCATTCATACGC
CGCCGAAAAAAAAGGTCTCGTAACGAGCCCGATGCGATTTTGTTTGAGCG
CATTCATGTGCGCTCATTGGTTCAAGGTGTGGTTGACTTTCACTGGATTA
TAGGAGTACAGGCCGGGGAGTAGCACTATTGTGTGTGGCGTTGGGGTCGG
GGGCGGTCCAGATTATCGAGTTTTGAGTTTCTCAAACGGCGGCAAGGCGC
ACGGCAGGGTGGGCAAGCACTTCCTGCGATCTGATCTGATCCCTGTTTTT
TGTTTTCCCTGGGCAATATCTCTTGCATGACCCCCGCGCAGCGCAACGCC
CACGACTCCCGCTTGCTATGATATGACTATGATATTATACCTCTCACCTG
TGCAGTCGCTACTCCACTCTGATAGCGCGCTTCTTACGCTTTGTCAGGTT
CCTCGGCGTGTATCCCGGAACGTCCCTTCGTGTGTCCCGAAACGTATATA
ATATATTTCGTAGGGCCGCTGTGTGTCGACTTGACCCCGTTCGTTGCTAT
CGTGTTGGCCATTCGCGCTGCTGCTGGATGATGGTTCGCGGTTGCCGTCC
GTTACCCTCCTCCGTGAGAGCTCGCAAAACAGTACGATAGTATTCCTCCG
TATTTCCGTGTTGACCTTCTGTGTGCTCGTCGTGTACGGTCTCTGCCCTG
CCCATCGTCGGGATCCATGCCAACAGGGAGGGTTCATCATCCTCCTCATG
ACTCTGGCAGGTCTGCTTCAAAAGGTCAGCTGCGTTGTTGGATGTATTCG
TCTCATGATTGACGTTTCTGACCTTTTGTGTGCCAGTTTCCGAAGGACCG
TTTCGTTTGACGCGCACTTATTTGTATGGCCGGGGGTTGACACCGTCGTG
TGTGGGTTCTTCCAGTCATAGGCCTGAATTTGGTTGCACGTATGATGCAG
TGCCACAATTTATTCAAGCGTGACGTTGAACGTAACACGAACTCTTTTGC
GAACATGACGTGTTGCTCTTGTCACAAAAAGCTCTATCCTCCCCTCCCAT
CCCCTCGCTTCCTACCCTTGCTCCGGCAGGTCGGCTCCTCCCGGTCCAAC
GCTGTTCTCGTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig15:676316..679777-

>mRNA_P-littoralis_Contig15.190.1 ID=mRNA_P-littoralis_Contig15.190.1|Name=mRNA_P-littoralis_Contig15.190.1|organism=Pylaiella littoralis U1_48|type=CDS|length=591bp|location=Sequence derived from alignment at P-littoralis_Contig15:676316..679777- (Pylaiella littoralis U1_48)
GGGGTCAAGGCAGACAGCGACAACGCCAAGGTTCAGGTTTTGGTGAGGTC
GGAAAAGTCGTCCCTGACGACACTTCCGAGAGGCGACTGGGAGGAGGTGG
AAGGGGGGGGCACGAAGGGCAACAGGATCGACAACGGCGGTTGTGGGGGT
GACGGTTGCGGTTGGATTCAGAAAAGCAAGCCCTGGAGGACGTCCGGGCA
GTGGGTTCTGGCTGTTCGGAAGACCATGCCCCCCGCACCTGATTTATGCG
AGTGGTCAAAGGCGAACAAAAGATGGCGCAGCACGATTCCGTTGTGGTCA
CCCTATCGGGACGACCGGCAGTGGTTCGCAGCTTGGGAGTTAGGCAGGCG
TTTGGTGCTCACGGGGTTTCTCATCGCTGTGCCCCCGGACGGTGAAGGCA
ACGAGCACATCCGCGCCGTGGTTGCGTTTGTGCTGGCGGGAGTGGCCCTG
GTGGTGGGCGAGGTCGCGCGGCCCCATAGGGACCCATGGATATACTGGAT
TTATCGTGCGGGAGGGTTCATCATCCTCCTCATGACTCTGGCAGGTCTGC
TTCAAAAGGTCGGCTCCTCCCGGTCCAACGCTGTTCTCGTC
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